Comparative Genomics of Bifidobacterium animalis subsp. lactis Reveals Strain-Level Hyperdiversity, Carbohydrate Metabolism Adaptations, and CRISPR-Mediated Phage Immunity
Özge Can,
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Ismail Gumustop,
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Ibrahim Genel
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et al.
Fermentation,
Journal Year:
2025,
Volume and Issue:
11(4), P. 179 - 179
Published: March 31, 2025
Several
strains
of
Bifidobacterium
animalis
subsp.
lactis
are
blockbusters
commercial
dietary
supplement
cocktails,
widely
recognized
for
their
probiotic
properties
and
found
in
various
ecological
niches.
The
present
study
aimed
to
perform
an
in-depth
comparative
genomic
analysis
on
71
B.
isolated
from
diverse
sources,
including
human
animal
feces,
breast
milk,
fermented
foods,
supplements,
better
elucidate
the
strain
level
diversity
biotechnological
potential
this
species.
average
genome
size
was
be
1.93
±
0.05
Mb,
with
a
GC
content
60.45%
0.2,
1562
41.3
coding
sequences
(CDS),
53.4
1.6
tRNA
genes.
A
revealed
significant
genetic
among
strains,
core
showing
that
34.7%
total
genes
were
conserved,
while
pan-genome
remained
open,
indicating
ongoing
gene
acquisition.
Functional
annotation
through
EggNOG-Mapper
CAZYme
clustering
highlighted
metabolic
capabilities,
particularly
carbohydrate
metabolism.
Nearly
all
(70
71)
harbor
CRISPR-Cas
adaptive
immune
systems
(predominantly
Type
I-E
subtype),
underscoring
ubiquity
phage
defense
mechanism
spacer
distinct
strain-specific
CRISPR
profiles,
certain
sharing
identical
spacers
correlate
common
phylogenetic
clades
or
similar
isolation
sources—an
indication
exposure
same
populations
shared
selective
pressures.
These
findings
highlight
dynamic
co-evolution
between
its
bacteriophages
across
niches
point
leveraging
native
future
applications.
Our
enhance
our
understanding
functional
lactis,
providing
valuable
insights
use
probiotics
foods.
Language: Английский
Optimizing Cancer Treatment Through Gut Microbiome Modulation
Kyuri Kim,
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Mingyu Lee,
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Yoojin Shin
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et al.
Cancers,
Journal Year:
2025,
Volume and Issue:
17(7), P. 1252 - 1252
Published: April 7, 2025
The
gut
microbiome
plays
a
pivotal
role
in
modulating
cancer
therapies,
including
immunotherapy
and
chemotherapy.
Emerging
evidence
demonstrates
its
influence
on
treatment
efficacy,
immune
response,
resistance
mechanisms.
Specific
microbial
taxa
enhance
checkpoint
inhibitor
while
dysbiosis
can
contribute
to
adverse
outcomes.
Chemotherapy
effectiveness
is
also
influenced
by
composition,
with
engineered
probiotics
prebiotics
offering
promising
strategies
drug
delivery
reduce
toxicity.
Moreover,
metabolites,
such
as
short-chain
fatty
acids,
systems
have
shown
potential
improve
therapeutic
responses.
These
findings
underscore
the
importance
of
personalized
microbiome-based
approaches
optimizing
treatments.
Language: Английский
Polystyrene microplastics impair brown and beige adipocyte function via the gut microbiota-adipose tissue crosstalk in high-fat diet mice
Journal of Hazardous Materials,
Journal Year:
2025,
Volume and Issue:
unknown, P. 138225 - 138225
Published: April 1, 2025
Language: Английский
Association of cardiovascular health with morbidity and mortality among U.S. adults with osteoarthritis: a population-based study
BMC Public Health,
Journal Year:
2025,
Volume and Issue:
25(1)
Published: April 30, 2025
Language: Английский
Exploring the lipid-lowering effects of cinnamic acid and cinnamaldehyde from the perspective of gut microbiota and metabolites
Food & Function,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Jan. 1, 2025
The
increasing
incidence
and
associated
metabolic
complications
pose
major
challenges
in
the
treatment
of
hyperlipidaemia.
Cinnamon
is
a
food
medicinal
resource
with
lipid
metabolism,
but
mechanism
by
which
its
active
components,
cinnamic
acid
(CA)
cinnamaldehyde
(CM),
alleviate
hyperlipidaemia
remains
unclear.
Biochemical,
pathological,
gut
microbiota,
metabolomic
analyses
were
performed
to
investigate
effects
CA
CM
on
HFD-fed
mice
underlying
mechanisms
involved.
Supplementation
reduced
body
weight,
liver,
adipose
tissue
accumulation
HFD-induced
mice;
improved
glucose
metabolism;
decreased
inflammation
oxidative
stress
levels,
showing
superior
efficacy.
Faecal
microbiota
transplantation
confirmed
that
therapeutic
effect
was
closely
related
core
bacteria
metabolites.
Specifically,
inhibited
growth
metabolism-related
genera
(e.g.,
Turicibacter
Romboutsia)
metabolites
PC,
LysoPCs,
prostaglandin
E2,
arachidonic
acid)
while
promoting
beneficial
Oscillospiraceae
Colidextribacter)
linoleic
acid,
phytosphingosine,
stercobilin).
Additionally,
Spearman's
correlation
analysis
revealed
serum
hepatic
lipids,
as
well
inflammatory
factors,
positively
correlated
Erysipelatoclostridium,
Turicibacter,
Eubacterium
fissicatena,
Enterorhabdus,
cervonoyl
ethanolamide,
acetoxystachybotrydial
acetate,
whereas
they
negatively
Lachnospiraceae
NK4A136,
stercobilin,
LysoPE
(15:0/0:0),
phytosphingosine.
In
contrast,
markers
exhibited
opposite
pattern.
conclusion,
have
potential
regulate
improve
metabolism
decrease
levels.
Language: Английский