Machine Learning Models for Predicting Multiple Myeloma Staging and MGUS Progression Using Gene Expression Data DOI Creative Commons
Nestoras Karathanasis, George M. Spyrou

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2024, Volume and Issue: unknown

Published: Nov. 15, 2024

Abstract In this study, we developed and evaluated Machine Learning (ML) models aimed at predicting the stage of multiple myeloma (MM) progression monoclonal gammopathy undetermined significance (MGUS) to MM. Accurate staging MM is critical for determining appropriate treatment strategies, our models, employing algorithms such as ElasticNet, Random Forest, Boosting, Support Vector Machines, demonstrated high efficacy in capturing biological differences across disease stages. Among these, ElasticNet model exhibited strong generalizability, achieving consistent multiclass AUC values various datasets data transformations. Predicting MGUS presents a significant challenge due scarcity cases that have progressed. We employed two-pronged approach address this: developing using limited dataset containing progressing patients training on combined datasets. The achieved slightly above 0.8, particularly with Boosting indicating their potential stratifying by risk. This study original integrating enhance predictive accuracy progression, offering novel methodology clinical applications patient monitoring early intervention. Our feature selection enrichment analyses further revealed identified genes are involved key signaling pathways, including PI3K-Akt, MAPK, Wnt, mTOR, all which play crucial roles pathogenesis. These findings align established knowledge, suggest possible therapeutic targets increase explainability models.

Language: Английский

Unveiling Extramedullary Myeloma Immune Microenvironment: A Systematic Review DOI Open Access
Kassiani Boulogeorgou, Maria Papaioannou,

Sofia Chatzileontiadou

et al.

Cancers, Journal Year: 2025, Volume and Issue: 17(7), P. 1081 - 1081

Published: March 24, 2025

In recent years, efforts by the scientific community to elucidate underlying mechanisms of clonal expansion and selection within tumors have led theory "tumor ecosystems", implicating, among other factors, role microenvironment in therapy resistance tumor progression. this context, contribution development multiple myeloma (MM) is being investigated, imparting great emphasis on continuous evolution. This process gives rise aggressive clones with potential spread extramedullary sites, rendering any treatment strategy practically ineffective. systematic review aimed gather knowledge about immune (IME) plasma cell differences synthesis between medullary disease (EMD). A search according PRISMA guidelines was conducted seven databases, six articles meeting inclusion criteria were encompassed study. Results obtained from molecular analysis as well flow cytometry immunofluorescence indicated profound genetic instability at EMD sites along spatial temporal heterogeneity IME, implying a possible correlation them. Both variability notably greater compared disease. The establishment an immunosuppressive rule, exhausted CD8+ natural killer (NK) cells, M2 macrophages, inactivated dendritic cells found co-localized neoplastic whereas cytotoxic M1 active congregated tumor-free areas. Post-therapy alterations milieu also noted concerned mostly percentages Tregs MDSCs. recognition microenvironment-myeloma interplay essential for designing specific therapeutic strategies ameliorating prognosis.

Language: Английский

Citations

0

Comprehensive genomic characterization of programmed cell death-related genes to predict drug resistance and prognosis for patients with multiple myeloma DOI Creative Commons
Yan Li, Fuxu Wang, Hongbo Zhao

et al.

Aging, Journal Year: 2025, Volume and Issue: unknown

Published: April 1, 2025

Multiple myeloma (MM) is a cancer that difficult to be diagnosed and treated. This study aimed identify programmed cell death (PCD)-related molecular subtypes of MM assess their impact on patients' prognosis, immune status, drug sensitivity. We used the ConsensusClusterPlus method classify with prognostically relevant PCD genes from patients screened. A prognostic model nomogram were established applying one-way COX regression analysis LASSO Cox analysis. sensitivity chemotherapeutic agents was predicted for at-risk populations. Six classified employing PCD-related genes, notably, three them had higher tendency escape two correlated worse prognosis MM. Furthermore, C3 subtype activated pathways such as oxidative phosphorylation DNA repair, while C2 C4 related apoptosis. The Risk score showed can correctly predict OS patients, in particular, high-risk group low overall survival (OS). Pharmacovigilance analyses revealed low-risk groups greater IC50 values drugs SB505124_1194 AZD7762_1022, respectively. 12-gene developed accurately patients. Our provided potential targets strategies individualized treatment

Language: Английский

Citations

0

Therapeutic Target Discovery for Multiple Myeloma: Identifying Druggable Genes via Mendelian Randomization DOI Creative Commons
Shijun Jiang, Fengjuan Fan, Qun Li

et al.

Biomedicines, Journal Year: 2025, Volume and Issue: 13(4), P. 885 - 885

Published: April 5, 2025

Background: Multiple myeloma (MM) is a hematological malignancy originating from the plasma cells present in bone marrow. Despite significant therapeutic advancements, relapse and drug resistance remain major clinical challenges, highlighting urgent need for novel targets. Methods: To identify potential druggable genes associated with MM, we performed Mendelian randomization (MR) analysis. Causal candidates were further validated using single-tissue transcriptome-wide association study (TWAS), colocalization analysis was conducted to assess shared genetic signals between gene expression disease risk. Potential off-target effects assessed through an MR phenome-wide (MR-PheWAS). Additionally, molecular docking functional assays used evaluate candidate efficacy. Results: The identified nine (FDR < 0.05), among which Orosomucoid 1 (ORM1) Oviductal Glycoprotein (OVGP1) supported by both TWAS evidence (PPH4 > 0.75). Experimental validation demonstrated downregulation of ORM1 OVGP1 MM (p 0.05). Pregnenolone irinotecan, as agonists OVGP1, respectively, significantly inhibited cell viability, while upregulating their Conclusions: Our highlights targets MM. efficacy pregnenolone irinotecan suppressing growth suggests application. These findings provide insights into pathogenesis offer promising strategy overcoming resistance.

