Human Genomics,
Journal Year:
2019,
Volume and Issue:
13(1)
Published: Aug. 1, 2019
In
recent
years,
the
rapid
development
of
next-generation
sequencing
(NGS)
technologies
has
led
to
a
significant
reduction
in
cost
with
improved
accuracy.
area
liquid
biopsy,
NGS
been
applied
sequence
circulating
tumor
DNA
(ctDNA).
Since
ctDNA
is
fragments
released
by
cells,
it
can
provide
molecular
profile
cancer.
Liquid
biopsy
be
all
stages
cancer
diagnosis
and
treatment,
allowing
non-invasive
real-time
monitoring
disease
development.
The
most
promising
aspects
applications
are
screening
early
because
they
lead
better
survival
results
less
burden.
Although
many
methods
have
enough
sensitivity
detect
extremely
low
levels
mutation
frequency
at
stage
cancer,
how
effectively
implement
them
population
settings
remains
challenging.
This
paper
focuses
on
application
introduces
NGS-related
methods,
reviews
progress,
summarizes
challenges,
discusses
future
research
directions.
Archives of Pathology & Laboratory Medicine,
Journal Year:
2018,
Volume and Issue:
142(3), P. 321 - 346
Published: Jan. 22, 2018
Context.—
In
2013,
an
evidence-based
guideline
was
published
by
the
College
of
American
Pathologists,
International
Association
for
Study
Lung
Cancer,
and
Molecular
Pathology
to
set
standards
molecular
analysis
lung
cancers
guide
treatment
decisions
with
targeted
inhibitors.
New
evidence
has
prompted
evaluation
additional
laboratory
technologies,
targetable
genes,
patient
populations,
tumor
types
testing.
Objective.—
To
systematically
review
update
2013
affirm
its
validity;
assess
new
genetic
discoveries,
therapies;
issue
update.
Design.—
The
convened
expert
panel
develop
help
define
key
questions
literature
search
terms,
abstracts
full
articles,
draft
recommendations.
Results.—
Eighteen
recommendations
were
drafted.
also
updated
3
from
guideline.
Conclusions.—
largely
reaffirmed
allow
testing
cytology
samples,
require
improved
assay
sensitivity,
recommend
against
use
immunohistochemistry
EGFR
Key
include
ROS1
all
adenocarcinoma
patients;
inclusion
genes
(ERBB2,
MET,
BRAF,
KRAS,
RET)
laboratories
that
perform
next-generation
sequencing
panels;
as
alternative
fluorescence
in
situ
hybridization
ALK
and/or
testing;
5%
sensitivity
assays
T790M
mutations
patients
secondary
resistance
inhibitors;
cell-free
DNA
“rule
in”
when
tissue
is
limited
or
hard
obtain.
New England Journal of Medicine,
Journal Year:
2018,
Volume and Issue:
379(18), P. 1754 - 1765
Published: Oct. 31, 2018
Interview
with
Dr.
Ryan
Corcoran
on
the
potential
clinical
applications
of
cell-free
DNA
analysis
in
patients
cancer.
(10:36)Download
The
capacity
to
detect
new
cancers,
treatment-resistant
variants,
and
tumor
heterogeneity
by
noninvasive
technology
basis
blood
promises
revolutionize
cancer
detection,
prevention,
treatment.
Journal of Clinical Oncology,
Journal Year:
2018,
Volume and Issue:
36(16), P. 1631 - 1641
Published: March 5, 2018
Purpose
Clinical
use
of
analytical
tests
to
assess
genomic
variants
in
circulating
tumor
DNA
(ctDNA)
is
increasing.
This
joint
review
from
ASCO
and
the
College
American
Pathologists
summarizes
current
information
about
clinical
ctDNA
assays
provides
a
framework
for
future
research.
Methods
An
Expert
Panel
conducted
literature
on
solid
tumors,
including
pre-analytical
variables,
validity,
interpretation
reporting,
validity
utility.
Results
The
search
identified
1,338
references.
Of
those,
390,
plus
31
references
supplied
by
Panel,
were
selected
full-text
review.
There
77
articles
inclusion.
Conclusion
evidence
indicates
that
testing
optimally
performed
plasma
collected
cell
stabilization
or
EDTA
tubes,
with
tubes
processed
within
6
hours
collection.
Some
have
demonstrated
utility
certain
types
advanced
cancer;
however,
there
insufficient
majority
cancer.
