Type 2 diabetes, gut microbiome, and systems biology: A novel perspective for a new era DOI Creative Commons
Yoscelina Estrella Martínez-López, Diego Esquivel-Hernández,

Jean Paul Sánchez-Castañeda

et al.

Gut Microbes, Journal Year: 2022, Volume and Issue: 14(1)

Published: Aug. 24, 2022

The association between the physio-pathological variables of type 2 diabetes (T2D) and gut microbiota composition suggests a new avenue to track disease improve outcomes pharmacological non-pharmacological treatments. This enterprise requires strategies elucidate metabolic disturbances occurring in microbiome as progresses. To this end, physiological knowledge systems biology pave way for characterizing identifying move toward healthy compositions. Here, we dissect recent associations T2D. In addition, discuss advances how drugs, diet, exercise modulate favor stages. Finally, present computational approaches disentangling activity underlying host-microbiota codependence. Altogether, envision that combination physiology modeling metabolism will drive us optimize diagnosis treatment T2D patients personalized way.

Language: Английский

Molecular Mechanisms of Microbiota-Mediated Pathology in Irritable Bowel Syndrome DOI Open Access
Yoshiyuki Mishima, Shunji Ishihara

International Journal of Molecular Sciences, Journal Year: 2020, Volume and Issue: 21(22), P. 8664 - 8664

Published: Nov. 17, 2020

Irritable bowel syndrome (IBS) is one of the most prevalent functional gastrointestinal disorders, and accumulating evidence gained in both preclinical clinical studies indicate involvement enteric microbiota its pathogenesis. Gut resident appear to influence brain activity through nervous system, while their composition function are affected by central system. Based on these results, term "brain-gut-microbiome axis" has been proposed have become a potential therapeutic target IBS cases. However, details regarding microbe-related pathophysiology remain elusive. This review summarizes existing knowledge molecular mechanisms pathogenesis as well recent progress related microbiome-derived neurotransmitters, compounds, metabolites, neuroendocrine factors, enzymes.

Language: Английский

Citations

71

Advances in constraint-based modelling of microbial communities DOI Creative Commons
Almut Heinken, Arianna Basile, Ines Thiele

et al.

Current Opinion in Systems Biology, Journal Year: 2021, Volume and Issue: 27, P. 100346 - 100346

Published: May 21, 2021

Microbial communities are near universally present in nature. A wealth of meta-omics data has been gathered from numerous ecosystems, such as the human gut, ocean or soil. Constraint-based reconstruction and analysis is a valuable tool for contextualisation allows mechanistic prediction metabolic fluxes. Advances genome-scale multispecies modelling tools have enabled construction interrogation constraint-based models on microbiome scale spanning hundreds organisms. Here, we give comprehensive overview areas application these multiscale, strain- molecule-resolved models, discuss key works, which computational yielded novel biological knowledge. We show that can complement experimental approaches applications ecology, health, industry to environmental conservation.

Language: Английский

Citations

61

ACSL4 is essential for radiation-induced intestinal injury by initiating ferroptosis DOI Creative Commons
Qian Ji, Shengqiao Fu, Hao Zuo

et al.

Cell Death Discovery, Journal Year: 2022, Volume and Issue: 8(1)

Published: July 22, 2022

Lipid peroxidation-induced ferroptosis is a newly recognized type of programmed cell death. With the method RNA sequencing, we found that irradiation (IR) markedly increased expression promotive genes, whereas reduced suppressive genes in murine intestine tissues, when compared with those liver and lung tissues. By using inducer RSL-3 inhibitor liproxstatin-1, essential for IR-induced intestinal injury. Acyl-CoA Synthetase Long-Chain Family Member 4 (ACSL4) an important component execution, ACSL4 was significantly upregulated irradiated but not or Antibacterial antifungal regents ASCL4 protected against tissue injury Further studies showed troglitazone, inhibitor, succeeded to suppresses lipid peroxidation damage after IR.

Language: Английский

Citations

46

Current findings in endometrial microbiome: impact on uterine diseases DOI Open Access
Diana Medina-Bastidas, Ignacio Camacho‐Arroyo, Elizabeth García-Gómez

et al.

Reproduction, Journal Year: 2022, Volume and Issue: 163(5), P. R81 - R96

Published: Feb. 23, 2022

Microbiome or microbiota is essential to regulate many mammalian physiological processes, including reproduction. Like other organs tissues, the upper female reproductive tract used be considered as devoid of microorganisms; however, a non-infection-related bacterial community was discovered in uterus from humans and mammals, its composition related success. The dysbiosis endometrial associated with benign malign uterine diseases. Hence, this review addressed current knowledge about alterations their association common diseases, polyposis, endometriosis, myomatosis, hyperplasia, cancer. There specific endometrium most-analyzed However, constant finding consists reduced abundance Firmicutes Lactobacillus , while there an increased Proteobacteria (such Escherichia coli Enterococcus ), Bacteroidetes ( Prevotella for example), Actinobacteria (as Gardnerella contrast healthy endometrium. Besides, we discussed future usefulness components biomarkers diagnose diseases probable clinical outcomes. In addition, analyzed potential use probiotics since they could provide alternative complement existing therapies.

Language: Английский

Citations

45

Type 2 diabetes, gut microbiome, and systems biology: A novel perspective for a new era DOI Creative Commons
Yoscelina Estrella Martínez-López, Diego Esquivel-Hernández,

Jean Paul Sánchez-Castañeda

et al.

Gut Microbes, Journal Year: 2022, Volume and Issue: 14(1)

Published: Aug. 24, 2022

The association between the physio-pathological variables of type 2 diabetes (T2D) and gut microbiota composition suggests a new avenue to track disease improve outcomes pharmacological non-pharmacological treatments. This enterprise requires strategies elucidate metabolic disturbances occurring in microbiome as progresses. To this end, physiological knowledge systems biology pave way for characterizing identifying move toward healthy compositions. Here, we dissect recent associations T2D. In addition, discuss advances how drugs, diet, exercise modulate favor stages. Finally, present computational approaches disentangling activity underlying host-microbiota codependence. Altogether, envision that combination physiology modeling metabolism will drive us optimize diagnosis treatment T2D patients personalized way.

Language: Английский

Citations

41