MicrobiologyOpen,
Journal Year:
2023,
Volume and Issue:
12(3)
Published: April 27, 2023
Sponges
perform
important
ecosystem
functions,
host
diverse
microbial
symbiont
communities
(microbiomes),
and
have
been
increasing
in
density
on
Caribbean
coral
reefs
over
the
last
decade.
compete
for
space
reef
through
both
morphological
allelopathic
strategies,
but
no
studies
of
microbiome
impacts
during
these
interactions
conducted.
Microbiome
alterations
mediate
spatial
competition
other
invertebrates
may
similarly
impact
competitive
outcomes
sponges.
In
this
study,
we
characterized
microbiomes
three
common
sponges
(Agelas
tubulata,
Iotrochota
birotulata,
Xestospongia
muta)
observed
to
naturally
interact
spatially
Key
Largo,
Florida
(USA).
For
each
species,
replicate
samples
were
collected
from
contact
with
neighbors
at
site
(contact)
distant
(no
contact),
isolated
(control).
Next-generation
amplicon
sequencing
(V4
region
16S
rRNA)
revealed
significant
differences
community
structure
diversity
among
sponge
effects
within
species
across
all
states
competitor
pairings,
indicating
large
shifts
response
direct
contact.
At
a
finer
scale,
particular
taxa
(operational
taxonomic
units
97%
sequence
identity,
OTUs)
shown
decrease
significantly
some
interaction
suggesting
localized
specific
competitors.
Overall,
results
that
does
not
alter
composition
or
interacting
sponges,
are
mediated
by
damage
destabilization.
PeerJ,
Journal Year:
2024,
Volume and Issue:
12, P. e18607 - e18607
Published: Nov. 26, 2024
The
distributions
of
anthozoan
corals
are
undercharacterized
due
to
their
wide
bathymetric
ranges,
occurrences
in
remote
locales,
and
difficulties
identification
from
morphology
alone.
Environmental
DNA
(eDNA)
sequencing
promises
be
a
noninvasive
strategy
complement
conventional
approaches
for
mapping
monitoring
the
distribution
biodiversity
coral
communities.
Primers
eDNA
metabarcoding
have
been
designed
amplify
nuclear
mitochondrial
barcodes
shallow
scleractinians
MutS
deep-sea
octocorals.
However,
comprehensive
method
all
corals,
including
black
has
not
developed.
We
leveraged
sequence
database
global
collections,
water
deep
sea,
design
new
PCR
primers
that
target
28S
rRNA
gene
(
rDNA
).
tested
performance
these
by
amplifying
samples
collected
Gulf
Mexico
near
mesophotic
were
also
imaged,
sampled,
sequenced.
Sequencing
libraries
produced
using
highly
enriched
octocorals,
scleractinians,
with
up
99.9%
reads
originating
corals.
Further,
barcode
amplified
distinguished
genera
species
many
cases,
like
previously
developed
methods
only
octocorals
or
scleractinians.
recovered
amplicon
variants
(ASVs)
identical
derived
Sanger
genome
skimming
sampled
at
same
field
sites.
This
permits
targeted
sites
where
they
co-occur
expands
our
current
toolkit
communities
reefs
sea.
Scientific Data,
Journal Year:
2025,
Volume and Issue:
12(1)
Published: Jan. 15, 2025
Abstract
Trait-based
approaches
are
revolutionizing
our
understanding
of
high-diversity
ecosystems
by
providing
insights
into
the
principles
underlying
key
ecological
processes,
such
as
community
assembly,
species
distribution,
resilience,
and
relationship
between
biodiversity
ecosystem
functioning.
In
2016,
Coral
Trait
Database
advanced
coral
reef
science
centralizing
trait
information
for
stony
corals
(i.e.,
Subphylum
Anthozoa,
Class
Hexacorallia,
Order
Scleractinia).
However,
absence
data
soft
corals,
gorgonians,
sea
pens
Octocorallia)
limits
where
these
organisms
significant
members
play
pivotal
roles.
To
address
this
gap,
we
introduce
Octocoral
Database,
a
global,
open-source
database
curated
octocorals.
This
houses
species-
individual-level
data,
complemented
contextual
that
provides
relevant
framework
analyses.
The
inaugural
dataset,
OctocoralTraits
v2.2,
contains
over
97,500
global
observations
across
98
traits
3,500
species.
aims
to
evolve
steadily
growing,
community-led
resource
advances
future
marine
science,
with
particular
emphasis
on
research.
Frontiers in Marine Science,
Journal Year:
2024,
Volume and Issue:
11
Published: Jan. 29, 2024
Cold-Water
Corals
play
a
paramount
role
in
marine
benthic
ecosystems,
increasing
their
complexity
and
providing
spawning
nursery
habitats
to
many
species.
