PLoS ONE,
Journal Year:
2014,
Volume and Issue:
9(11), P. e112843 - e112843
Published: Nov. 11, 2014
The
use
of
phylogenetic
information
in
community
ecology
and
conservation
has
grown
recent
years.
Two
key
issues
for
phylogenetics
studies,
however,
are
(i)
low
terminal
resolution
(ii)
arbitrarily
defined
species
pools.We
used
three
DNA
barcodes
(plastid
regions
rbcL,
matK,
trnH-psbA)
to
infer
a
phylogeny
527
native
naturalized
trees
Puerto
Rico,
representing
the
vast
majority
entire
tree
flora
island
(89%).
We
maximum
likelihood
(ML)
approach
with
without
constraint
that
enforced
monophyly
recognized
plant
orders.
Based
on
50%
consensus
trees,
ML
analyses
improved
relative
comparable
generated
Phylomatic
(proportion
internal
nodes
resolved:
constrained
=
74%,
unconstrained
68%,
52%).
quantified
composition
15
protected
forests
Rico
using
phylogenies.
found
some
evidence
communities
areas
high
water
stress
were
relatively
phylogenetically
clustered.
Reducing
scale
at
which
pool
was
(from
soil
types)
changed
our
results
depending
(ML
vs.
Phylomatic)
used.
Overall,
increased
provided
by
revealed
additional
patterns
not
observed
less-resolved
phylogeny.With
barcode
presented
here
(based
an
island-wide
pool),
we
show
more
fully
resolved
increases
power
detect
nonrandom
several
Rican
communities.
Especially
if
combined
functional
traits
geographic
distributions,
this
will
facilitate
stronger
inferences
about
role
historical
processes
governing
assembly
forests,
provide
insight
into
Caribbean
biogeography,
(iii)
aid
incorporating
evolutionary
history
planning.
Journal of Ecology,
Journal Year:
2014,
Volume and Issue:
102(2), P. 275 - 301
Published: Feb. 19, 2014
Summary
The
leaf
economics
spectrum
(LES)
provides
a
useful
framework
for
examining
species
strategies
as
shaped
by
their
evolutionary
history.
However,
that
spectrum,
originally
described,
involved
only
two
key
resources
(carbon
and
nutrients)
one
of
three
economically
important
plant
organs.
Herein,
I
evaluate
whether
the
idea
can
be
broadly
extended
to
water
–
third
resource
–stems,
roots
entire
plants
individual,
community
ecosystem
scales.
My
overarching
hypothesis
is
strong
selection
along
trait
trade‐off
axes,
in
tandem
with
biophysical
constraints,
results
convergence
any
taxon
on
uniformly
fast,
medium
or
slow
strategy
(i.e.
rates
acquisition
processing)
all
organs
resources.
Evidence
economic
spectra
exists
stems
well
leaves,
traits
related
carbon
nutrients.
These
apply
generally
within
across
scales
(within
communities,
climate
zones,
biomes
lineages).
There
are
linkages
coupling
among
resources,
resulting
an
integrated
whole‐plant
spectrum.
Species
capable
moving
rapidly
have
low
tissue
density,
short
life
span
high
flux
at
organ
individual
reverse
true
strategy.
Different
may
different
conditions,
but
being
fast
respect
requires
others,
general
feature
species.
Economic
influence
performance
fitness
consistent
trait‐based
theory
about
underlying
adaptive
mechanisms.
Traits
help
explain
differences
growth
survival
gradients
thus
distribution
assembly
communities
light,
nutrient
gradients.
scale
up
associated
faster
processes
such
decomposition
primary
productivity,
process
rates.
Synthesis
.
matter.
A
single
‘fast–slow’
integrates
universe
helps
ecological
strategies,
functioning
ecosystems.
Functional Ecology,
Journal Year:
2014,
Volume and Issue:
29(5), P. 592 - 599
Published: Sept. 16, 2014
Summary
One
of
the
most
pervasive
concepts
in
study
community
assembly
is
metaphor
environmental
filter,
which
refers
to
abiotic
factors
that
prevent
establishment
or
persistence
species
a
particular
location.
The
has
its
origins
change
during
succession
and
plant
dynamics,
although
it
gained
considerable
attention
recently
as
part
surge
interest
functional
trait
phylogenetic‐based
approaches
communities.
While
filtering
clear
utility
some
circumstances,
been
challenging
reconcile
concept
with
recent
developments
ecological
theory
related
coexistence.
These
advances
suggest
evidence
used
many
studies
assess
insufficient
distinguish
from
outcome
biotic
interactions.
We
re‐examine
perspective
coexistence
theory.
