Journal of Alzheimer s Disease Reports,
Journal Year:
2023,
Volume and Issue:
7(1), P. 957 - 972
Published: Aug. 22, 2023
Background:
While
Alzheimer’s
disease
(AD)
pathology
is
associated
with
altered
brain
structure,
it
not
clear
whether
gene
expression
changes
mirror
the
onset
and
evolution
of
in
distinct
regions.
Deciphering
mechanisms
which
cause
differential
manifestation
across
different
regions
has
potential
to
help
early
diagnosis.
Objective:
We
aimed
identify
common
unique
endotypes
their
regulation
tangle-free
neurons
sporadic
AD
(SAD)
six
regions:
entorhinal
cortex
(EC),
hippocampus
(HC),
medial
temporal
gyrus
(MTG),
posterior
cingulate
(PC),
superior
frontal
(SFG),
visual
(VCX).
Methods:
To
decipher
states
human
subjects
afflicted
AD,
we
performed
analysis
neural
transcriptome.
explored
expression,
functional
transcription
factor
target
enrichment,
co-expression
module
detection
discern
disease-state
transcriptomic
variances
characterize
endotypes.
Additionally,
compared
our
results
tangled
neuron
microarray-based
study
Allen
Brain
Atlas.
Results:
identified
impaired
function
EC,
MTG,
PC,
VCX
resulting
from
REST
activation
reversal
mature
a
precursor-like
state
SFG
linked
SOX2
activation.
decreased
increased
dedifferentiation
were
SUZ12.
Energetic
deficit
connected
NRF1
inactivation
was
found
HC,
VCX.
Conclusions:
Our
findings
suggest
that
SAD
varies
scale
severity
endotypes,
such
as
energetic
shortfalls,
neuronal
function,
dedifferentiation.
Glia,
Journal Year:
2024,
Volume and Issue:
72(9), P. 1544 - 1554
Published: June 5, 2024
Abstract
The
nervous
and
the
immune
systems
undergo
a
continuous
cross
talk,
starting
from
early
development
continuing
throughout
adulthood
aging.
Defects
in
this
talk
contribute
to
neurodevelopmental
neurodegenerative
diseases.
Microglia
are
resident
cells
brain
that
primarily
involved
bidirectional
communication.
Among
microglial
genes,
trem2
is
key
player,
controlling
functional
state
of
microglia
being
at
forefront
many
processes
require
interaction
between
other
components,
such
as
neurons
oligodendrocytes.
present
review
focuses
on
developmental
window,
describing
which
TREM2
involved,
including
modulation
synapse
formation
elimination,
control
neuronal
bioenergetic
states
well
contribution
myelination
circuit
formation.
By
causing
imbalances
during
these
maturation
phases,
dysfunctional
may
have
striking
impact
adult
brain,
making
it
more
sensitive
target
for
insults
occurring
Neurobiology of Disease,
Journal Year:
2024,
Volume and Issue:
199, P. 106550 - 106550
Published: June 6, 2024
Bioenergetics
describe
the
biochemical
processes
responsible
for
energy
supply
in
organisms.
When
these
changes
become
dysregulated
brain
development,
multiple
neurodevelopmental
diseases
can
occur,
implicating
bioenergetics
as
key
regulators
of
neural
development.
Historically,
discovery
disease
affecting
individual
stages
development
has
revealed
critical
roles
that
play
generating
nervous
system.
Bioenergetic-dependent
disorders
include
tube
closure
defects,
microcephaly,
intellectual
disability,
autism
spectrum
disorders,
epilepsy,
mTORopathies,
and
oncogenic
processes.
Developmental
timing
cell-type
specificity
determine
long-term
effects
bioenergetic
mechanisms
on
form
function.
Here,
we
discuss
metabolic
progenitor
specification,
neuronal
differentiation
(neurogenesis),
gliogenesis.
In
general,
transitions
between
glycolysis
oxidative
phosphorylation
are
regulated
early
oncogenesis,
reactive
oxygen
species
(ROS)
mitochondrial
maturity
later
differentiation.
We
also
how
interface
with
developmental
regulation
other
elements,
including
cerebrospinal
fluid
environment.
While
questions
remain
about
interplay
this
review
integrates
current
state
known
intersections
health
disease.
Life,
Journal Year:
2022,
Volume and Issue:
12(3), P. 401 - 401
Published: March 10, 2022
The
ATP
synthase
is
a
mitochondrial
inner
membrane
complex
whose
function
essential
for
cell
bioenergy,
being
responsible
the
conversion
of
ADP
into
and
playing
role
in
cristae
morphology
organization.
enzyme
composed
18
protein
subunits,
16
nuclear
DNA
(nDNA)
encoded
two
(mtDNA)
encoded,
organized
domains,
FO
F1.
