bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: Nov. 27, 2022
Abstract
The
study
of
functional
diversity
(FD)
provides
ways
to
understand
phenomena
as
complex
community
assembly
or
the
dynamics
biodiversity
change
under
multiple
pressures.
Different
frameworks
are
used
quantify
FD,
either
based
on
dissimilarity
matrices
(e.g.,
Rao
entropy,
dendrograms)
multidimensional
spaces
(e.g.
convex
hulls,
kernel-density
hypervolumes).
While
first
does
not
enable
measurement
FD
within
a
richness/divergence/regularity
framework,
results
in
distortion
space,
latter
allow
for
comparisons
with
phylogenetic
(PD)
measures
and
can
be
extremely
sensitive
outliers.
We
propose
use
neighbor-joining
trees
(NJ)
represent
way
that
combines
strengths
current
without
many
their
weaknesses.
Our
proposal
is
also
uniquely
suited
studies
compare
PD,
both
share
(NJ
others)
same
mathematical
principles.
test
ability
this
novel
framework
initial
distances
between
species
minimal
space
sensitivity
using
NJ
compared
conventional
dendrograms,
hypervolumes
simulated
empirical
datasets.
Using
we
demonstrate
it
possible
combine
much
flexibility
provided
by
simplicity
tree-based
representations.
Moreover,
method
directly
comparable
PD
measures,
enables
quantification
richness,
divergence
regularity
space.
Conservation Science and Practice,
Journal Year:
2022,
Volume and Issue:
4(11)
Published: Oct. 6, 2022
Abstract
Effective
conservation
of
at‐risk
species
presents
a
conundrum,
often
requiring
rapid
status
assessments
and
timely
actions
regardless
the
adequacy
best
available
information.
Here,
we
present
case
study
on
Humboldt
martens
(
Martes
caurina
humboldtensis
),
rare
cryptic
carnivore
listed
as
threatened
in
2020
under
United
States
Endangered
Species
Act.
Given
their
rarity,
many
aspects
marten
population
ecology
remain
understudied.
To
help
inform
conservation,
conducted
exploratory
analyses
to
estimate
growth
by
incorporating
empirically
derived
data
into
two
demographic
modeling
approaches.
Population
rates
from
each
approach
exhibited
substantial
variability
were
uninformative
evaluating
status.
Our
results
highlight
inherent
difficulties
studying
animals
exemplify
issues
using
sparse
or
uncertain
potentially
consequential
circumstances.
Considering
shortcomings
our
findings,
provide
framework
reliable
improve
future
outcomes
for
poorly‐understood
species.
Zoological Journal of the Linnean Society,
Journal Year:
2023,
Volume and Issue:
198(2), P. 494 - 508
Published: Feb. 13, 2023
Abstract
There
is
a
secret
pleasure
in
naming
new
species.
Besides
traditional
etymologies
recalling
the
sampling
locality,
habitat
or
morphology
of
species,
names
may
be
tributes
to
some
meaningful
person,
pop
culture
references
and
even
exercises
enigmatography.
Using
dataset
48
464
spider
etymologies,
we
tested
hypothesis
that
species
given
by
taxonomists
are
deeply
influenced
their
cultural
background.
Specifically,
asked
whether
practices
change
through
space
have
changed
time.
In
absolute
terms,
referring
were
most
frequently
used.
relative
peaked
1850–1900
then
began
decline,
with
parallel
increase
dedicated
people
geography.
We
also
observed
dramatic
other
aspects
2000–2020,
especially
Europe
Americas.
While
such
fashionable
often
carry
no
biological
information
regarding
itself,
they
help
give
visibility
taxonomy,
discipline
currently
facing
profound
crisis
academia.
Taxonomy
among
unchanged
disciplines
across
last
centuries
terms
tools,
rules
writing
style.
Yet,
our
analysis
suggests
remain
living
time
space.
Ecological Indicators,
Journal Year:
2024,
Volume and Issue:
162, P. 112016 - 112016
Published: April 13, 2024
Population
monitoring
is
an
essential
component
of
biodiversity
conservation
and
management,
but
low
detection
probabilities
for
rare
and/or
cryptic
species
makes
estimating
abundance
occupancy
challenging.
Passive
acoustic
combined
with
machine
learning
algorithms
represents
a
potential
path
forward
to
effectively
efficiently
monitor
the
occurrence
vocalizing
across
entire
forest
landscapes.