In
an
effort
move
discussion
forward,
we
present
simple
framework
for
considering
role
environment
shaping
membership,
review
literature
document
typically
highlight
research
challenges
address
coming
years.
current
usage
term
empirical
likely
overstates
tolerances
play
structure.
recommend
‘environmental
filtering’
only
be
refer
cases
where
prevents
absence
interactions,
15%
our
presented
such
evidence.
Finally,
urge
ecologists
consider
additional
mechanisms
aside
by
can
shape
pattern.
Annual Review of Ecology Evolution and Systematics,
Journal Year:
2012,
Volume and Issue:
43(1), P. 227 - 248
Published: Aug. 30, 2012
Although
research
on
the
role
of
competitive
interactions
during
community
assembly
began
decades
ago,
a
recent
revival
interest
has
led
to
new
discoveries
and
opportunities.
Using
contemporary
coexistence
theory
that
emphasizes
stabilizing
niche
differences
relative
fitness
differences,
we
evaluate
three
empirical
approaches
for
studying
assembly.
We
show
experimental
manipulations
abiotic
or
biotic
environment,
assessments
trait-phylogeny-environment
relationships,
investigations
frequency-dependent
population
growth
all
suggest
strong
influences
outcome
plant
Nonetheless,
due
limitations
these
applied
in
isolation,
still
have
poor
understanding
which
axes
traits
determine
competition
structure.
Combining
current
represents
our
best
chance
achieving
this
goal,
is
fundamental
conceptual
ecology
management
communities
under
global
change.
Science,
Journal Year:
2011,
Volume and Issue:
333(6050), P. 1755 - 1758
Published: Sept. 22, 2011
Understanding
spatial
variation
in
biodiversity
along
environmental
gradients
is
a
central
theme
ecology.
Differences
species
compositional
turnover
among
sites
(β
diversity)
occurring
are
often
used
to
infer
the
processes
structuring
communities.
Here,
we
show
that
sampling
alone
predicts
changes
β
diversity
caused
simply
by
sizes
of
pools.
For
example,
forest
inventories
sampled
latitudinal
and
elevational
well-documented
pattern
higher
tropics
at
low
elevations.
However,
after
correcting
for
pooled
richness
(γ
diversity),
these
differences
disappear.
Therefore,
there
no
need
invoke
mechanisms
community
assembly
temperate
versus
tropical
systems
explain
global-scale
patterns
diversity.
Proceedings of the National Academy of Sciences,
Journal Year:
2014,
Volume and Issue:
111(38), P. 13715 - 13720
Published: Sept. 15, 2014
The
phyllosphere--the
aerial
surfaces
of
plants,
including
leaves--is
a
ubiquitous
global
habitat
that
harbors
diverse
bacterial
communities.
Phyllosphere
communities
have
the
potential
to
influence
plant
biogeography
and
ecosystem
function
through
their
on
fitness
hosts,
but
host
attributes
drive
community
assembly
in
phyllosphere
are
poorly
understood.
In
this
study
we
used
high-throughput
sequencing
quantify
structure
leaves
57
tree
species
neotropical
forest
Panama.
We
tested
for
relationships
between
functional
traits,
taxonomy,
phylogeny
hosts.
Bacterial
tropical
were
diverse;
from
individual
trees
more
than
400
taxa.
dominated
by
core
microbiome
taxa
Actinobacteria,
Alpha-,
Beta-,
Gammaproteobacteria,
Sphingobacteria.
Host
taxonomic
identity,
phylogeny,
growth
mortality
rates,
wood
density,
leaf
mass
per
area,
nitrogen
phosphorous
concentrations
correlated
with
leaves.
relative
abundances
several
suites
traits
related
major
axes
trait
variation,
economics
spectrum
density-growth/mortality
tradeoff.
These
correlations
diversity
growth,
mortality,
suggest
incorporating
information
plant-microbe
associations
will
improve
our
ability
understand
drivers
variation
function.
Ecology Letters,
Journal Year:
2012,
Volume and Issue:
15(7), P. 637 - 648
Published: May 15, 2012
Phylogenetic
diversity
(PD)
describes
the
total
amount
of
phylogenetic
distance
among
species
in
a
community.
Although
there
has
been
substantial
research
on
factors
that
determine
community
PD,
exploration
consequences
PD
for
ecosystem
functioning
is
just
beginning.
We
argue
may
be
useful
predicting
functions
range
communities,
from
single-trophic
to
complex
networks.
Many
traits
show
signal,
suggesting
can
estimate
functional
trait
space
community,
and
thus
functioning.
