bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Sept. 22, 2023
Abstract
The
tumour
microenvironment
(TME)
consists
of
tumour-supportive
immune
cells,
endothelial
and
fibroblasts.
PhenoCycler,
a
high-plex
single
cell
imaging
platform,
is
used
to
characterize
the
complexity
TME.
Here,
we
PhenoCycler
spatially
resolve
TME
8
routinely
employed
pre-clinical
models
lymphoma,
breast
cancer,
melanoma.
Our
data
reveal
distinct
TMEs
in
different
cancer
that
were
imaged,
show
cell-cell
contacts
differ
depending
on
type
examined.
For
instance,
found
infiltration
murine
model
melanoma
altered
cellular
organization
melanomas
become
resistant
αPD-1
therapy,
with
depletions
number
interactions.
Furthermore,
provide
detailed
pipelines
for
conjugation
antibodies
are
optimized
staining
FFPE
tissues
specifically,
alongside
open-source
analysis
procedures.
Overall,
this
valuable
resource
study
seamlessly
adaptable
any
field
research
involving
models.
European Journal of Cancer,
Journal Year:
2023,
Volume and Issue:
187, P. 7 - 14
Published: April 2, 2023
Dedifferentiated
melanoma
(DedM)
poses
significant
diagnostic
challenges.
We
aimed
to
investigate
the
clinical,
histopathological
and
molecular
features
of
DedM.
Methylation
signature
(MS)
copy
number
profiling
(CNP)
were
carried
out
in
a
subgroup
cases.A
retrospective
series
78
DedM
tissue
samples
from
61
patients
retrieved
EORTC
(European
Organisation
for
Research
Treatment
Cancer)
Melanoma
Group
centres
centrally
reviewed.
Clinical
retrieved.
In
patients,
genotyping
through
Infinium
microarray
CNP
analysis
was
out.Most
(60/61)
had
metastatic
showing
most
frequently
an
unclassified
pleomorphic,
spindle
cell,
or
small
round
cell
morphology
akin
undifferentiated
soft
sarcoma,
rarely
associated
with
heterologous
elements.
Overall,
among
20
successfully
analysed
16
we
found
retained
melanoma-like
MS
only
7
while
non-melanoma-like
observed
13
samples.
two
whom
multiple
specimens
analysed,
some
preserved
cutaneous
other
exhibited
epigenetic
shift
towards
mesenchymal/sarcoma-like
profile,
matching
histological
features.
these
largely
identical
across
all
specimens,
line
their
common
clonal
origin,
despite
modification
epigenome.Our
study
further
highlights
that
represents
real
challenge.
While
genomic
may
help
pathologists
diagnose
DedM,
provide
proof-of-concept
dedifferentiation
is
modifications.
Veterinary and Comparative Oncology,
Journal Year:
2024,
Volume and Issue:
unknown
Published: Oct. 17, 2024
Canine
mucosal
melanoma
(CMM)
is
the
most
common
oral
malignancy
in
dogs
and
significantly
more
aggressive
than
its
cutaneous
counterpart
(CCM),
yet
reasons
for
this
disparity
remain
unclear.
Cancer-associated
stroma
(CAS)
plays
a
crucial
role
tumour
progression,
but
detailed
understanding
of
CAS
canine
missing.
To
assess
stromal
reprogramming,
we
analysed
from
21
CMM,
14
CCM
normal
10
skin
9
mucosa
samples
by
laser-capture
microdissection
followed
RNA
sequencing.
Results
were
assessed
relation
to
subtypes,
prognostic
factors
including
mitotic
count
(MC),
ulceration,
necrosis,
pigmentation
immune
cell
infiltration
(CD3,
CD20
CD68),
scored
using
immunohistochemistry
situ
hybridisation.
Stromal
reprogramming
was
evident
both
subtypes
pronounced
CMM.
Immune-excluded
tumours
exhibited
higher
MC
desert/cold
ones.
strongly
correlated
with
genes
associated
B-cells,
T-helper
cells
CTLA4
CCM,
suggesting
depend
on
malignancy.
Finally,
identify
an
immune-suppressive
signature
subset
CMM
characterised
downregulation
key
checkpoints
pathways.
Together,
these
findings
provide
solid
foundation
melanoma,
specific
subtypes.