Evidence
shows
discordance
between
results
genotyping
specimens
supports
tissue
confirm
undetected
tests.
no
little
early-stage
cancer,
treatment
monitoring,
residual
disease
detection.
suggest
are
useful
cancer
screening,
outside
trial.
Given
rapid
pace
research,
re-evaluation
will
shortly
be
required,
along
development
tools
guidance
practice.
Molecular Cancer,
Journal Year:
2018,
Volume and Issue:
17(1)
Published: Feb. 15, 2018
Recent
advances
in
diagnosis
and
treatment
are
enabling
a
more
targeted
approach
to
treating
lung
cancers.
Therapy
targeting
the
specific
oncogenic
driver
mutation
could
inhibit
tumor
progression
provide
favorable
prognosis
clinical
practice.
Activating
mutations
of
epidermal
growth
factor
receptor
(EGFR)
non-small
cell
cancer
(NSCLC)
predictive
for
EGFR
tyrosine
kinase
inhibitors
(TKIs)
treatment.
For
patients
with
EGFR-exon
19
deletions
or
an
exon
21
Leu858Arg
mutation,
standard
first-line
is
first-generation
(gefitinib,
erlotinib),
second-generation
(afatinib)
TKIs.
TKIs
improve
response
rates,
time
progression,
overall
survival.
Unfortunately,
mutant
develop
disease
after
median
10
14
months
on
TKI.
Different
mechanisms
acquired
resistance
have
been
reported.
Optimal
various
not
yet
clearly
defined,
except
T790M
mutation.
Repeated
tissue
biopsy
important
explore
mechanisms,
but
it
has
limitations
risks.
Liquid
valid
alternative
re-biopsy.
Osimertinib
approved
T790M-positive
NSCLC
other
TKI-resistant
combination
therapy
may
be
considered.
In
addition,
use
immunotherapy
evolved
rapidly.
Understanding
clarifying
biology
EGFR-mutant
guide
future
drug
development,
leading
precise
JAMA Oncology,
Journal Year:
2018,
Volume and Issue:
4(11), P. 1527 - 1527
Published: Aug. 2, 2018
Osimertinib
mesylate
is
used
globally
to
treat
EGFR-mutant
non-small
cell
lung
cancer
(NSCLC)
with
tyrosine
kinase
inhibitor
resistance
mediated
by
the
EGFR
T790M
mutation.
Acquired
osimertinib
a
growing
clinical
challenge
that
poorly
understood.To
understand
molecular
mechanisms
of
acquired
and
their
behavior.Patients
advanced
NSCLC
who
received
for
T790M-positive
prior
were
identified
from
multi-institutional
cohort
(n
=
143)
confirmatory
trial
(NCT01802632)
110).
Next-generation
sequencing
tumor
biopsies
after
was
performed.
Genotyping
plasma
cell-free
DNA
studied
as
an
orthogonal
approach,
including
serial
samples
when
available.
The
study
analysis
finalized
on
November
9,
2017.Mechanisms
association
time
treatment
discontinuation
osimertinib.Of
143
patients
evaluated,
41
(28
[68%]
women)
had
next-generation
osimertinib.
Among
13
(32%)
maintained
at
resistance,
C797S
seen
in
9
(22%).
28
individuals
(68%)
loss
T790M,
range
competing
detected,
novel
such
KRAS
mutations
targetable
gene
fusions.
Time
shorter
(6.1
vs
15.2
months),
suggesting
emergence
pre-existing
resistant
clones;
this
finding
confirmed
validation
110
genotyping
performed
resistance.
In
studies
levels
mutant
EGFR,
associated
smaller
decrease
driver
mutation
1
3
weeks
therapy
(100%
83%
decrease;
P
.01).Acquired
early
mechanisms.
These
data
provide
evidence
heterogeneity
need
strategies
can
overcome
multiple
concomitant
or
preventing
Journal of Clinical Oncology,
Journal Year:
2017,
Volume and Issue:
35(12), P. 1341 - 1367
Published: Feb. 23, 2017
A
MESSAGE
FROM
ASCO’S
PRESIDENT
I
am
pleased
to
present
Clinical
Cancer
Advances
2017,
which
highlights
the
most
promising
advances
in
patient-oriented
cancer
research
over
past
year.
The
report
gives
us
an
opportunity
reflect
on
what
exciting
time
it
is
for
and
how
swiftly
our
understanding
of
has
improved.
