Contribution of cuproptosis and immune-related genes to idiopathic pulmonary fibrosis disease
Chengji Jin,
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Jia Li,
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Qiaoyu Li
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et al.
Frontiers in Immunology,
Journal Year:
2025,
Volume and Issue:
16
Published: Feb. 7, 2025
Idiopathic
pulmonary
fibrosis
(IPF)
is
a
degenerative
respiratory
condition
characterized
by
significant
mortality
rates
and
scarcity
of
available
treatment
alternatives.
Cuproptosis,
novel
form
copper-induced
cell
death,
has
garnered
attention
for
its
potential
implications.
The
study
aimed
to
explore
the
diagnostic
value
cuproptosis-related
hub
genes
in
patients
with
IPF.
Additionally,
multiple
bioinformatics
analyses
were
employed
identify
immune-related
biomarkers
associated
diagnosis
IPF,
offering
valuable
insights
future
strategies.
Four
microarray
datasets
selected
from
Gene
Expression
Omnibus
(GEO)
collection
screening.
Differentially
expressed
(DEGs)
IPF
analyzed.
weighted
gene
coexpression
network
analysis
(WGCNA)
was
DEGs
most
Ultimately,
we
analyzed
five
assessed
their
both
training
validation
sets.
four
screened
using
protein-protein
interaction
(PPI)
evaluated
through
receiver
operating
characteristic
(ROC)
curve.
Lastly,
single-cell
RNA-seq
further
investigate
differential
distribution.
We
identified
total
92
DEGs.
Bioinformatics
highlighted
as
candidate
biomarkers,
including
three
upregulated
(CFH,
STEAP1,
HDC)
two
downregulated
(NUDT16
FMO5).
accuracy
these
cohort
confirmed
be
reliable.
that
demonstrated
strong
performance
CXCL12
showing
an
AUROC
0.90.
also
examined
relationship
between
immune
cells.
significantly
negatively
neutrophils,
while
CXCR2
exclusively
consistent
our
sequencing
results.
CTSG
showed
primarily
positive
association
follicular
helper
T,
SPP1
strongly
macrophages.
Finally,
data
revealed
highly
endothelial
subset
(ECs),
exhibited
high
expression
cellular
populations.
statistically
differences
monocyte
research
methodically
depicted
intricate
interplay
among
genes,
new
ideas
diagnosing
treating
Language: Английский
Puerarin ameliorates non-alcoholic fatty liver disease by inhibiting lipid metabolism through FMO5
Zhaoyi Li,
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Wenjing Cao,
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Yuxuan Zhang
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et al.
Frontiers in Pharmacology,
Journal Year:
2024,
Volume and Issue:
15
Published: July 11, 2024
Introduction:
Pueraria
lobata
is
traditionally
used
in
China
for
treatment
of
non-alcoholic
fatty
liver
disease
(NAFLD).
Puerarin,
a
functional
drug
extracted
from
,
features
pharmacological
activity.
The
present
study
aims
to
investigate
the
effect
puerarin
intervention
on
NAFLD.
Methods:
We
established
an
NAFLD
mouse
model
using
high-fat
diet
with
60%
fat
and
evaluated
impact
intervention.
Results
discussion:
Our
results
demonstrate
that
significantly
ameliorates
lipid
accumulation
protects
high-fat-induced
damage
while
reducing
oxidative
stress
levels
liver.
Furthermore,
downregulates
transcription
acetyl-CoA
carboxylase
(ACC1)
It
also
upregulates
carnitine
palmitoyltransferase
1
(CPT1),
peroxisome
proliferator-activated
receptor
alpha
(PPARα),
proliferators-activated
γ
coactivator
(PGC1α),
which
are
related
oxidation.
we
demonstrated
flavin-containing
monooxygenase
(FMO5)
was
involved
protective
against
NFALD.
In
conclusion,
beneficial
showed
could
prevent
injury
caused
by
via
activating
FMO5.
