Frontiers in Microbiology,
Journal Year:
2022,
Volume and Issue:
13
Published: July 8, 2022
Brassica
napus
(Rapeseed)
is
an
econfomically
important
oil-producing
crop.
The
microbial
interactions
in
the
plant
holobiont
are
fundamental
to
understanding
of
growth
and
health.
To
investigate
dynamics
feral
B.
napus,
a
total
215
samples,
comprised
bulk
soil,
primary
root,
lateral
dead
leaf,
caulosphere,
basal
apical
carposphere,
anthosphere,
were
collected
from
five
different
grassland
sites
South
Korea.
soil
properties
differed
sampling
sites,
but
prokaryotic
communities
segregated
according
components.
structures
site-specific
SparCC
networks
similar
across
regions.
Recurrent
patterns
found
holobionts
recurrent
network.
Ralstonia
sp.,
Massilia
Rhizobium
clusters
observed
consistently
identified
as
core
taxa
phyllosphere,
leaf
microbiome,
rhizosphere,
respectively.
Arthropod-related
microbes,
such
Wolbachia
Gilliamella
Corynebacteriales
amplicon
sequence
variants,
anthosphere.
PICRUSt2
analysis
revealed
that
microbes
also
possessed
specific
functions
related
components,
degradation
pathways
microbiome.
Structural
equation
modeling
showed
organic
connections
among
components
essential
roles
formations
natural
ecosystem.
Microbes
coexisting
relatively
stable
community
structures,
even
though
regions
characteristics
different.
each
component
organically
connected
form
their
own
holobiont.
In
addition,
plant-related
especially
holobiont,
interaction
survival
coexistence
ecosystems.
Applied Soil Ecology,
Journal Year:
2024,
Volume and Issue:
195, P. 105262 - 105262
Published: Jan. 7, 2024
The
mixed-cropping
mode
of
hulless
barley
(Hordeum
vulgare
L)
and
peas
(Pisum
sativum
can
optimize
the
planting
system,
effectively
enhancing
crop
nitrogen
phosphorus
utilization
increasing
yield.
This
has
been
widely
applied
in
Qinghai
Province,
China.
In
this
study,
a
split-plot
experimental
design
was
employed
to
investigate
bacterial
fungal
communities
rhizosphere
soil
monocropping
treatments
under
different
fertilization
levels.
Illumina
MiSeq
sequencing
technology
used
for
research,
physicochemical
properties
were
measured.
results
indicated
that
with
increase
application
phosphorus,
α-diversity
system
initially
increased
then
decreased
after
reaching
peak.
index
bacteria
higher
than
mode.
For
fungi
Shannon
decreased,
while
Chao1
ACE
indices
increased.
Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium,
Sphingomonas,
Pseudomonas
comprised
predominant
genera
barley–pea
intercropping
treatment,
whereas
Fusarium,
Metarhizium,
Cladosporium
dominated
among
across
12
treatments.
Under
same
levels,
relative
abundances
Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium
treatment
by
8.4
%,
7.1
5.7
5.6
respectively,
compared
monoculture
barley,
decreasing
trend
as
levels
Compared
abundance
Fusarium
37.3
43.8
56.8
40.3
respectively.
Redundancy
correlation
analyses
suggested
variation
diversity
community
composition
zone
due
interaction
between
fertilizer
significantly
correlated
changes
organic
matter,
available
alkaline
hydrolyzable
nitrogen.
Frontiers in Microbiology,
Journal Year:
2021,
Volume and Issue:
12
Published: Nov. 5, 2021
Flooding
affects
both
above-
and
below-ground
ecosystem
processes,
it
represents
a
substantial
threat
for
crop
cereal
productivity
under
climate
change.
Plant-associated
microbiota
play
crucial
role
in
plant
growth
fitness,
but
we
still
have
limited
understanding
of
the
response
crop-microbiota
complex
extreme
weather
events,
such
as
flooding.
Soil
microbes
are
highly
sensitive
to
abiotic
disturbance,
shifts
microbial
community
composition,
structure
functions
expected
when
soil
conditions
altered
due
flooding
events
(e.g.,
anoxia,
pH
alteration,
changes
nutrient
concentration).
Here,
established
pot
experiment
determine
effects
stress
on
spring
wheat-microbiota
complex.
Since
phenology
could
be
an
important
factor
hydrological
stress,
was
induced
only
once
at
different
stages
(PGSs),
tillering,
booting
flowering.
After
each
event,
measured
control
flooded
pots
several
edaphic
properties
characterized
bacterial
associated
rhizosphere
roots
wheat
using
metabarcoding
approach.
In
our
study,
caused
significant
reduction
development
observed
dramatic
composition
PGS
which
induced.
However,
more
pronounced
disruption
assembly
always
shown
younger
plants.
Generally,
(i)
increase
taxa
with
anaerobic
respiratory
capabilities,
members
Firmicutes
Desulfobacterota,
(ii)
Actinobacteria
Proteobacteria,
(iii)
depletion
putative
plant-beneficial
taxa,
(iv)
increases
abundance
potential
detrimental
bacteria.
These
differences
between
samples
were
correlated
by
total
N
soil,
S,
Na,
Mn,
Ca
concentrations
root
most
influencing
assemblage
mircobiota
stress.
Collectively,
findings
demonstrated
restructuring
microbiota,
highlighted
effect
this
fitness
performance.
