Entropy,
Journal Year:
2023,
Volume and Issue:
25(1), P. 131 - 131
Published: Jan. 9, 2023
Biological
genotypes
do
not
code
directly
for
phenotypes;
developmental
physiology
is
the
control
layer
that
separates
genomes
from
capacities
ascertained
by
selection.
A
key
aspect
cellular
competency,
since
cells
are
passive
materials
but
descendants
of
unicellular
organisms
with
complex
context-sensitive
behavioral
capabilities.
To
probe
effects
different
degrees
competency
on
evolutionary
dynamics,
we
used
an
simulation
in
context
minimal
artificial
embryogeny.
Virtual
embryos
consisted
a
single
axis
positional
information
values
provided
cells’
‘structural
genes’,
operated
upon
cycle
which
embryos’
fitness
was
proportional
to
monotonicity
axial
gradient.
Evolutionary
dynamics
were
evaluated
two
modes:
hardwired
development
(genotype
encodes
phenotype),
and
more
realistic
mode
interact
prior
evaluation
function
(“regulative”
development).
We
find
even
ability
improve
their
position
embryo
results
better
performance
search.
Crucially,
observed
increasing
masks
raw
encoded
structural
genes,
selection
favoring
improvements
its
problem-solving
over
genome.
This
suggests
existence
powerful
ratchet
mechanism:
evolution
progressively
becomes
locked
intelligence
agential
substrate,
reduced
pressure
kind
feedback
loop
increasingly
puts
effort
into
software
than
perfecting
hardware
explains
very
puzzling
divergence
genome
anatomy
species
like
planaria.
In
addition,
it
identifies
possible
driver
scaling
time,
strategies
engineering
novel
systems
silico
bioengineering.
Frontiers in Systems Neuroscience,
Journal Year:
2022,
Volume and Issue:
16
Published: March 24, 2022
Synthetic
biology
and
bioengineering
provide
the
opportunity
to
create
novel
embodied
cognitive
systems
(otherwise
known
as
minds)
in
a
very
wide
variety
of
chimeric
architectures
combining
evolved
designed
material
software.
These
advances
are
disrupting
familiar
concepts
philosophy
mind,
require
new
ways
thinking
about
comparing
truly
diverse
intelligences,
whose
composition
origin
not
like
any
available
natural
model
species.
In
this
Perspective,
I
introduce
TAME-Technological
Approach
Mind
Everywhere-a
framework
for
understanding
manipulating
cognition
unconventional
substrates.
TAME
formalizes
non-binary
(continuous),
empirically-based
approach
strongly
agency.
provides
way
think
animal
sentience
an
instance
collective
intelligence
cell
groups,
arising
from
dynamics
that
manifest
similar
numerous
other
When
applied
regenerating/developmental
systems,
suggests
perspective
on
morphogenesis
example
basal
cognition.
The
deep
symmetry
between
problem-solving
anatomical,
physiological,
transcriptional,
3D
(traditional
behavioral)
spaces
drives
specific
hypotheses
by
which
capacities
can
increase
during
evolution.
An
important
medium
exploited
evolution
joining
active
subunits
into
greater
agents
is
developmental
bioelectricity,
implemented
pre-neural
use
ion
channels
gap
junctions
scale
up
cell-level
feedback
loops
anatomical
homeostasis.
This
architecture
multi-scale
competency
biological
has
implications
plasticity
bodies
minds,
greatly
potentiating
evolvability.
Considering
classical
recent
data
perspectives
computational
science,
evolutionary
biology,
cognition,
reveals
rich
research
program
with
many
regenerative
medicine,
artificial
intelligence.
Entropy,
Journal Year:
2022,
Volume and Issue:
24(6), P. 819 - 819
Published: June 12, 2022
One
of
the
most
salient
features
life
is
its
capacity
to
handle
novelty
and
namely
thrive
adapt
new
circumstances
changes
in
both
environment
internal
components.
An
understanding
this
central
several
fields:
evolution
form
function,
design
effective
strategies
for
biomedicine,
creation
novel
forms
via
chimeric
bioengineering
technologies.
Here,
we
review
instructive
examples
living
organisms
solving
diverse
problems
propose
competent
navigation
arbitrary
spaces
as
an
invariant
thinking
about
scaling
cognition
during
evolution.
We
argue
that
our
innate
recognize
agency
intelligence
unfamiliar
guises
lags
far
behind
ability
detect
it
familiar
behavioral
contexts.
The
multi-scale
competency
essential
adaptive
potentiating
providing
top-down
control
(not
micromanagement)
address
complex
disease
injury.
observer-focused
viewpoint
agnostic
scale
implementation,
illustrating
how
pivoted
similar
explore
exploit
metabolic,
transcriptional,
morphological,
finally
3D
motion
spaces.
By
generalizing
concept
behavior,
gain
perspectives
on
evolution,
system-level
biomedical
interventions,
construction
bioengineered
intelligences.
This
framework
a
first
step
toward
relating
highly
embodiments,
which
will
be
progress
artificial
regenerative
medicine
thriving
world
increasingly
populated
by
synthetic,
bio-robotic,
hybrid
beings.
