Key Insights into Respiratory Virus Testing: Sensitivity and Clinical Implications
Julio García‐Rodríguez,
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Frédéric Janvier,
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Clemens Kill
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et al.
Microorganisms,
Journal Year:
2025,
Volume and Issue:
13(1), P. 63 - 63
Published: Jan. 2, 2025
Acute
respiratory
infections
are
a
significant
challenge
in
primary
care
and
hospital
settings.
Viruses
the
most
common
etiology
overlapping
symptomatology
among
major
viruses,
such
as
influenza,
severe
acute
syndrome
coronavirus
2,
syncytial
virus,
requires
use
of
diagnostic
tests
that
deliver
early
accurate
results.
With
increasing
availability
rapid
antigen
(RATS),
it
is
tempting
to
prefer
them
over
polymerase
chain
reaction
(PCR)
tests.
However,
compelling
arguments
support
existing
recommendations
some
European
countries
maintain
PCR
testing
for
patient
management
throughout
year.
RATs
show
sensitivities
below
30%
with
lower
viral
loads,
which
can
have
clinical
implications.
perform
well
at
cycle
threshold
(Ct)
values,
sensitivity
reaching
97.9%
Ct
values
20,
drops
significantly
above
25.
Factors
affecting
load
include
disease
stage,
vaccination
status,
variants,
all
compromise
accuracy
Multi-target
effectively
overcome
these
issues,
ensuring
reliable
diagnosis.
Additionally,
detection
paucisymptomatic
cases
essential
settings
facilitate
isolation
prevent
secondary
infections.
Economic
analyses
comprehensive
tests,
triplex-type
detecting
SARS-CoV-2,
influenza
RSV,
first-line
approach,
they
reduce
case
numbers
healthcare
resource
utilization.
Maintaining
year-round
therefore
crucial
effective
Language: Английский
S6P mutation in Delta and Omicron variant spike protein significantly enhances the efficacy of mRNA COVID-19 vaccines
Yong‐Sik Bong,
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David Alan Brown,
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Ezra Chung
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et al.
Frontiers in Immunology,
Journal Year:
2025,
Volume and Issue:
15
Published: Jan. 3, 2025
The
unrelenting
emergence
of
SARS-CoV-2
variants
has
significantly
challenged
the
efficacy
existing
COVID-19
vaccines.
Enhancing
stability
and
immunogenicity
spike
protein
is
critical
for
improving
vaccine
performance
addressing
variant-driven
immune
evasion.
We
developed
an
mRNA-based
vaccine,
RV-1730,
encoding
Delta
variant
with
S6P
mutation
to
enhance
immunogenicity.
vaccine's
protective
were
evaluated
in
preclinical
models,
including
monovalent
(RV-1730)
bivalent
(RV-1731)
formulations
targeting
BA.1
variants.
Additionally,
effectiveness
RV-1730
as
a
heterologous
booster
following
primary
vaccination
BNT162b2
(Pfizer-BioNTech)
mRNA-1273
(Moderna-NIAID)
was
assessed.
elicited
stronger
B
T
cell
responses
more
durable
neutralizing
antibodies
compared
S2P-based
RV-1731
demonstrated
broad
activity
against
emerging
variants,
XBB1.5
JN.1.
Importantly,
when
used
initial
immunization
or
mRNA-1273,
enhanced
antibody
titers
multiple
Omicron.
Both
provided
superior
protection
indicating
due
mutation.
incorporation
into
enhances
strong
broad-spectrum
underscore
their
potential
versatile
effective
strategies
its
evolving
Language: Английский
Genomic Epidemiology of the Main SARS‐CoV‐2 Variants Circulating in Italy During the Omicron Era
Annalisa Bergna,
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Alessia Lai,
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Fabio Sagradi
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et al.
Journal of Medical Virology,
Journal Year:
2025,
Volume and Issue:
97(2)
Published: Feb. 1, 2025
ABSTRACT
Since
early
2022
the
Omicron
variant
has
rapidly
spread
worldwide,
becoming
dominant
to
date.
The
study
aimed
investigate
clinical
and
epidemiological
characteristics
of
COVID‐19
patients
reconstruct
genomic
epidemiology
main
SARS‐CoV‐2
sublineages
in
Italy
2022.
A
total
8970
samples
were
studied,
phylogenetic
analyses
focused
on
BA.1,
BA.2,
BA.5
subvariants.