One
year
ago,
White
House
announced
national
Moonshot
program
accelerate
progress
against
cancer.
This
shared
vision
reinvigorated
community,
identified
new
areas
scientific
collaboration,
raised
ambitions
regarding
may
be
possible
beyond
we
have
already
made.
When
entered
field
35
years
could
not
imagined
where
would
today.
We
can
now
detect
earlier,
target
treatments
more
effectively,
manage
adverse
effects
effectively
enable
patients
live
better,
fulfilling
lives.
Today,
two
three
people
with
at
least
5
after
diagnosis,
up
from
roughly
one
1970s.
resulted
decades
incremental
that
collectively
expanded
molecular
underpinnings
There
no
better
current
example
this
than
ASCO’s
2017
Advance
Year:
Immunotherapy
2.0.
Over
last
year,
there
been
a
wave
successes
immunotherapy.
Research
proven
approach
effective
wide
range
hard-to-treat
advanced
cancers
previously
considered
intractable.
Researchers
are
working
identify
biologic
markers
help
increase
effectiveness
treatment
determine
who
likely
benefit
knowledge
will
oncologists
make
evidence-based
decisions
so
as
many
might
type
treatment.
Each
successive
advance
builds
previous
hard
work
generations
basic,
translational,
clinical
researchers.
Importantly,
described
without
individuals
volunteered
participate
trials
part
their
To
turn
moonshot
into
meaningful
advances,
need
sustained,
robust
federal
funding
continued
innovation.
Approximately
30%
highlighted
was
funded,
part,
through
dollars
appropriated
National
Institutes
Health
or
Institute.
Without
investment—unique
internationally
scale,
duration,
impact
decades—I
fear
lose
forward
momentum
needed
further
see
report.
Federal
lawmakers
fuel
by
advancing
initiatives
facilitate
use
big
data
achieve
common
good
high-quality
care
all
patients.
Such
programs,
like
CancerLinQ,
rapidly
pace
dramatically
expand
reach
millions
living
today
do
future.
investment
yield
medical,
scientific,
economic,
societal
benefits
come.
Much
still
lies
ahead.
Many
questions
remain
about
develops
spreads
best
treat
it.
As
you
read
hope
inspired
gains
community
made
promise
era
just
horizon.
Daniel
F
Hayes,
MD,
FASCO,
FACP
ASCO
President,
2016
Journal of Clinical Oncology,
Journal Year:
2017,
Volume and Issue:
35(12), P. 1288 - 1296
Published: Feb. 21, 2017
Purpose
Osimertinib
is
an
irreversible
epidermal
growth
factor
receptor
(EGFR)
tyrosine
kinase
inhibitor
(TKI)
selective
for
both
EGFR-TKI
sensitizing
(
EGFRm)
and
T790M
resistance
mutations.
AURA
(NCT01802632)
a
phase
I/II
clinical
trial
to
determine
the
dose,
safety,
efficacy
of
osimertinib.
This
article
reports
results
from
II
extension
component.
Patients
Methods
with
EGFR-TKI–pretreated
EGFRm-
T790M-positive
advanced
non–small-cell
lung
cancer
(NSCLC)
received
once-daily
osimertinib
80
mg.
status
was
confirmed
by
central
testing
tumor
sample
taken
after
most
recent
disease
progression.
asymptomatic,
stable
CNS
metastases
that
did
not
require
corticosteroids
were
allowed
enroll.
The
primary
end
point
objective
response
rate
(ORR)
independent
radiology
assessment.
Secondary
points
control
rate,
duration
response,
progression-free
survival
(PFS),
safety.
Patient-reported
outcomes
comprised
exploratory
objective.
Results
In
total,
201
patients
treatment,
median
treatment
13.2
months
at
time
data
cutoff
(November
1,
2015).
evaluable
(n
=
198),
ORR
62%
(95%
CI,
54%
68%),
90%
85
94).
Median
in
122
responding
15.2
11.3
calculable).
PFS
12.3
9.5
13.8).
common
possibly
causally
related
adverse
events
(investigator
assessed)
diarrhea
(43%;
grade
≥
3,
<
1%)
rash
(grouped
terms;
40%;
1%).
Interstitial
terms)
reported
eight
(4%;
n
2;
3;
5,
3).
Conclusion
EGFRm
NSCLC
who
progress
provides
high
ORR,
encouraging
PFS,
durable
response.