Integrated Analysis of Long Non-Coding RNAs and mRNAs Reveals Key Trans-Target Genes Associated with Heat Stress Response in Rhododendron delavayi DOI Creative Commons
Changming Liu, Yang Liu, Xinyue Zhang

et al.

Life, Journal Year: 2025, Volume and Issue: 15(5), P. 697 - 697

Published: April 25, 2025

Long non-coding RNAs (lncRNAs) have been defined as transcripts exceeding 200 nucleotides, which play essential roles during transcriptional and post-transcriptional regulation in multiple biological processes. Understanding R. delavayi lncRNAs is of great significance it profoundly influenced by heat stress. In this research, a total 1145 differentially expressed (DE-lncRNAs) 9447 genes (DEGs) (log2|FC| > 1, p < 0.05) were characterized between heat-stress-treated groups control groups. Further analysis showed that 229 DE-lncRNAs (144 upregulated 85 downregulated) commonly distributed two comparisons (CK_vs._H3 CK_vs._H6). We further investigated the cis- trans-acting DE-lncRNAs, found 142 corresponded to 1565 cis-acting DEGs, 143 3417 DEGs. KEGG enrichment these target revealed DEGs DE-lncRNA primarily enriched five twelve pathways, respectively. Co-expression network common pathways 57 co-expression relationships 28 43 554 26 90 Six six their used candidate verify RNA-seq data using qRT-PCR. three (TrxG, PEPC, CCR) out selected for subsequent research. This study examined relationship screened can potentially provide an important theoretical basis experimental genetic improvement tolerance delavayi.

Language: Английский

Epigenetic Mechanisms Driving Adaptation in Tropical and Subtropical Plants: Insights and Future Directions DOI Creative Commons
Matin Miryeganeh

Plant Cell & Environment, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 8, 2025

ABSTRACT Epigenetic mechanisms, including DNA methylation, histone modifications, and Noncoding RNAs, play a critical role in enabling plants to adapt environmental changes without altering their sequence. These processes dynamically regulate gene expression response diverse stressors, making them essential for plant resilience under changing global conditions. This review synthesises research on tropical subtropical plants—species naturally exposed extreme temperatures, salinity, drought, other stressors—while drawing parallels with similar mechanisms observed arid temperate ecosystems. By integrating molecular biology ecology, this synthesis highlights how provide valuable models understanding strategies applicable across broader taxa. underscores the potential of epigenetic inform conservation agricultural innovations aimed at bolstering face climate change.

Language: Английский

Citations

2
Artificial miRNAs and target-mimics as potential tools for crop improvement DOI
Tilahun Rabuma, Neeti Sanan‐Mishra

Physiology and Molecular Biology of Plants, Journal Year: 2025, Volume and Issue: 31(1), P. 67 - 91

Published: Jan. 1, 2025

Language: Английский

Citations

1
Molecular and Physiological Responses of Plants that Enhance Cold Tolerance DOI Open Access
Lixia Zhou, Fazal Ullah,

Jixin Zou

et al.

International Journal of Molecular Sciences, Journal Year: 2025, Volume and Issue: 26(3), P. 1157 - 1157

Published: Jan. 29, 2025

Low-temperature stress, including chilling and freezing injuries, significantly impacts plant growth in tropical temperate regions. Plants respond to cold stress by activating mechanisms that enhance tolerance, such as regulating photosynthesis, metabolism, protein pathways producing osmotic regulators antioxidants. Membrane stability is crucial, with cold-resistant plants exhibiting higher lipid unsaturation maintain fluidity normal metabolism. Low temperatures disrupt reactive oxygen species (ROS) leading oxidative damage, which mitigated antioxidant defenses. Hormonal regulation, involving ABA, auxin, gibberellins, others, further supports adaptation. also manage balance accumulating like proline sugars. Through complex regulatory pathways, the ICE1-CBF-COR cascade, optimize gene expression survive ensuring adaptability conditions. This study reviews recent advancements genetic engineering technologies aimed at enhancing resistance of agricultural crops. The goal provide insights for improving tolerance developing new cold-tolerant varieties.

Language: Английский

Citations

1
ncRNAs in plant development and stress responses DOI
Sarvajeet Singh Gill, Nafees A. Khan, Niraj Agarwala

et al.

Plant Physiology and Biochemistry, Journal Year: 2024, Volume and Issue: 214, P. 108950 - 108950

Published: July 18, 2024

Citations

4
Exploring the critical role of non-coding RNAs in plant development and stress adaptation-current status and insights DOI
Nilesh Shirish Wagh,

Pranav Amane,

R. V. Kshirsagar

et al.

Progress in molecular biology and translational science, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 1, 2025

Language: Английский

Citations

0
Research on the regulation mechanism of drought tolerance in wheat DOI
Tengteng Zhang, Ying Zhang,

Yi Ding

et al.

Plant Cell Reports, Journal Year: 2025, Volume and Issue: 44(4)

Published: March 20, 2025

Language: Английский

Citations

0
Integrated Analysis of Long Non-Coding RNAs and mRNAs Reveals Key Trans-Target Genes Associated with Heat Stress Response in Rhododendron delavayi DOI Creative Commons
Changming Liu, Yang Liu, Xinyue Zhang

et al.

Life, Journal Year: 2025, Volume and Issue: 15(5), P. 697 - 697

Published: April 25, 2025

Long non-coding RNAs (lncRNAs) have been defined as transcripts exceeding 200 nucleotides, which play essential roles during transcriptional and post-transcriptional regulation in multiple biological processes. Understanding R. delavayi lncRNAs is of great significance it profoundly influenced by heat stress. In this research, a total 1145 differentially expressed (DE-lncRNAs) 9447 genes (DEGs) (log2|FC| > 1, p < 0.05) were characterized between heat-stress-treated groups control groups. Further analysis showed that 229 DE-lncRNAs (144 upregulated 85 downregulated) commonly distributed two comparisons (CK_vs._H3 CK_vs._H6). We further investigated the cis- trans-acting DE-lncRNAs, found 142 corresponded to 1565 cis-acting DEGs, 143 3417 DEGs. KEGG enrichment these target revealed DEGs DE-lncRNA primarily enriched five twelve pathways, respectively. Co-expression network common pathways 57 co-expression relationships 28 43 554 26 90 Six six their used candidate verify RNA-seq data using qRT-PCR. three (TrxG, PEPC, CCR) out selected for subsequent research. This study examined relationship screened can potentially provide an important theoretical basis experimental genetic improvement tolerance delavayi.

Language: Английский

Citations

0