More
than
half
subjects
received
three
doses
vaccine
experienced
a
reinfection.
significant
larger
proportion
unvaccinated
presented
reinfection
compared
with
vaccinated.
Clusters
tMRCA
between
September–November
2021
(BA.1),
November
2021–January
(BA.2),
October
2021–May
(BA.5).
R
e
values
showed
highest
level
September–October,
January–February
2022,
May
for
BA.2
BA.5,
respectively.
Limited
number
studied
sequences
are
included
clusters.
rate
exceeded
its
evolutionary
rate.
No
single
sublineage
had
sufficient
time
differentiate
into
large
clusters,
but
only
small
fragmented
groups
sharing
same
recent
ancestor.
These
dissect
dynamics
over
period
great
changes
epidemic.
Language: Английский
4D-DIA Proteomics Uncovers New Insights into Host Salivary Response Following SARS-CoV-2 Omicron Infection
Journal of Proteome Research,
Journal Year:
2025,
Volume and Issue:
24(2), P. 499 - 514
Published: Jan. 13, 2025
Since
late
2021,
Omicron
variants
have
dominated
the
epidemiological
scenario
as
most
successful
severe
acute
respiratory
syndrome
coronavirus
2
(SARS-CoV-2)
sublineages,
driving
new
and
breakthrough
infections
globally
over
past
two
years.
In
this
study,
we
investigated
for
first
time
host
salivary
response
of
COVID-19
patients
infected
with
(BA.1,
BA.2,
BA.4/5)
by
using
an
untargeted
four-dimensional
data-independent
acquisition
(4D-DIA)-based
proteomics
approach.
We
identified
137
proteins
whose
abundance
levels
differed
between
positive
negative
groups.
Salivary
signatures
were
mainly
enriched
in
ribosomal
proteins,
linked
to
mRNAviral
translation,
protein
synthesis
processing,
immune
innate,
antiapoptotic
signaling.
The
higher
14-3-3
(YWHAG,
YWHAQ,
YWHAE,
SFN)
saliva,
reported
here,
may
be
associated
increased
infectivity
improved
viral
replicative
fitness.
also
seven
(ACTN1,
H2AC2,
GSN,
NDKA,
CD109,
GGH,
PCYOX)
that
yielded
comprehension
into
infection
performed
outstandingly
screening
a
hospital
setting.
This
panel
presented
enhanced
anti-COVID-19
anti-inflammatory
signature,
providing
insights
disease
severity,
supported
comparisons
other
proteome
data
sets.
signature
provided
valuable
host's
SARS-CoV-2
infection,
shedding
light
on
pathophysiology
COVID-19,
particularly
cases
mild
disease.
It
underscores
potential
clinical
applications
saliva
settings.
Data
are
available
via
ProteomeXchange
identifier
PXD054133.
Language: Английский
Fusion protein-based COVID-19 vaccines exemplified by a chimeric vaccine based on a single fusion protein (W-PreS-O)
Frontiers in Immunology,
Journal Year:
2025,
Volume and Issue:
16
Published: Jan. 28, 2025
In
this
article
we
discuss
characteristics
of
fusion
protein-based
SARS-CoV-2
vaccines.
We
focus
on
recombinant
vaccine
antigens
comprising
proteins
consisting
combinations
SARS-CoV-2-derived
or
peptides
antigens/peptides
with
SARS-CoV-2-unrelated
proteins/peptides.
These
are
made
to
increase
the
immunogenicity
and/or
enable
special
targeting
immune
system.
The
approach
is
exemplified
solely
in
a
proof
concept
study
by
using
W-PreS-O,
chimeric
based
single
protein
(W-PreS-O),
combining
RBDs
from
Wuhan
hu-1
wild-type
and
Omicron
BA.1
hepatitis
B
virus
(HBV)-derived
PreS
surface
antigen
adsorbed
aluminum
hydroxide.
W-PreS-O
was
evaluated
Syrian
hamsters
which
were
immunized
three
times
at
three-week
intervals
hydroxide
(placebo)
before
they
infected
BA.1.
Neutralizing
antibody
(nAB)
titers,
weight,
lung
symptoms,
viral
loads,
as
measured
RT-PCR
upper
lower
respiratory
tracts,
determined.
addition,
infectious
titers
lungs
plaque-forming
assay.
found
that
W-PreS-O-vaccinated
developed
robust
nABs
against
BA.1,
showed
almost
no
development
pneumonia,
had
significantly
reduced
lungs.
