medRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: Oct. 25, 2022
We
previously
reported
inborn
errors
of
TLR3-
and
TLR7-dependent
type
I
interferon
(IFN)
immunity
in
1-5%
unvaccinated
patients
with
life-threatening
COVID-19,
auto-antibodies
against
IFN
another
15-20%
cases.We
report
here
a
genome-wide
rare
variant
burden
association
analysis
3,269
COVID-19
(1,301
1,968
new
patients),
1,373
SARS-CoV-2-infected
individuals
without
pneumonia.
A
quarter
the
tested
had
antibodies
(234
928)
were
excluded
from
analysis.No
gene
reached
significance.
Under
recessive
model,
most
significant
at-risk
variants
was
TLR7
,
an
OR
27.68
(95%CI:1.5-528.7,
P=
1.1×10
-4
),
analyses
restricted
to
biochemically
loss-of-function
(bLOF)
variants.
replicated
enrichment
predicted
LOF
(pLOF)
at
13
influenza
susceptibility
loci
involved
TLR3-dependent
(OR=3.70
[95%CI:1.3-8.2],
2.1×10
).
Adding
recently
TYK2
locus
strengthened
this
enrichment,
particularly
under
model
(OR=19.65
[95%CI:2.1-2635.4];
3.4×10
-3
When
these
14
considered,
all
hemizygous
(
n
=20)
or
homozygous
=5)
for
pLOF
bLOF
(OR=39.19
[95%CI:5.2-5037.0],
P
=4.7×10
-7
who
also
showed
heterozygous
(OR=2.36
[95%CI:1.0-5.9],
=0.02).
Finally,
15
significantly
younger
(mean
age
[SD]=43.3
[20.3]
years)
than
other
(56.0
[17.3]
years;
1.68×10
-5
).Rare
genes
can
underlie
inheritance,
60
years
old.
Journal of Clinical Medicine,
Journal Year:
2023,
Volume and Issue:
12(1), P. 335 - 335
Published: Jan. 1, 2023
During
the
past
few
years,
unexpected
developments
have
driven
studies
in
field
of
clinical
immunology.
One
driver
immense
impact
was
outbreak
a
pandemic
caused
by
novel
virus
SARS-CoV-2.
Excellent
recent
reviews
address
diverse
aspects
immunological
re-search
into
cardiovascular
diseases.
Here,
we
specifically
focus
on
selected
taking
advantage
advanced
state-of-the-art
molecular
genetic
methods
ranging
from
genome-wide
epi/transcriptome
mapping
and
variant
scanning
to
optogenetics
chemogenetics.
First,
discuss
emerging
relevance
diagnostics
for
diseases,
including
those
associated
with
COVID-19—with
role
inflammation
cardiomyopathies
arrhythmias.
Second,
consider
newly
identified
interactions
at
organ
system
levels
which
affect
pathogenesis.
Thus,
immune
influences
arising
intestinal
are
moving
towards
therapeutic
exploitation.
Further,
powerful
new
research
tools
enabled
insight
brain–immune
unprecedented
resolution.
This
latter
line
investigation
emphasizes
strength
influence
emotional
stress—acting
through
defined
brain
regions—upon
viral
disorders.
Several
challenges
need
be
overcome
before
full
these
far-reaching
findings
will
hit
arena.
EBioMedicine,
Journal Year:
2023,
Volume and Issue:
94, P. 104731 - 104731
Published: July 22, 2023
The
clinical
outcomes
of
SARS-CoV-2
infection
vary
in
severity,
potentially
influenced
by
the
resident
human
microbiota.
There
is
limited
consensus
on
conserved
microbiome
changes
response
to
infection,
with
many
studies
focusing
severely
ill
individuals.
This
study
aimed
assess
variation
upper
respiratory
tract
using
saliva
specimens
a
cohort
individuals
primarily
mild
moderate
disease.
Reports — Medical Cases Images and Videos,
Journal Year:
2023,
Volume and Issue:
6(4), P. 45 - 45
Published: Sept. 22, 2023
During
the
COVID-19
pandemic,
it
became
apparent
that
precision
medicine
relies
heavily
on
biological
multi-omics
discoveries.