Pathogenetic
variants
genes
encoding
structural
subunits
or
assembly
factors
are
fatal
human
diseases.
Emerging
evidence
also
underlines
ATP-synthase
neurodegenerative
diseases
as
Parkinson’s,
Alzheimer’s,
motor
neuron
such
Amyotrophic
Lateral
Sclerosis.
Post-translational
modification,
epigenetic
modulation
gene
expression
level,
mechanism
transition
pore
have
been
deemed
neuronal
death
vivo
vitro
models
In
this
review,
we
will
explore
physiological
pathological
conditions
by
referring
to
recent
cryo-EM
studies
exploring
disease
models.
Current Opinion in Biotechnology,
Journal Year:
2022,
Volume and Issue:
76, P. 102739 - 102739
Published: June 20, 2022
Biochemical
characterization
of
metabolism
provides
molecular
insights
for
understanding
biology
in
health
and
disease.
Over
the
past
decades,
metabolic
perturbations
have
been
implicated
cancer,
neurodegeneration,
diabetes,
among
others.
Isotope
tracing
is
a
technique
that
allows
tracking
labeled
atoms
within
metabolites
through
biochemical
reactions.
This
has
become
an
integral
component
contemporary
research.
measures
substrate
contribution
to
downstream
indicates
its
utilization
cellular
networks.
In
addition,
isotopic
labeling
data
are
necessary
quantitative
flux
analysis.
Here,
we
review
recent
work
utilizing
study
disease,
highlight
application
interrogate
subcellular,
intercellular,
vivo
metabolism.
We
further
discuss
current
challenges
opportunities
expand
utility
isotope
new
research
areas.
Cellular and Molecular Life Sciences,
Journal Year:
2025,
Volume and Issue:
82(1)
Published: Jan. 21, 2025
Abstract
Metabolism
is
a
fundamental
characteristic
of
life.
In
2010,
we
discovered
that
the
metabolic
enzyme
CTP
synthase
(CTPS)
can
assemble
snake
like
structure
inside
cells,
which
call
cytoophidium.
Including
CTPS,
an
increasing
number
enzymes
have
been
found
to
form
cytoophidia
in
cells.
However,
distribution
and
relationship
among
formed
by
different
remain
elusive.
Here
investigate
five
cytoophidia,
namely
Asn1,
Bna5,
CTPS
(i.e.
Ura7),
Glt1,
Prs5
Saccharomyces
cerevisiae
.
We
find
multiple
be
assembled
into
cytoophidium
complexes
docking
one
after
another.
Glt1
tend
non-quiescent
while
are
more
abundant
quiescent
cells
with
Asn1
cytoophidia.
Blocking
assembly
lead
phenotype
increase
Bna5
complex
them.
also
inhibits
NAD
biosynthesis
pathway,
includes
Sir2.
Consistent
this
result,
caused
blocking
rescued
assembly,
supplementing
nicotinic
acid,
or
overexpressing
Our
results
indicate
compositions
resonates
distinct
cell
fates.
Graphical
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 11, 2025
Abstract
Characterization
of
cell
type
emergence
during
human
cortical
development,
which
enables
unique
cognition,
has
focused
primarily
on
anatomical
and
transcriptional
characterizations.
Metabolic
processes
in
the
brain
that
allow
for
rapid
expansion,
but
contribute
to
vulnerability
neurodevelopmental
disorders,
remain
largely
unexplored.
We
performed
a
variety
metabolic
assays
primary
tissue
stem
derived
organoids
observed
dynamic
changes
core
functions,
including
an
unexpected
increase
glycolysis
late
neurogenesis.
By
depleting
glucose
levels
organoids,
we
increased
outer
radial
glia,
astrocytes,
inhibitory
neurons.
found
pentose
phosphate
pathway
(PPP)
was
impacted
these
experiments
leveraged
pharmacological
genetic
manipulations
recapitulate
glia
fate
changes.
These
data
identify
new
role
PPP
modulating
specification
generate
resource
future
exploration
additional
pathways
development.
Microbiology Spectrum,
Journal Year:
2025,
Volume and Issue:
unknown
Published: April 28, 2025
ABSTRACT
Wolbachia
pipientis
is
a
ubiquitous
intracellular
bacterium
that
known
for
its
manipulation
of
reproduction
in
arthropod
hosts.
has
also
been
shown
to
colonize
virtually
all
somatic
tissues,
including
the
brain,
but
little
about
interaction
between
host
and
these
locations.