Importantly,
loads
nasal
cavities
close
above
PCR
cycle
threshold
considered
be
non-infectious.
data
our
proof-of-concept
provides
compelling
evidence
has
protective
effect
hamster
vivo
infection
model
thus
support
promising
results
obtained
also
for
other
Language: Английский
The Inhibiting Effect of GB-2, (+)-Catechin, Theaflavin, and Theaflavin 3-Gallate on Interaction between ACE2 and SARS-CoV-2 EG.5.1 and HV.1 Variants
Chung‐Kuang Lu,
No information about this author
Jrhau Lung,
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Li‐Hsin Shu
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et al.
International Journal of Molecular Sciences,
Journal Year:
2024,
Volume and Issue:
25(17), P. 9498 - 9498
Published: Aug. 31, 2024
The
ongoing
COVID-19
pandemic,
caused
by
SARS-CoV-2,
continues
to
pose
significant
global
health
challenges.
results
demonstrated
that
GB-2
at
200
μg/mL
effectively
increased
the
population
of
293T-ACE2
cells
with
low
RBD
binding
for
both
SARS-CoV-2
Omicron
EG.5.1
and
HV.1
variants
dual-color
flow
cytometry,
indicating
its
ability
inhibit
virus
attachment.
Further
investigation
revealed
(+)-catechin
25
50
did
not
significantly
alter
ACE2-RBD
interaction
variant.
In
contrast,
theaflavin
showed
inhibitory
effects
EG.5.1,
while
only
higher
concentration
was
effective
HV.1.
Notably,
3-gallate
exhibited
a
potent
inhibition
concentrations
tested.
Molecular
docking
studies
provided
insight
into
mechanisms
variants.
Both
compounds
favorable
scores,
demonstrating
slightly
lower
scores
(-8
kcal/mol)
compared
(-7
These
suggest
stable
interactions
between
key
residues
in
RBD,
potentially
explaining
their
on
conclusion,
GB-2,
theaflavin,
demonstrate
potential
as
inhibitors
variants,
highlighting
therapeutic
promise
against
COVID-19.
However,
these
findings
are
primarily
based
computational
vitro
studies,
necessitating
further
vivo
research
clinical
trials
confirm
efficacy
safety
humans.
Language: Английский
Assessment of environmental factors influencing SARS-CoV-2 in Vietnam's surface water across two years of clinical data
Yadpiroon Siri,
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Bikash Malla,
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Le Thanh Thao
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et al.
The Science of The Total Environment,
Journal Year:
2024,
Volume and Issue:
957, P. 177449 - 177449
Published: Nov. 19, 2024
Wastewater-based
epidemiology
(WBE)
is
an
effective,
non-invasive
method
for
monitoring
the
spread
of
severe
acute
respiratory
syndrome
coronavirus
2
(SARS-CoV-2)
by
tracking
viral
prevalence
in
water.
This
study
aimed
to
investigate
presence
SARS-CoV-2
surface
water
Vietnam
over
two
years.
One-step
quantitative
reverse
transcription
polymerase
chain
reaction
(qRT-PCR)
assays
were
employed
quantify
and
its
variant-specific
mutation
sites
(G339D/E484A)
pepper
mild
mottle
virus
(PMMoV)
from
a
total
315
samples
(105
per
type)
compare
with
reported
Coronavirus
disease
2019
(COVID-19)
cases
environmental
factors.
was
detected
38
%
(40/105),
43
(45/105),
39
(41/105)
Sites
A,
B,
C,
respectively,
concentrations
3.0-5.6
log
Language: Английский
Design, synthesis, and biological activity evaluation of dihydromyricetin derivatives against SARS-CoV-2-Omicron virus
Cong Wu,
No information about this author
Qi Jiang,
No information about this author
Hui Zhong
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et al.
Journal of Enzyme Inhibition and Medicinal Chemistry,
Journal Year:
2024,
Volume and Issue:
39(1)
Published: Aug. 29, 2024
An
oxidising
and
substituting
one-pot
reaction
strategy
has
been
developed
to
synthesise
dihydromyricetin
derivatives
with
the
aim
of
enhancing
inhibitory
activity
against
SARS-CoV-2.
Different
Language: Английский