Applied Soil Ecology,
Journal Year:
2024,
Volume and Issue:
196, P. 105286 - 105286
Published: Jan. 22, 2024
Increasing
water
demand
from
agricultural
practices
and
environmental
pollution
caused
by
the
intensive
use
of
agrochemicals
are
among
most
pressing
issues
concerning
agriculture
sustainability.
The
amorphous
silica
(ASi)
as
soil
amendment
can
represent
a
valid
alternative
measure
to
cope
with
upcoming
challenges
intensifying
drought
stress
decrease
need
for
phosphorus
fertilizer
application.
In
this
study,
we
investigated
impact
two
levels
ASi
fertilization
on
edaphic
characteristics
rhizosphere
microbiota
winter
wheat
through
field
experiment
conducted
during
period.
Since
plant
phenology
plays
pivotal
role
in
shaping
crop
microbiota,
our
research
explored
response
bacteria
fungi
at
three
distinct
stages
growth:
pre-planting,
tillering,
ripening.
Firstly,
results
clearly
showed
an
ameliorative
effect
properties,
notable
improvements
moisture,
particularly
higher
levels.
Secondly,
observed
that
exerted
profound
influence
resulting
varying
effects
bacterial
fungal
communities.
Specifically,
comparison
control
treatment,
community
composition
exhibited
greater
sensitivity
tillering
stage,
whereas
displayed
increased
dissimilarity
ripening
stage.
Notably,
promoted
enrichment
plant-beneficial
microbes
putative
plant-growth
promoting
biocontrol
capabilities.
Overall,
findings
highlight
efficacy
effective
mitigate
stress,
enhance
availability
nutrients,
promote
beneficial
within
cereal
cropping
systems.
mSystems,
Journal Year:
2022,
Volume and Issue:
7(4)
Published: Aug. 9, 2022
The
soil
fungal
community
plays
pivotal
roles
in
nutrient
cycling
and
plant
health
productivity
agricultural
ecosystems.
However,
the
differential
adaptability
of
fungi
to
different
microenvironments
(niches)
is
a
bottleneck
limiting
their
application
agriculture.
Hence,
understanding
ecological
processes
that
drive
microbiome
assembly
along
soil-root
continuum
fundamental
harnessing
plant-associated
for
sustainable
Here,
we
investigated
factors
shape
structure
three
compartment
niches
(the
bulk
soil,
rhizosphere,
rhizoplane)
associated
with
tobacco
(Nicotiana
tabacum
L.),
four
types
tested
under
controlled
greenhouse
conditions.
Our
results
demonstrate
governed
by
host
rather
than
type
chemical
properties
exert
negligible
effect
on
rhizoplane.
Fungal
diversity
network
complexity
decreased
order
>
rhizosphere
rhizoplane,
dramatic
decrease
Ascomycota
species
number
abundance
continuum.
facilitations
(positive
interactions)
were
enhanced
among
taxa
rhizoplane
niche.
supported
specialization
enrichment
some
rare
species,
contributing
assimilative
all
types.
Mortierella
Pyrenochaetopsis
identified
as
important
indicator
genera
good
predictors
agronomic
traits.
findings
provide
empirical
evidence
selection
enrichment/depletion
IMPORTANCE
shaped
largely
type.
This
finding
facilitates
implementations
fungi-associated
biocontrol
growth-promoting
specific
plants
agriculture
practice,
regardless
impacts
from
variations
geographical
environments.
Furthermore,
depletion
complex
associations
enhancement
rhizoplane-associated
potential
simplification
an
approach
target
applications.
indicators
are
traits,
which
should
be
given
attention
when
manipulating
root-associated
microbiome.
Environmental Microbiome,
Journal Year:
2025,
Volume and Issue:
20(1)
Published: Jan. 11, 2025
Snow
mold
caused
by
different
psychrophilic
phytopathogenic
fungi
is
a
devastating
disease
of
winter
cereals.
The
variability
the
snow
pathocomplex
(the
quantitative
composition
fungi)
has
not
been
evaluated
across
crops
or
agrocenoses,
and
no
microbial
taxa
have
predicted
at
whole-microbiome
level
as
potential
effective
control
agents.
Our
study
aimed
to
assess
in
cereal
(rye,
wheat,
triticale)
agrocenoses
following
peak
progression
arrange
hierarchical
list
be
main
candidates
prevent
or,
conversely,
stimulate
development
pathogens.
microbiomes
between
within
particular
agrocenosis
was
largely
determined
fungal
communities,
whereas
crop
bacterial
communities.
most
"constant"
rye,
with
lowest
between-replicate
between-agrocenoses
(similar
triticale
pathocomplex)
strong
dominance
Microdochium
over
other
fungi.
wheat
represented
fungi,
including
poorly
investigated
Phoma
sclerotioides.
To
predict
mold-control
microorganisms,
conveyor
statistical
methods
formed
applied;
this
enables
considering
only
correlation
abundance
target
phytopathogen
but
also
stability
fitness
plant-associated
communities
reproducibility
effect
under
conditions.
This
can
widely
used
search
for
biological
agents
against
various
plant
infectious
diseases.
top
indicator
rye
period
were
Ph.
sclerotioides
Microdochium,
respectively,
both
which
are
causal
disease.
Bacteria
from
Cellulomonas,
Lechevalieria,
Pseudoxanthomonas
genera
Cladosporium,
Entimomentora,
Pseudogymnoascus,
Cistella
prime
testing
their
plant-protective
properties
Microdochium-induced
further
use
agricultural
practice.