To
this
end,
we
studied
effects
infection
on
brain
Drosophila
melanogaster
.
Using
comparative
proteomics,
uncovered
post-translational
modification
many
proteins
within
head
body
upon
infection,
with
glutamic
acid
decarboxylase
being
modified
only.
Given
enzyme’s
role
neurotransmitter
synthesis,
next
tested
how
impacts
behaviors
gamma
aminobutyric
(GABA)
production
We
discovered
an
improved
response
yeast
odors
-infected,
mated
females
compared
their
uninfected
counterparts.
Gross
measurements
GABA
whole
brains
showed
no
detectable
change
abundance
infection.
Treatments
antagonist
indicated
behavioral
was
not
GABA-dependent,
leaving
mechanism
behind
-mediated
changes
behavior
obscure.
multiple
protein
propose
model
which
drives
several
metabolic
increase
survival
specialized
niche
brain.
These
results
give
rise
new
questions
Wolbachia–Drosophila
relationship,
future
work
will
focus
through
confers
changes.
IMPORTANCE
In
order
fully
understand
biology
organism,
must
interactions
resident
microbes.
commonly
used
study
such
interactions,
molecular
hosts
are
well
understood,
especially
tissues.
Here,
address
knowledge
gap
by
characterizing
Our
provide
first
description
modifications
induced
host,
unveiling
level
regulation
–host
relationship.
The
be
connected
or
behavior,
indicating
another
enzyme
during
Altogether,
more
information
’s
tissue
spark
inquiries
into
host–bacterium
Journal of Cell Science,
Journal Year:
2023,
Volume and Issue:
136(16)
Published: Aug. 15, 2023
Bioenergetic
metabolism
is
a
key
regulator
of
cellular
function
and
signaling,
but
how
it
can
instruct
the
behavior
cells
their
fate
during
embryonic
development
remains
largely
unknown.
Here,
we
investigated
role
glucose
in
avian
trunk
neural
crest
(NCCs),
migratory
stem
cell
population
vertebrate
embryo.
We
uncovered
that
NCCs
display
oxidation
as
prominent
metabolic
phenotype,
contrast
to
what
seen
for
cranial
NCCs,
which
instead
rely
on
aerobic
glycolysis.
In
addition,
only
one
pathway
downstream
uptake
not
sufficient
NCC
development.
Indeed,
glycolysis,
mitochondrial
respiration
pentose
phosphate
are
all
mobilized
integrated
coordinated
execution
diverse
programs,
epithelial-to-mesenchymal
transition,
adhesion,
locomotion,
proliferation
differentiation,
through
regulation
specific
gene
expression.
absence
glucose,
OXPHOS
fueled
by
pyruvate
failed
promote
adaptation
environmental
stiffness,
stemness
maintenance
fate-decision
making.
These
findings
highlight
need
make
most
potential
meet
high
demands
appropriate
Cells,
Journal Year:
2024,
Volume and Issue:
13(18), P. 1541 - 1541
Published: Sept. 13, 2024
Ferroptosis
is
an
iron-dependent
form
of
programmed
cell
death
that
influenced
by
biological
processes
such
as
iron
metabolism
and
senescence.
As
brain
levels
increase
with
aging,
ferroptosis
also
implicated
in
the
development
age-related
pathologic
conditions
Alzheimer's
disease
(AD)
related
dementias
(ADRD).
Indeed,
inhibitors
have
been
shown
to
be
protective
models
degenerative
disorders
like
AD/ADRD.
Given
inaccessibility
living
human
for
metabolic
studies,
goal
this
work
was
characterize
vitro
model
understanding
how
aging
availability
influence
neuronal
ferroptosis.
First,
(SH-SY5Y)
mouse
(Neuro-2a)
neuroblastoma
lines
were
terminally
differentiated
into
mature
neurons
culturing
all-trans-retinoic
acid
at
least
72
h.
Despite
demonstrating
all
signs
differentiation
maturation,
including
increased
expression
storage
protein
ferritin,
we
discovered
conferred
resistance
both
lines.
Gene
data
indicates
their
capacity
protect
against
iron-mediated
oxidative
damage
augmenting
cystine
import,
subsequently
increasing
intracellular
cysteine
levels,
promote
glutathione
production
peroxidase
activity
(GPX).
In
support
hypothesis,
found
cysteine-depleted
media
sensitized
them
GPX4
inhibition,
these
effects
are
mitigated
supplementation.
Such
findings
important
they
provide
guidance
use
experimental
investigate
role
neurodegeneration
pathologies
ADRD.