However,
due
sessile
lifestyle
ramified
shape
they
are
commonly
entangled
nets
even
by-caught
during
the
practice
of
bottom-contact
fishing,
which
includes
impacts
from
both
large-scale
activities
such
as
trawling
small-scale
fishing
(e.g.,
trammel
or
pots).
In
this
context,
passive
active
restoration
measures
crucial
avoid
damage
disappearance,
might
cause
consequent
loss
biodiversity
communities.
With
aim
modifying
these
practices
Marine
Protected
Area
Cap
de
Creus
(North-Western
Mediterranean),
fishers
scientists
(marine
biologists)
started
Participatory
Process
agreed
develop
joint
conservation
program
combining
two
distinct
projects:
project
incidentally
captured
on
for
subsequent
reintroduction
at
sea
(RESCAP
project)
also
mitigation
communities
(MITICAP
project).
Collaborative
actions
were
carried
out
including
interviews
exchanges
information
with
purpose
collecting
all
knowledge
required
conducting
projects.
This
study
shows
results
assessment
throughout
five
years
(2017-2022)
cooperative
work
highlights
how
it
is
long-term
revisable
ocean
literacy
strategies
ensuring
sustainable
governance.
An
test
evaluated
scientific
end
projects
revealed
that
despite
efforts
applied,
still
more
needed,
reinforces
importance
improving
transfer
MPA
management.
Under
coordination
social
anthropologists,
Cultural
Consensus
Analysis
was
conducted
fishers.
Results
protoculture
should
be
characterized
considered
when
developing
management
area.
Additionally,
Personal
Network
showed
have
become
agents
change
transmitted
learnings
communities,
nearby
guilds,
local
educational
centers
press.
Furthermore,
list
recommendations
provided
optimize
multisector
opportunities
emerging
collaborative
MPAs.
Frontiers in Marine Science,
Journal Year:
2024,
Volume and Issue:
11
Published: April 30, 2024
Accumulating
data
on
the
increasing
degradation
of
coral
reefs
worldwide
has
led
to
a
focus
unique
mesophotic
ecosystem
(MCE)
as
potential
refuge
for
threatened
shallow-water
species
(i.e.,
deep
reef
refugia
hypothesis:
DRRH).
Sponges
play
crucial
role
in
coral-reef
functioning
but
are
often
overlooked
benthic
surveys.
This
knowledge
gap
is
especially
true
Red
Sea,
where
sponge
abundance,
coverage
and
composition
scarce.
Furthermore,
date,
no
study
examined
sponges
Sea.
Here
we
compared
abundance
diversity
metrics
between
shallow
at
two
sites
Gulf
Aqaba,
northern
We
also
biotic
abiotic
parameters
determining
variability
depths.
Sponge
significantly
varied
with
depth
sites.
differed
However,
measured
water
column,
that
is,
Total
Organic
Carbon
(TOC),
Particulate
(POC),
NOx,
etc.,
did
not
differ
depths
sites,
except
Synechococcus
Prochlorococcus
concentration,
which
did.
The
findings
indicated
site
characteristics
interactions
may
an
essential
community
composition.
Between-site
differences
fauna
revealed
highlight
importance
considering
communities
factors
controlling
it
when
designing
management
tools
reefs,
particularly
Marine Ecology Progress Series,
Journal Year:
2021,
Volume and Issue:
670, P. 49 - 60
Published: May 21, 2021
Mesophotic
coral
reefs,
generally
defined
as
deep
reefs
between
30
and
150
m,
are
found
worldwide
largely
structured
by
changes
in
the
underwater
light
field.
Additionally,
it
is
increasingly
understood
that
reef-to-reef
variability
topography,
combined
with
quantitative
qualitative
field
increasing
depth,
significantly
influence
observed
distribution
abundance.
Here,
we
take
a
modeling
approach
to
examine
effects
of
inherent
optical
properties
water
column
on
irradiance
corals
exposed
along
shallow
mesophotic
depth
gradient.
In
particular,
roles
reef
topography
including
horizontal,
sloping
vertical
substrates
quantified,
well
differences
mounding,
plating
branching
colony
morphologies.
Downwelling
interact
such
for
mass
similar
properties,
reaching
benthos
varies
(i.e.
substrate
angle).
Coral
morphology,
however,
also
factor;
model
results
show
isolated
hemispherical
colonies
consistently
‘see’
greater
incident
irradiances
across
depths,
throughout
day,
compared
These
modeled
geometric-based
different
morphologies
not,
consistent
actual
depth-dependent
distributions
these
morphotypes,
where
dominate
you
go
deeper.
Other
factors,
cost
calcification,
arguably
contribute
differences,
but
irradiance-driven
patterns
strong
proximate
cause
communities
versus
substrates.