Our
objectives
were
develop
implement
convolutional
neural
network
(PNW-Cnet)
identify
vocalizations
threatened
nesting
bird
–
marbled
murrelet
(Brachyramphus
marmoratus)
in
Pacific
Northwest,
U.S.A.,
2018–2021.
We
used
PNW-Cnet
predictions
from
broadscale
passive
data
examine
spatiotemporal
patterns
distribution
murrelets.
showed
sufficiently
high
prediction
accuracy
(overall
precision
>
0.9)
enable
population
monitoring.
Spatiotemporal
analysis
that
annual
peak
call
occurs
ordinal
weeks
28–32
(late
July–Mid
August)
this
varied
by
study
area.
The
greatest
number
detections
typically
occurred
Olympic
Peninsula
Oregon
Coast
Range
where
late-successional
dominates
nearer
ocean
habitats.
demonstrate
can
be
understand
intensity
use
broad
scales
addition
typical
detection/non-detection
are
often
collected.
offers
considerable
promise
modeling
long-term
species.
Frontiers in Ecology and Evolution,
Journal Year:
2022,
Volume and Issue:
10
Published: May 20, 2022
Ecological
communities
are
fundamentally
connected
through
a
network
of
trophic
interactions
that
often
complex
and
difficult
to
model.
Substantial
variation
exists
in
the
nature
magnitude
these
across
various
predators
prey
time.
However,
empirical
data
needed
characterize
relationships
obtain
natural
systems,
even
for
relatively
simple
food
webs.
Consequently,
prey-dependent
specifically
hyperbolic
form
(Holling’s
Type
II),
which
consumption
increases
with
density
but
ultimately
becomes
saturated
or
limited
by
time
spent
handling
prey,
most
widely
used
albeit
without
knowledge
their
appropriateness.
Here,
we
investigate
sensitivity
simplified
web
model
natural,
boreal
system
Kluane
region
Yukon,
Canada
type
functional
response
used.
Intensive
study
this
community
has
permitted
best-fit
be
determined,
comprise
linear
(type
I),
sigmoidal
III),
prey-
ratio-dependent
relationships,
inverse
where
kill
rates
alternate
driven
densities
focal
prey.
We
compare
node-
network-level
properties
interaction
strengths
estimated
using
responses
one
exclusively
responses.
show
alone
fail
capture
important
ecological
such
as
switching,
surplus
killing
caching,
predator
interference,
turn
affect
estimates
cumulative
rates,
vulnerability
generality
predators,
connectance.
Exclusive
use
also
affected
trends
observed
metrics
over
underestimated
annual
several
metrics,
is
given
typically
short
periods.
Our
findings
highlight
need
more
comprehensive
research
aimed
at
characterizing
when
modeling
predator-prey
structure
function,
work
toward
mechanistic
understanding
linking
dynamics
systems.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: Nov. 27, 2022
Abstract
The
study
of
functional
diversity
(FD)
provides
ways
to
understand
phenomena
as
complex
community
assembly
or
the
dynamics
biodiversity
change
under
multiple
pressures.
Different
frameworks
are
used
quantify
FD,
either
based
on
dissimilarity
matrices
(e.g.,
Rao
entropy,
dendrograms)
multidimensional
spaces
(e.g.
convex
hulls,
kernel-density
hypervolumes).
While
first
does
not
enable
measurement
FD
within
a
richness/divergence/regularity
framework,
results
in
distortion
space,
latter
allow
for
comparisons
with
phylogenetic
(PD)
measures
and
can
be
extremely
sensitive
outliers.
We
propose
use
neighbor-joining
trees
(NJ)
represent
way
that
combines
strengths
current
without
many
their
weaknesses.
Our
proposal
is
also
uniquely
suited
studies
compare
PD,
both
share
(NJ
others)
same
mathematical
principles.
test
ability
this
novel
framework
initial
distances
between
species
minimal
space
sensitivity
using
NJ
compared
conventional
dendrograms,
hypervolumes
simulated
empirical
datasets.
Using
we
demonstrate
it
possible
combine
much
flexibility
provided
by
simplicity
tree-based
representations.
Moreover,
method
directly
comparable
PD
measures,
enables
quantification
richness,
divergence
regularity
space.