High
throughput
omics
technologies,
such
as
host
genomics,
transcriptomics,
proteomics,
epigenomics,
metabolomics/lipidomics,
and
microbiomics,
have
become
an
integral
part
of
diagnostics.
The
large
number
data
generated
by
technologies
allows
for
identification
vulnerable
demographic
populations
are
susceptible
to
poor
disease
outcomes.
Additionally,
these
help
pinpoint
omics-based
biomarkers
currently
driving
advancements
in
preventive
medicine,
early
diagnosis
prognosis,
individualized
treatments,
vaccination.
This
report
summarizes
COVID-19-omic
studies,
highlights
results
completed
ongoing
investigations
individuals
who
experienced
severe
outcomes,
examines
impact
repurposed/novel
antiviral
drugs,
targeted
immunotherapeutics,
vaccines
had
individual
public
health.
Genes,
Journal Year:
2023,
Volume and Issue:
14(10), P. 1907 - 1907
Published: Oct. 5, 2023
COVID-19
is
an
infectious
disease
caused
by
coronavirus
2
of
the
severe
acute
syndrome
(SARS-CoV-2).
Single
nucleotide
polymorphisms
(SNPs)
in
genes,
such
as
TLR2,
responsible
for
effective
human
immune
response,
can
change
course
infection.
The
objective
this
article
was
to
verify
associations
between
epidemiological
factors
and
TLR2
SNP
rs3804100
(Thymine
[T]
>
Cytosine
[C])
professionals
from
Health
Institutions
(HI)
who
worked
during
first
pandemic
wave
COVID-19.
A
case-control
study
conducted
with
Belém-PA
HI
workers
(Northern
Brazil),
divided
into
symptomatology
groups
(Asymptomatic-AS;
n
=
91;
Symptomatic-SI;
123);
severity
classified
Chest
Computerized
Tomography
data
(symptomatic
pulmonary
involvement-SCP;
35;
symptomatic
without
involvement-SSP;
8).
Genotyping
performed
Sanger
sequencing,
Statistical
Analysis
through
SPSS
program.
Bioinformatics
servers
predicted
biological
functions
SNP.
There
were
presence
comorbidities
poor
prognosis
(especially
overweight
obesity)
sickness
family
members
kinship
(related
blood
relatives).
homozygous
recessive
(C/C)
genotype
not
found,
frequency
mutant
allele
(C)
less
than
10%
cohort.
No
significant
found
indicated
be
benign
causes
a
decrease
stability
protein.
These
help
scientific
community
medicine
find
new
forms
containment.
medRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: Oct. 25, 2022
We
previously
reported
inborn
errors
of
TLR3-
and
TLR7-dependent
type
I
interferon
(IFN)
immunity
in
1-5%
unvaccinated
patients
with
life-threatening
COVID-19,
auto-antibodies
against
IFN
another
15-20%
cases.We
report
here
a
genome-wide
rare
variant
burden
association
analysis
3,269
COVID-19
(1,301
1,968
new
patients),
1,373
SARS-CoV-2-infected
individuals
without
pneumonia.
A
quarter
the
tested
had
antibodies
(234
928)
were
excluded
from
analysis.No
gene
reached
significance.
Under
recessive
model,
most
significant
at-risk
variants
was
TLR7
,
an
OR
27.68
(95%CI:1.5-528.7,
P=
1.1×10
-4
),
analyses
restricted
to
biochemically
loss-of-function
(bLOF)
variants.
replicated
enrichment
predicted
LOF
(pLOF)
at
13
influenza
susceptibility
loci
involved
TLR3-dependent
(OR=3.70
[95%CI:1.3-8.2],
2.1×10
).
Adding
recently
TYK2
locus
strengthened
this
enrichment,
particularly
under
model
(OR=19.65
[95%CI:2.1-2635.4];
3.4×10
-3
When
these
14
considered,
all
hemizygous
(
n
=20)
or
homozygous
=5)
for
pLOF
bLOF
(OR=39.19
[95%CI:5.2-5037.0],
P
=4.7×10
-7
who
also
showed
heterozygous
(OR=2.36
[95%CI:1.0-5.9],
=0.02).
Finally,
15
significantly
younger
(mean
age
[SD]=43.3
[20.3]
years)
than
other
(56.0
[17.3]
years;
1.68×10
-5
).Rare
genes
can
underlie
inheritance,
60
years
old.