Stochasticity Highlights the Development of Both the Gastrointestinal and Upper-Respiratory-Tract Microbiomes of Neonatal Dairy Calves in Early Life
Angel Frazier,
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Logan Ferree,
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Aeriel D. Belk
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et al.
Animals,
Journal Year:
2025,
Volume and Issue:
15(3), P. 361 - 361
Published: Jan. 27, 2025
The
microbiome
of
dairy
calves
undergoes
extensive
change
due
to
various
forces
during
the
first
weeks
life.
Importantly,
diseases
such
as
bovine
respiratory
disease
(BRD)
and
calf
diarrhea
can
have
profound
impacts
on
early-life
microbiome.
Therefore,
a
longitudinal,
repeated-measures
pilot
study
was
designed
characterize
establishment
nasal
fecal
microbiomes
calves,
assess
governing
microbial
assembly,
evaluate
how
states
impact
these
ecologies.
Dairy
(n
=
19)
were
clinically
evaluated
for
gastrointestinal
across
three
beginning
at
age
≤
seven
days
old.
Fecal
57)
samples
taken
paired-end
16S
rRNA
gene
amplicon
sequencing.
Taxonomy
diversity
analyses
used
microbiomes.
Stochasticity
determinism
measured
using
normalized
stochasticity
testing
(NST)
Dirichlet
multinomial
model
(DMM).
All
tested
statistical
significance.
Clinical
observed
in
11
19
calves.
BRD
not
independently
among
cohort;
however,
two
presented
clinical
signs
both
diarrhea.
Taxonomic
analysis
revealed
that
highlighted
by
Bacteroidaceae
(40%;
relative
abundance),
Ruminococcaceae
(13%),
Lachnospiraceae
(10%),
with
changes
(Kruskal–Wallis;
p
<
0.05)
composition
(PERMANOVA;
0.05).
reduced
but
did
composition.
Nasal
featured
Moraxellaceae
(49%),
Mycoplasmataceae
(16%),
Pasteurellaceae
(3%).
While
no
seen
samples,
compositional
(p
NST
metrics
>
0.01)
DMM
stochastic,
neutral
theory-based
assembly
dynamics
govern
distinct
populations
drive
community
healthy
diarrheic
Language: Английский
Sugarcane Extract (Polygain™) Supplementation Reduces Enteric Methane Emission in Dairy Calves
Animals,
Journal Year:
2025,
Volume and Issue:
15(6), P. 781 - 781
Published: March 10, 2025
Polygain™
(PG),
a
polyphenolic
extract
from
sugarcane,
has
recently
been
identified
as
potential
additive
to
reduce
methane
(CH4)
emissions
in
livestock.
This
experiment
examined
the
effects
of
PG
on
enteric
CH4
emission
Holstein
Friesian
weaned
calves.
Calves
were
allocated
annual
pasture
grazing
and
received
supplementary
pellets
(200
g/calf/day;
Barastoc
calf-rearer
cubes—Ridley
Corporation).
The
experimental
design
followed
was
completely
randomized
(CRD),
comprising
24
female
calves
(4–5
months
old)
two
equal
groups;
control
(standard
pellets)
vs.
treatment
(pellets
formulated
by
adding
deliver
10
g
PG/calf/day).
Experimental
diets
fed
for
three
between
August
November
2023,
including
two-week
adaptation
period.
weighed
at
start
end
study.
A
GreenFeed
(C-Lock
Pvt
Ltd.)
monitoring
unit
(GEM)
used
measure
GHG
their
groups
2-day
rotational
cycle.
During
visit
GEM,
encouraged
enter
an
enclosed
area
or
individual
feeding
stall
where
CH4,
CO2,
O2,
H2,
H2S
measurements
taken.
results
indicated
significant
effect
supplementation
calves,
with
lower
production
supplemented
(26.66
±
2.06
g/day)
compared
group
(35.28
1.39
g/day,
p
<
0.001).
CO2/O2
ratio
(235
14)
(183
9.6)
differed
significantly
(p
Overall,
(10
g/calf/day)
reduced
average
per
day
did
not
adversely
affect
growth
development
confirming
its
useful
anti-methanogenic
potential.
Language: Английский
Characterization and Assembly Dynamics of the Microbiome Associated with Swine Anaerobic Lagoon Manure Treated with Biochar
Microorganisms,
Journal Year:
2025,
Volume and Issue:
13(4), P. 758 - 758
Published: March 27, 2025
Biochar
has
significant
potential
for
livestock
microbiomes
and
crop
agriculture
regarding
greenhouse
gas
emissions
reduction.
