The ISME Journal,
Journal Year:
2020,
Volume and Issue:
14(6), P. 1435 - 1450
Published: March 2, 2020
Abstract
Microbially
mediated
processes
contribute
to
coral
reef
resilience
yet,
despite
extensive
characterisation
of
microbial
community
variation
following
environmental
perturbation,
the
effect
on
microbiome
function
is
poorly
understood.
We
undertook
metagenomic
sequencing
sponge,
macroalgae
and
seawater
microbiomes
from
a
macroalgae-dominated
inshore
define
their
functional
potential
evaluate
seasonal
shifts
in
microbially
processes.
In
total,
125
high-quality
metagenome-assembled
genomes
were
reconstructed,
spanning
15
bacterial
3
archaeal
phyla.
Multivariate
analysis
relative
abundance
revealed
changes
relation
fluctuations
(e.g.
biomass,
temperature).
For
example,
shift
Alphaproteobacteria
Bacteroidota-dominated
occurred
during
summer,
resulting
an
increased
genomic
degrade
macroalgal-derived
polysaccharides.
An
85%
reduction
Chloroflexota
was
observed
sponge
with
consequences
for
nutrition,
waste
product
removal,
detoxification
holobiont.
A
Firmicutes:Bacteroidota
ratio
detected
over
summer
implications
polysaccharide
degradation
macroalgal
microbiomes.
These
results
highlight
that
dominant
taxa
alter
repertoire
host-associated
microbiomes,
how
perturbation
can
affect
ecosystems.
Frontiers in Marine Science,
Journal Year:
2018,
Volume and Issue:
5
Published: March 28, 2018
Nutrient
pollution
can
increase
the
prevalence
and
severity
of
coral
disease
bleaching
in
ambient
temperature
conditions
or
during
experimental
thermal
challenge.
However,
there
have
been
few
opportunities
to
study
effects
nutrient
natural
anomalies.
Here
we
present
results
from
an
experiment
conducted
2014
event
Florida
Keys,
USA,
that
exposed
Agaricia
sp.
(Undaria)
Siderastrea
siderea
corals
3
types
elevated
nutrients:
nitrogen
alone,
phosphorous
combination
phosphorus.
Overall,
was
high
regardless
treatment,
but
enrichment
alone
both
prolonged
increased
mortality
corals.
At
same
time,
temperatures
Dark
Spot
Syndrome
(DSS),
a
typically
associated
with
cold
exposure
did
not
disease,
suggesting
stress
overwhelms
on
this
such
extreme
event.
Analysis
85
microbial
metagenomes
also
showed
correlated
significant
shifts
composition
function
microbiomes,
DSS
had
microbiomes
distinct
apparently
healthy
In
particular,
identified
viral,
archaeal,
fungal
families.
These
were
likely
driven
by
other
environmental
co-variates
occurring
no
taxa
signs
DSS.
Furthermore,
although
affect
alpha
diversity,
it
significantly
microbiome
beta-diversity,
effect
independent
time.
suggest
strong
anomalies
local
interact
act
independently
alter
health
variety
ways,
ultimately
contribute
bleaching,
reefs
Keys.
Ecology and Evolution,
Journal Year:
2019,
Volume and Issue:
9(3), P. 938 - 956
Published: Jan. 17, 2019
Repeat
marine
heat
wave-induced
mass
coral
bleaching
has
decimated
reefs
in
Seychelles
for
35
years,
but
how
coral-associated
microbial
diversity
(microalgal
endosymbionts
of
the
family
Symbiodiniaceae
and
bacterial
communities)
potentially
underpins
broad-scale
dynamics
remains
unknown.
We
assessed
microbiome
composition
during
2016
wave
peak
at
two
contrasting
reef
sites
(clear
vs.
turbid)
Seychelles,
key
species
considered
sensitive
(Acropora
muricata,
Acropora
gemmifera)
or
tolerant
(Porites
lutea,
Coelastrea
aspera).