Phylogeny
also
determines
interactions
species,
so
could
help
predict
how
extinctions
cascade
through
ecological
networks
impact
functions.
initial
evidence
available
suggests
patterns
consistent
with
these
predictions,
we
caution
utility
depends
critically
strength
signals
both
interactions.
advocate
synthetic
approach
incorporates
deeper
understanding
are
shaped
by
evolution,
outline
key
areas
future
research.
If
complexities
incorporated
into
studies,
relationships
between
function
bear
promise
conceptually
unifying
evolutionary
biology
ecology.
Ecology Letters,
Journal Year:
2013,
Volume and Issue:
16(10), P. 1294 - 1306
Published: Aug. 4, 2013
Abstract
Recent
functional
trait
studies
have
shown
that
differences
may
favour
certain
species
(environmental
filtering)
while
simultaneously
preventing
competitive
exclusion
(niche
partitioning).
However,
phenomenological
trait‐dispersion
analyses
do
not
identify
the
mechanisms
generate
niche
partitioning,
trait‐based
prediction
of
future
changes
in
biodiversity.
We
argue
such
predictions
require
linking
traits
with
recognised
coexistence
involving
spatial
or
temporal
environmental
heterogeneity,
resource
partitioning
and
natural
enemies.
first
demonstrate
limitations
approaches
using
simulations,
then
(1)
propose
tests
coexistence,
(2)
hypotheses
about
which
plant
are
likely
to
interact
particular
(3)
review
literature
for
evidence
these
hypotheses.
Theory
data
suggest
all
four
classes
could
act
on
variation,
but
some
will
be
stronger
more
widespread
than
others.
The
highest
priority
research
is
interactions
between
heterogeneity
variation
measure
variables
at
within‐community
scales
quantify
species'
responses
environment
absence
competition.
Evidence
similar
operate
many
ecosystems
would
simplify
biodiversity
forecasting
represent
a
rare
victory
generality
over
contingency
community
ecology.
Proceedings of the National Academy of Sciences,
Journal Year:
2014,
Volume and Issue:
111(17), P. 6341 - 6346
Published: April 14, 2014
Significance
Microbes
control
vital
ecosystem
processes
like
carbon
storage
and
nutrient
recycling.
Although
megadiversity
is
a
hallmark
of
microbial
communities
in
nature,
we
still
do
not
know
how
diversity
determines
function.
We
addressed
this
issue
by
isolating
different
geographic
local
hypothesized
to
shape
fungal
community
composition
activity
pine
forests
across
the
continental
United
States.
soil
enzyme
varied
soils
according
resource
availability,
was
similar
communities.
These
observations
indicate
that
much
plays
an
equal
role
biogeochemical
cycles.
However,
vary
dramatically
space,
indicating
individual
species
are
endemic
bioregions
within
North
American
continent.
Journal of Ecology,
Journal Year:
2012,
Volume and Issue:
100(6), P. 1422 - 1433
Published: Oct. 19, 2012
Summary
Understanding
how
environmental
factors
drive
plant
community
assembly
remains
a
major
challenge
in
ecology.
The
strength
of
different
processes
along
gradients,
such
as
filtering
and
functional
niche
differentiation,
can
be
quantified
by
analysing
trait
distributions
communities.
While
affects
species
occurrence
among
communities,
divergence
or
convergence
is
strongly
related
to
abundances
within
which
few
studies
have
taken
into
account.
We
examine
the
trait‐mediated
effect
these
two
stress‐resource
gradient.
measured
eight
traits
vegetative
regenerative
phases
communities
gradient
soil
depth
resource
availability
Mediterranean
rangelands.
filtering,
defined
local
restriction
range,
divergence,
based
on
abundance‐weighted
variance,
using
two‐step
approach
with
specifically
designed
null
models.
Communities
presented
clear
response
gradient,
evidenced
strong
trends
community‐weighted
means.
detected
at
both
ends
suggesting
that,
contrary
widespread
expectations,
may
not
necessarily
result
abiotic
under
harsh
conditions
but
could
likely
also
from
biotic
interactions
productive
habitats.
found
marked
shifts
abundance
Vegetative
(e.g.
leaf
dry
matter
content)
diverged
shallow
soils,
reflecting
coexistence
distinct
water‐
nutrient‐use
strategies
constrained
habitats
converged
increasing
availability.
By
contrast,
seed
mass)
tended
diverge
towards
deeper
while
reproductive
heights
all
Synthesis
:
Our
study
highlights
combination
data
capturing
niches
critical
detection
complex
responses
gradients.
demonstrate
that
patterns
are
contingent
environment
there
no
expectation
simple
trend
decreasing