International Journal of Molecular Sciences,
Journal Year:
2023,
Volume and Issue:
24(24), P. 17282 - 17282
Published: Dec. 8, 2023
Immune
checkpoint
inhibitors
(ICIs),
including
anti-cytotoxic
T-lymphocyte-associated
protein
4
(CTLA-4)
and
anti-programmed
death-1
(PD-1)
antibodies,
have
initiated
a
new
era
in
the
treatment
of
malignant
melanoma.
ICIs
can
be
used
various
settings,
first-line,
adjuvant,
neo-adjuvant
therapy.
In
scope
this
review,
we
examined
clinical
studies
utilizing
context
treating
oral
mucosal
melanoma,
rare
disease,
albeit
with
an
extremely
poor
prognosis,
specific
focus
on
unraveling
intricate
web
resistance
mechanisms.
The
absence
comprehensive
review
focusing
melanoma
is
notable.
Therefore,
seeks
to
address
deficiency
by
offering
novel
thorough
analysis
current
status,
potential
mechanisms,
future
prospects
applying
specifically
Clarifying
thoroughly
understanding
these
mechanisms
will
facilitate
advancement
effective
therapeutic
approaches
enhance
for
patients
suffering
from
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Aug. 27, 2024
Abstract
Extracellular
matrix
(ECM)
stiffening,
resulting
from
increased
collagen
deposition
and
cross-linking,
is
a
key
biophysical
factor
of
the
tumor
microenvironment.
Cutaneous
melanoma
deadly
metastatic
cancer.
Its
aggressiveness
stems
high
intratumoral
heterogeneity,
plasticity
cells,
which
transit
melanocytic
state
to
dedifferentiated
therapy-resistant
invasive
phenotypes,
characterized
by
mesenchymal
and/or
neural
crest
stem
cell-like
features.
Phenotypic
regulated
stroma-derived
soluble
factors,
but
functional
impact
ECM
stiffening
on
cell
phenotypes
remains
ill
defined.
Here,
we
found
that
subpopulations
display
difference
in
mechanical
responsiveness.
Compared
cells
showed
proliferation,
migration
resistance
MAP
kinase-targeted
therapy
when
seeded
stiff
collagen.
By
contrast,
soft
impaired
their
proliferation
sensitized
them
targeted
therapy.
In
addition,
extracellular
signals
are
required
sustain
identity
dedifferentiation
Further
analyses
indicated
mechanosensitivity
nature
relies
expression
activation
receptors
DDR1
DDR2
control
actomyosin
cytoskeleton
reorganization
YAP
mechanotransduction
pathway.
Inhibiting
both
DDR
abrogated
mechano-induced
behavior
drug-resistant
phenotype,
while
forcing
induced
responsiveness
less
differentiated
phenotype.
Our
results
reveal
phenotypic
reprogramming
endows
with
sensitivity
addiction
stiffness.
We
propose
mechano-addiction
mediated
may
represent
novel
vulnerability
for
aggressive
cancer
can
be
exploited
therapeutic
benefits.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Dec. 16, 2024
ABSTRACT
The
immune
tumor
microenvironment
(TME)
is
increasingly
recognized
as
a
dynamic
ecosystem
where
B
cells
play
pivotal
roles
in
modulating
therapeutic
responses,
particularly
the
context
of
checkpoint
blockade
(ICB)
therapy.
While
have
traditionally
been
viewed
bystanders
immunity,
recent
evidence
suggests
they
may
actively
influence
anti-tumor
albeit
with
conflicting
reports
regarding
their
pro-tumor
or
roles.
This
study
explores
crucial
played
by
and
secreted
extracellular
vesicles
(EVs)
shaping
melanoma
responses
to
ICB
We
show
significant
enrichment
therapy
responders
compared
non-responders,
pre-treatment,
through
retrospective
analyses
patient
tumors.
Functional
assays
demonstrate
that
cell
depletion
impairs
T
cell-mediated
cytotoxicity,
underscoring
importance
responses.
To
investigate
clinical
relevance,
EVs
were
isolated
from
tumors,
fractioned
into
subpopulations.
MiRNA
profiling
CD19+
identifies
miR-99a-5p
top
candidate,
among
several
others,
upregulated
responders.
silencing
diminishes
activity,
suggesting
its
role
promoting
Mechanistically,
influences
maturation
within
TME
mediating
class-switch
recombination.
Our
findings
highlight
important
derived
efficacy
immunotherapy,
paving
way
for
novel
strategies
targeting
cell-related
pathways.