For
all
sites,
we
sampled
bleached
versus
unbleached
colonies
to
examine
microbiomes
align
with
stress
susceptibility.
Over
30%
corals
2016,
half
which
were
from
sp.
Pocillopora
that
largely
transitioned
mortality
by
2017.
ITS2-sequencing
revealed
P.
lutea
generally
associated
C3z/C3
C15
types,
respectively,
whereas
C.
aspera
exhibited
a
plastic
association
multiple
D
types
C3z
types.
16S
rRNA
gene
sequencing
communities
host-specific,
through
differences
most
abundant
families,
Hahellaceae
(comprising
Endozoicomonas),
Rhodospirillaceae,
Rhodobacteraceae.
Both
lower
diversity,
richness,
community
evenness
compared
more
bleaching-resistant
aspera.
Different
susceptibility
among
was
thus
consistent
distinct
profiles.
These
profiles
conserved
across
species.
As
this
pattern
could
also
reflect
parallel
response
environmental
changes,
detailed
functional
associations
will
need
be
determined
future
studies.
Further
understanding
such
microbiome-environmental
interactions
is
likely
critical
target
effective
management
within
oceanically
isolated
Seychelles.
Environmental Microbiology,
Journal Year:
2017,
Volume and Issue:
20(2), P. 431 - 449
Published: Oct. 13, 2017
Rapidly
changing
climate
regimes
combined
with
other
anthropogenic
pressures
are
implicated
in
increased
disease
epizootics
among
reef
building
corals,
resulting
habitat
structure.
These
accumulated
stressors
directly
contribute
to
outbreaks
by
compromising
the
coral
host
immune
system,
modulating
virulence
of
microbial
pathogens
and/or
disrupting
balance
within
microbiome
holobiont.
Disentangling
causation
has
been
challenging,
and
while
progress
made
for
certain
diseases
terms
roles
associated
microorganisms
play,
it
is
evident
that
like
marine
or
terrestrial
systems,
compromised
health
cannot
always
be
attributed
a
single
causative
agent.
Here,
we
summarize
current
state
knowledge
induced
diseases,
discuss
challenges
strategies
further
disentangle
causation.
With
major
environmental
reefs
face
over
next
century,
understanding
interactions
between
host,
agent(s)
lead
disease,
still
priority
enable
development
effective
resilience
into
populations.
The ISME Journal,
Journal Year:
2020,
Volume and Issue:
14(6), P. 1435 - 1450
Published: March 2, 2020
Abstract
Microbially
mediated
processes
contribute
to
coral
reef
resilience
yet,
despite
extensive
characterisation
of
microbial
community
variation
following
environmental
perturbation,
the
effect
on
microbiome
function
is
poorly
understood.
We
undertook
metagenomic
sequencing
sponge,
macroalgae
and
seawater
microbiomes
from
a
macroalgae-dominated
inshore
define
their
functional
potential
evaluate
seasonal
shifts
in
microbially
processes.
In
total,
125
high-quality
metagenome-assembled
genomes
were
reconstructed,
spanning
15
bacterial
3
archaeal
phyla.
Multivariate
analysis
relative
abundance
revealed
changes
relation
fluctuations
(e.g.
biomass,
temperature).
For
example,
shift
Alphaproteobacteria
Bacteroidota-dominated
occurred
during
summer,
resulting
an
increased
genomic
degrade
macroalgal-derived
polysaccharides.
An
85%
reduction
Chloroflexota
was
observed
sponge
with
consequences
for
nutrition,
waste
product
removal,
detoxification
holobiont.
A
Firmicutes:Bacteroidota
ratio
detected
over
summer
implications
polysaccharide
degradation
macroalgal
microbiomes.
These
results
highlight
that
dominant
taxa
alter
repertoire
host-associated
microbiomes,
how
perturbation
can
affect
ecosystems.