The
big-data
analysis
of
multi-omics
data
associated
with
maize
genomes
is
increasingly
utilized
to
accelerate
genetic
research
and
improve
agronomic
traits.
As
a
result,
efforts
have
increased
integrate
diverse
datasets
extract
meaning
from
these
measurements.
For
my
Ph.D.
dissertation,
I
evaluated
the
current
pitfalls
integration
built
platforms
that
automatically
analyze
omics'
datasets.
One
such
platform
qTeller,
now
designed
handle
pan-genome
level
transcriptomics
proteomics
meaningful
interpretation
them
by
providing
an
interactive
user
interface.
Although
genomics
been
more
extensively
used,
other
omics
technologies,
as
epigenomics,
variomics,
proteomics,
are
often
incorporated
into
standard
methodologies.
Therefore,
fully
automated
platform,
called
Maize
Feature
Store
(MFS),
allows
complex
construct
models
can
be
used
predict
gene
traits
or
annotations.
To
demonstrate
utility
MFS,
critically
discussed
application
MFS
in
using
only
single
genome
(B73v5)
case
study.
also
aim
utilize
large-scale
solve
several
biological
problems
phenome.
continue
improving
tools
assisting
users
implementing
them.
Biology,
Journal Year:
2023,
Volume and Issue:
12(8), P. 1120 - 1120
Published: Aug. 11, 2023
Rhizome
growth
and
development
is
regulated
by
phytohormone.
However,
endogenous
phytohormones
affect
rhizome
initiation,
sustained
in
perennial
grass
species
remains
elusive.
In
this
study,
we
investigated
the
morphological
characteristics
content
of
indole-3-acetic
acid
(IAA),
zeatin
(ZT),
gibberellic
(GA3),
abscisic
(ABA)
rhizomes
two
different
Kentucky
bluegrass.
Using
ultra-performance
liquid
chromatography/tandem
mass
spectrometry
(UPLC-MS/MS),
performed
metabolite
analysis
rhizomes.
our
multi-rhizome
bluegrass
material
‘Yuzhong’
had
an
average
1113
rhizomes,
while
few-rhizome
‘Anding’
347
The
diameter
length
internode
were
1.68-fold
1.33-fold
higher
than
that
‘Anding’,
respectively.
dry
weight
was
75.06
g,
20.79
g.
a
ZT
(5.50
μg·g−1),
which
2.4-fold
(2.27
μg·g−1).
contrast,
IAA,
ABA,
GA3
markedly
‘Yuzhong’.
Correlation
revealed
significant
correlations
between
ZT/ABA
with
number
rhizome,
internode,
whereas
GA3,
IAA/ZT
opposite.
metabolic
profiles,
identified
163
differentially
expressed
metabolites
(DEMs)
(60
upregulated
103
downregulated)
positive
ion
mode
75
DEMs
(36
39
negative
mode.
Histidine
metabolism
ABC
transporters
pathways
most
significantly
enriched
mode,
respectively,
both
are
involved
synthesis
transport
cytokinin.
These
results
indicate
cytokinin
crucial
for
promotes
germination
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Aug. 21, 2023
Abstract
Climate
anomalies
pose
strong
selection
which
can
lead
to
rapid
evolution.
These
global
mean
trends
occur
on
a
backdrop
of
interannual
variability
that
might
weaken
or
even
reverse
selection.
However,
the
impact
climatic
evolution
is
rarely
considered.
We
study
through
seven-year
period
encompassing
severe
drought
across
12
populations
Mimulus
cardinalis
(scarlet
monkeyflower).
Plants
were
grown
in
common
greenhouse
environment
under
wet
and
dry
treatments,
where
specific
leaf
area
date
flowering
measured.
compare
ability
different
climate
metrics
explain
trait
values,
examining
time-periods,
including
collection
year,
prior
years,
cumulative
sequential
years.
find
annual
precipitation
best
describe
over
our
period.
Past
climates,
one-to
two-years
ago,
are
often
related
values
conflicting
direction
collection-year
climate.
Uncovering
these
complex
impacts
critical
better
predict
interpret
change.
Os
mecanismos
epigenéticos
conferem
às
plantas
recursos
que
possibilitam
a
adaptação
ambientes
específicos
e,
consequentemente,
diferentes
estresses,
aumentando
sua
capacidade
de
sobrevivência.Na
biologia
das
plantas,
metilação
do
DNA
desempenha
um
papel
crucial,
influenciando
seu
desenvolvimento,
resposta
ao
estresse,
aclimatação
e
adaptação.Nessa
perspectiva,
The
big-data
analysis
of
multi-omics
data
associated
with
maize
genomes
is
increasingly
utilized
to
accelerate
genetic
research
and
improve
agronomic
traits.
As
a
result,
efforts
have
increased
integrate
diverse
datasets
extract
meaning
from
these
measurements.
For
my
Ph.D.
dissertation,
I
evaluated
the
current
pitfalls
integration
built
platforms
that
automatically
analyze
omics'
datasets.
One
such
platform
qTeller,
now
designed
handle
pan-genome
level
transcriptomics
proteomics
meaningful
interpretation
them
by
providing
an
interactive
user
interface.
Although
genomics
been
more
extensively
used,
other
omics
technologies,
as
epigenomics,
variomics,
proteomics,
are
often
incorporated
into
standard
methodologies.
Therefore,
fully
automated
platform,
called
Maize
Feature
Store
(MFS),
allows
complex
construct
models
can
be
used
predict
gene
traits
or
annotations.
To
demonstrate
utility
MFS,
critically
discussed
application
MFS
in
using
only
single
genome
(B73v5)
case
study.
also
aim
utilize
large-scale
solve
several
biological
problems
phenome.
continue
improving
tools
assisting
users
implementing
them.