Graphical
abstract
(created
Biorender)
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Jan. 10, 2023
Phenotypic
heterogeneity
of
melanoma
cells
contributes
to
drug
tolerance,
increased
metastasis,
and
immune
evasion
in
patients
with
progressive
disease.
Diverse
mechanisms
have
been
individually
reported
shape
extensive
intra-
inter-tumoral
phenotypic
heterogeneity,
such
as
IFNγ
signaling
proliferative
invasive
transition,
but
how
their
crosstalk
impacts
tumor
progression
remains
largely
elusive.
Here,
we
integrate
dynamical
systems
modeling
transcriptomic
data
analysis
at
bulk
single-cell
levels
investigate
underlying
behind
its
impact
on
adaptation
targeted
therapy
checkpoint
inhibitors.
We
construct
a
minimal
core
regulatory
network
involving
transcription
factors
implicated
this
process
identify
the
multiple
"attractors"
landscape
enabled
by
network.
Our
model
predictions
about
synergistic
control
PD-L1
transition
were
validated
experimentally
three
cell
lines
-
MALME3,
SK-MEL-5
A375.
demonstrate
that
emergent
dynamics
our
comprising
MITF,
SOX10,
SOX9,
JUN
ZEB1
can
recapitulate
experimental
observations
co-existence
diverse
phenotypes
(proliferative,
neural
crest-like,
invasive)
reversible
cell-state
transitions
among
them,
including
response
These
varied
PD-L1,
driving
immune-suppression.
This
be
aggravated
combinatorial
these
regulators
signaling.
changes
evade
inhibitors
sets
from
vitro
vivo
experiments.
calibrated
offers
platform
test
therapies
provide
rational
avenues
for
treatment
metastatic
melanoma.
improved
understanding
expression,
leveraged
improve
clinical
management
therapy-resistant
Experimental Dermatology,
Journal Year:
2023,
Volume and Issue:
33(1)
Published: Sept. 29, 2023
Abstract
Melanoma
is
a
melanocyte‐derived
malignant
cancer
and
known
for
its
early
metastasis
high
mortality
rates.
It
highly
cutaneous
tumour
disease
that
could
be
related
to
the
abnormal
immune
microenvironment,
identification
of
reliable
diagnostic
prognostic
markers
crucial
improving
patient
outcomes.
In
search
biomarkers,
various
types
RNAs
have
been
discovered
recognized
as
markers.
Among
these,
small
nucleolar
(snoRNAs)
emerged
promising
avenue
studying
diagnosis
in
tumours
due
their
widespread
presence
tissues,
specificity
stability.
our
study,
we
analysed
snoRNAs
data
from
melanoma
samples
TCGA‐SKCM
cohort
developed
model
comprising
12
(SNORD9,
SNORA31,
SNORD14E,
SNORA14A,
SNORA5A,
SNORD83A,
SNORA75,
AL096855,
AC007684,
SNORD14A,
SNORA65
AC004839).
This
exhibited
unique
accuracy
demonstrated
significant
correlation
with
infiltration
microenvironment.
Additionally,
analysis
GSE213145
dataset,
which
explored
sensitivity
resistance
checkpoint
inhibitors,
further
supported
potential
immunotherapy.
Overall,
study
contributes
immune‐related
biomarkers
patients.
These
findings
can
offer
valuable
insights
future
discovery
novel
treatment
strategies
hold
promise
clinical
outcomes
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Sept. 22, 2023
Abstract
The
tumour
microenvironment
(TME)
consists
of
tumour-supportive
immune
cells,
endothelial
and
fibroblasts.
PhenoCycler,
a
high-plex
single
cell
imaging
platform,
is
used
to
characterize
the
complexity
TME.
Here,
we
PhenoCycler
spatially
resolve
TME
8
routinely
employed
pre-clinical
models
lymphoma,
breast
cancer,
melanoma.
Our
data
reveal
distinct
TMEs
in
different
cancer
that
were
imaged,
show
cell-cell
contacts
differ
depending
on
type
examined.
For
instance,
found
infiltration
murine
model
melanoma
altered
cellular
organization
melanomas
become
resistant
αPD-1
therapy,
with
depletions
number
interactions.
Furthermore,
provide
detailed
pipelines
for
conjugation
antibodies
are
optimized
staining
FFPE
tissues
specifically,
alongside
open-source
analysis
procedures.
Overall,
this
valuable
resource
study
seamlessly
adaptable
any
field
research
involving
models.