Therefore,
a
pilot
study
was
designed
to
investigate
the
effect
of
biochar
application
on
surface
swine
manure
from
an
open
lagoon
associated
microbial
communities.
Samples
were
collected
four
different
treatment
groups:
control
(n
=
4),
coarse
fine
ultra-fine
4).
Additionally,
aged
in
bulk
4)
assess
alterations
group.
The
method
16S
rRNA
amplicon
sequencing
along
with
analyses
performed.
Diversity
significantly
between
samples
all
groups
(Kruskal–Wallis;
p
<
0.05).
distinct
community
compositions
seen
using
both
weighted
unweighted
UniFrac
distance
matrices
(PERMANOVA;
0.01).
Differential
abundance
analysis
revealed
features
within
that
enriched
(q
0.001):
Idiomarina
spp.,
Geovibrio
thiophilus,
Parapusillimonas
granuli,
uncultured
Gammaproteobacteria
species.
Similarly,
Comamonas
spp.
Brumimicrobium
aurantiacum
(q-value
0.001)
depleted
by
treatments.
Stochastic
functional
treatments
not
deterministically
altering
assembly
patterns,
redundancy
evident
regardless
compositional
shifts.
Language: Английский
Decoding the dynamics of calves’ respiratory and gut microbiota: exploring stability, resistance, and individual patterns
Núria Mach,
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Maverick Monié--Ibanes,
No information about this author
Fatima‐Zohra Sikht
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et al.
Research Square (Research Square),
Journal Year:
2025,
Volume and Issue:
unknown
Published: April 10, 2025
Abstract
To
uncover
the
intricate
relationship
between
microbiota,
host,
and
environment
in
early
life,
we
monitored
temporal
dynamics
of
nasal
gut
microbiota
30
veal
calves
over
their
first
five
months.
Our
findings
reveal
that
stability
individuality
are
specific
to
each
body
site.
Notably,
fecal
demonstrated
greater
diversity,
bacterial
biomass,
stability,
homogeneity
as
animals
matured.
In
contrast,
exhibited
a
skewed
structure
higher
turnover,
likely
driven
by
microbial
immigration
mucociliary
clearance.
Weather,
diet,
antibiotics
were
associated
with
both
microbiotas,
alongside
host
cytokine
profiles.
Rectal
temperature
significantly
shifted
sites,
more
than
diarrhea
or
respiratory
scores.
As
aged,
synchronized
across
sites
emerged.
This
study
presents
detailed
view
patterns
connection
environment,
offering
valuable
insights
for
improving
management
during
critical
development
periods.
Language: Английский
Duration of dam contact had a long effect on calf rumen microbiota without affecting growth
Frontiers in Veterinary Science,
Journal Year:
2025,
Volume and Issue:
12
Published: May 12, 2025
Introduction
Separating
calves
from
their
mothers
at
birth
is
linked
to
calf
welfare
issues
and
disturbances
in
the
mother-calf
relationship.
It
can
also
disrupt
maturation
of
digestive
tract,
affecting
health.
has
been
demonstrated
that
separation
weaning
allows
for
optimal
establishment
ruminal
microbiota,
whereas
alters
colonization
dynamics.
We
postulated
4
weeks
cow-calf
contact,
a
potentially
more
socially
acceptable,
economically
pragmatic,
management
practice,
would
induce
similar
development
microbiota
observed
with
weaning,
thereby
conferring
benefits
on
health
growth.
Methods
studied
three
groups
14
pairs
(Holstein
Montbéliarde
breeds)
different
times:
contact
mother
(Mixed
group),
immediate
(at
birth,
Control
group)
delayed
(11
weeks,
Dam
group).
Rumen
microbial
was
monitored
9
per
group
3,
10,
13,
20
age
using
metataxonomic
approach.
Body
weight,
diarrhea
respiratory
disease
were
recorded
assess
calves'
overall
Serum
IgG
concentrations
monitored.
Results
No
differences
between
or
concentration.
The
incidence
lower
remained
dams
until
weaning.
After
separation,
Mixed
exhibited
an
increased
average
daily
gain.
analysis
as
aged,
there
increase
richness,
accompanied
by
corresponding
number
shared
species
over
time
all
groups.
Nevertheless,
discrete
pathways
identified
rumen
bacterial
communities,
evidenced
beta
diversity
time.
Additionally,
presence
had
favorable
effect
transfer
beneficial
during
early
stages
life.
However,
this
offset
elevated
detection
potential
pathogens
later
group.
Conclusion
In
study,
rearing
method
exerted
profound
enduring
influence
gastrointestinal
no
discernible
negative
impact
Language: Английский