Language: Английский

Citations

0

Bispecific antibodies for the treatment of hematologic malignancies: The magic is T-cell redirection DOI
Geoffrey Shouse

Blood Reviews, Journal Year: 2024, Volume and Issue: unknown, P. 101251 - 101251

Published: Nov. 1, 2024

Language: Английский

Citations

2

Talquetamab in Multiple Myeloma: Efficacy, Safety, and Future Directions DOI Creative Commons
Caterina Labanca, Enrica Antonia Martino, Ernesto Vigna

et al.

European Journal Of Haematology, Journal Year: 2024, Volume and Issue: unknown

Published: Nov. 27, 2024

ABSTRACT Relapsed and refractory multiple myeloma (RRMM) remains a challenging condition despite advances in immunotherapies. Novel bispecific antibodies (BsAbs), including talquetamab, have shown promising efficacy heavily pretreated patients, even those with triple‐ penta‐refractory disease. Talquetamab, recently approved by the FDA EMA, is indicated for patients who progressed after at least three or four prior lines of therapy (LOTs). Administered following step‐up dosing phase to manage cytokine release syndrome (CRS), talquetamab demonstrated high overall response rate (ORR) approximately 70%, previously treated T‐cell redirecting therapies. Its safety profile consistent other BsAbs, hematologic adverse events such as anemia neutropenia commonly reported, alongside unique on‐target off‐tumor toxicities like dysgeusia skin‐related events. Infections were less frequent compared BsAbs. The optimal sequencing therapies, CAR‐T cell treatments, an area active research, resistance anti‐BCMA therapies presents ongoing clinical challenges. Current trials are exploring use combination well therapeutic strategies post‐treating progression. real‐world data further support talquetamab's efficacy, making it valuable addition RRMM treatment landscape.

Language: Английский

Citations

2

Antibody avidity meets multiple myeloma DOI

Sigrid R. Ruuls,

Paul W.H.I. Parren

Nature Cancer, Journal Year: 2024, Volume and Issue: unknown

Published: Sept. 11, 2024

Language: Английский

Citations

0

Current Strategies and Future Directions in Multiple Myeloma: Disease Overview and Pathophysiology, Conventional Treatments and Emerging Therapies, Challenges and Innovations in Management DOI
Nicholas A Kerna,

Kevin D. Pruitt,

N.D. Victor Carsrud

et al.

European Journal of Medical and Health Research, Journal Year: 2024, Volume and Issue: 2(5), P. 10 - 26

Published: Sept. 1, 2024

The review examines multiple myeloma, including pathophysiology, conventional treatments, current management strategies, treatment challenges, and emerging therapies. disease, originating from malignant plasma cells, leads to bone marrow infiltration osteolytic lesions. Common manifestations include anemia, pain, renal dysfunction, hypercalcemia. Pathophysiological aspects involve disrupted signaling pathways conflicts between myeloma cells the environment. Conventional such as chemotherapy with melphalan cyclophosphamide, corticosteroids (e.g., dexamethasone), autologous stem cell transplantation (ASCT), have improved patient outcomes but come significant side effects, myelosuppression infection risks. Recent advances in targeted therapies like proteasome inhibitors bortezomib) immunomodulatory drugs lenalidomide), well monoclonal antibodies daratumumab) innovative immunotherapies, CAR T-cell therapy bispecific antibodies. Precision medicine enhances by customizing based on individual genetic molecular profiles. Despite these advancements, challenges drug resistance, relapse, refractory disease persist. Resistance mechanisms, upregulation of anti-apoptotic proteins mutations affecting metabolism, hinder effective treatment. Managing relapsed or cases frequently requires reassessing strategies exploring novel Current treatments' adverse both hematological non-hematological, impact quality life, necessitating supportive care, dose adjustments, proactive education.

Language: Английский

Citations

0

Machine Learning Models for Predicting Multiple Myeloma Staging and MGUS Progression Using Gene Expression Data DOI Creative Commons
Nestoras Karathanasis, George M. Spyrou

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2024, Volume and Issue: unknown

Published: Nov. 15, 2024

Abstract In this study, we developed and evaluated Machine Learning (ML) models aimed at predicting the stage of multiple myeloma (MM) progression monoclonal gammopathy undetermined significance (MGUS) to MM. Accurate staging MM is critical for determining appropriate treatment strategies, our models, employing algorithms such as ElasticNet, Random Forest, Boosting, Support Vector Machines, demonstrated high efficacy in capturing biological differences across disease stages. Among these, ElasticNet model exhibited strong generalizability, achieving consistent multiclass AUC values various datasets data transformations. Predicting MGUS presents a significant challenge due scarcity cases that have progressed. We employed two-pronged approach address this: developing using limited dataset containing progressing patients training on combined datasets. The achieved slightly above 0.8, particularly with Boosting indicating their potential stratifying by risk. This study original integrating enhance predictive accuracy progression, offering novel methodology clinical applications patient monitoring early intervention. Our feature selection enrichment analyses further revealed identified genes are involved key signaling pathways, including PI3K-Akt, MAPK, Wnt, mTOR, all which play crucial roles pathogenesis. These findings align established knowledge, suggest possible therapeutic targets increase explainability models.

Language: Английский

Citations

0