These
findings
provide
new
theoretical
basis
applying
as
therapeutic
agent
Language: Английский
The Impact of SLC2A8 RNA Interference on Glucose Uptake and the Transcriptome of Human Trophoblast Cells
Cells,
Journal Year:
2024,
Volume and Issue:
13(5), P. 391 - 391
Published: Feb. 24, 2024
While
glucose
is
the
primary
fuel
for
fetal
growth,
placenta
utilizes
majority
of
taken
up
from
maternal
circulation.
Of
facilitative
transporters
in
placenta,
SLC2A8
(GLUT8)
thought
to
primarily
function
as
an
intracellular
transporter;
however,
its
trophoblast
cells
has
not
been
determined.
To
gain
insight
into
lentiviral-mediated
RNA
interference
(RNAi)
was
performed
human
first-trimester
cell
line
ACH-3P.
Non-targeting
sequence
controls
(NTS
RNAi;
n
=
4)
and
RNAi
(n
infected
ACH-3P
were
compared.
A
79%
reduction
mRNA
concentration
associated
with
11%
(p
≤
0.05)
uptake.
NTS
subjected
RNAseq,
identifying
1525
transcripts
that
differentially
expressed
(|log2FC|
>
1
adjusted
p-value
<
0.05),
273
derived
protein-coding
genes,
change
10
these
mRNAs
validated
by
real-time
qPCR.
Additionally,
there
147
long
non-coding
RNAs.
Functional
analyses
revealed
genes
involved
various
metabolic
pathways
cellular
respiration,
oxidative
phosphorylation,
ATP
synthesis.
Collectively,
data
indicate
deficiency
may
impact
placental
uptake
glucose,
but
likely
support
respiration.
Since
oxidizes
it
takes
own
needs,
impairment
could
set
stage
functional
insufficiency.
Language: Английский
Flavin‐containing monooxygenase (FMO): Beyond xenobiotics
Ajay Bhat,
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Faith R. Carranza,
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Angela M. Tuckowski
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et al.
BioEssays,
Journal Year:
2024,
Volume and Issue:
46(7)
Published: May 7, 2024
Flavin-containing
monooxygenases
(FMOs),
traditionally
known
for
detoxifying
xenobiotics,
are
now
recognized
their
involvement
in
endogenous
metabolism.
We
recently
discovered
that
an
isoform
of
FMO,
fmo-2
Caenorhabditis
elegans,
alters
metabolism
to
impact
longevity
and
stress
tolerance.
Increased
expression
C.
elegans
modifies
the
flux
through
key
pathway
as
One
Carbon
Metabolism
(OCM).
This
modified
results
a
decrease
ratio
S-adenosyl-methionine
(SAM)
S-adenosyl-homocysteine
(SAH),
consequently
diminishing
methylation
capacity.
Here
we
discuss
how
FMO-2-mediated
formate
production
during
tryptophan
may
serve
trigger
changing
OCM.
suggest
bridges
OCM,
altering
metabolic
away
from
overexpression.
Additionally,
highlight
these
intersect
with
mTOR
AMPK
pathways,
addition
mitochondrial
In
conclusion,
goal
this
essay
is
bring
attention
central
role
FMO
enzymes
but
lack
understanding
mechanisms.
justify
call
deeper
enzyme's
rewiring
tryptophan/formate
or
other
yet
unidentified
substrates.
emphasize
identification
novel
drugs
microbes
induce
activity
extend
lifespan.
Language: Английский
Practical Aspects of Flavin-Containing Monooxygenase-Mediated Metabolism
Chemical Research in Toxicology,
Journal Year:
2024,
Volume and Issue:
37(11), P. 1776 - 1793
Published: Nov. 1, 2024
Hepatic
flavin-containing
monooxygenase
3
(FMO3)
is
arguably
the
most
important
FMO
in
humans
from
standpoint
of
drug
metabolism.
Recently,
adult
hepatic
FMO3
has
been
linked
to
several
conditions
including
cardiometabolic
diseases,
aging,
obesity,
and
atherosclerosis
small
animals.
Despite
importance
chemical
metabolism,
relative
cytochrome
P-450
(CYP),
fewer
studies
have
published
describing
This
may
be
due
properties
human
FMO3.
For
example,
thermally
labile,
often
methods
reported
study
are
not
optimal.
Herein,
I
describe
some
practical
aspects
for
studying
other
FMOs.
Language: Английский