Interface Focus,
Journal Year:
2023,
Volume and Issue:
13(3)
Published: April 14, 2023
The
aim
of
this
paper
is
to
introduce
a
field
study
that
has
emerged
over
the
last
decade,
called
Bayesian
mechanics.
mechanics
probabilistic
mechanics,
comprising
tools
enable
us
model
systems
endowed
with
particular
partition
(i.e.
into
particles),
where
internal
states
(or
trajectories
states)
system
encode
parameters
beliefs
about
external
their
trajectories).
These
allow
write
down
mechanical
theories
for
look
as
if
they
are
estimating
posterior
probability
distributions
causes
sensory
states.
This
provides
formal
language
modelling
constraints,
forces,
potentials
and
other
quantities
determining
dynamics
such
systems,
especially
entail
on
space
statistical
manifold).
Here,
we
will
review
state
art
in
literature
free
energy
principle,
distinguishing
between
three
ways
which
been
applied
path-tracking,
mode-tracking
mode-matching).
We
go
examine
duality
principle
constrained
maximum
entropy
both
lie
at
heart
discuss
its
implications.
Animal Cognition,
Journal Year:
2023,
Volume and Issue:
26(6), P. 1865 - 1891
Published: May 19, 2023
Abstract
Each
of
us
made
the
remarkable
journey
from
mere
matter
to
mind:
starting
life
as
a
quiescent
oocyte
(“just
chemistry
and
physics”),
slowly,
gradually,
becoming
an
adult
human
with
complex
metacognitive
processes,
hopes,
dreams.
In
addition,
even
though
we
feel
ourselves
be
unified,
single
Self,
distinct
emergent
dynamics
termite
mounds
other
swarms,
reality
is
that
all
intelligence
collective
intelligence:
each
consists
huge
number
cells
working
together
generate
coherent
cognitive
being
goals,
preferences,
memories
belong
whole
not
its
parts.
Basal
cognition
quest
understand
how
Mind
scales—how
large
numbers
competent
subunits
can
work
become
intelligences
expand
scale
their
possible
goals.
Crucially,
trick
turning
homeostatic,
cell-level
physiological
competencies
into
large-scale
behavioral
limited
electrical
brain.
Evolution
was
using
bioelectric
signaling
long
before
neurons
muscles
appeared,
solve
problem
creating
repairing
bodies.
this
Perspective,
I
review
deep
symmetry
between
developmental
morphogenesis
classical
behavior.
describe
highly
conserved
mechanisms
enable
implement
regulative
embryogenesis,
regeneration,
cancer
suppression.
sketch
story
evolutionary
pivot
repurposed
algorithms
cellular
machinery
navigation
morphospace
3D
world
which
so
readily
recognize
intelligence.
Understanding
underlie
construction
bodies
brains
provides
essential
path
understanding
natural
evolution,
bioengineered
design,
diverse
within
beyond
phylogenetic
history
Earth.
Cellular and Molecular Life Sciences,
Journal Year:
2023,
Volume and Issue:
80(6)
Published: May 8, 2023
Abstract
A
critical
aspect
of
evolution
is
the
layer
developmental
physiology
that
operates
between
genotype
and
anatomical
phenotype.
While
much
work
has
addressed
mechanisms
evolvability
specific
genetic
architectures
with
emergent
complexity,
one
not
been
sufficiently
explored:
implications
morphogenetic
problem-solving
competencies
for
evolutionary
process
itself.
The
cells
works
are
passive
components:
rather,
they
have
numerous
capabilities
behavior
because
derive
from
ancestral
unicellular
organisms
rich
repertoires.
In
multicellular
organisms,
these
must
be
tamed,
can
exploited,
by
process.
Specifically,
biological
structures
a
multiscale
competency
architecture
where
cells,
tissues,
organs
exhibit
regulative
plasticity—the
ability
to
adjust
perturbations
such
as
external
injury
or
internal
modifications
still
accomplish
adaptive
tasks
across
metabolic,
transcriptional,
physiological,
problem
spaces.
Here,
I
review
examples
illustrating
how
physiological
circuits
guiding
cellular
collective
impart
computational
properties
agential
material
serves
substrate
then
explore
ways
in
which
intelligence
during
morphogenesis
affect
evolution,
providing
new
perspective
on
search
This
key
feature
software
life
helps
explain
remarkable
speed
robustness
sheds
light
relationship
genomes
functional
phenotypes.
Nature Reviews Bioengineering,
Journal Year:
2023,
Volume and Issue:
1(1), P. 46 - 59
Published: Jan. 19, 2023
Bioengineering
can
address
many
important
needs,
from
transformative
biomedicine
to
environmental
remediation.
In
addition
practical
applications,
the
construction
of
new
living
systems
will
increase
our
understanding
biology
and
nurture
emerging
intersections
between
biological
computational
sciences.
this
Review,
we
discuss
transition
cell-level
synthetic
multicellular
morphology.
We
highlight
experimental
embryology
studies,
including
organoids
xenobots,
that
go
beyond
familiar,
default
outcomes
embryogenesis,
revealing
plasticity,
interoperability
problem-solving
capacities
life.
traditional
bottom-up
engineering
genes
proteins,
design
strategies
be
pursued
based
on
modelling
cell
collectives
as
agential
materials,
with
their
own
goals,
agendas
powers
problem-solving.
Such
an
bioengineering
approach
could
transform
developmental
biology,
regenerative
medicine
robotics,
building
frameworks
include
active,
matter.
Synthetic
morphogenesis
is
limited
by
knowledge
gaps
about
competencies
cells
groups.
This
Review
discusses
a
framework
empirically
determined
properties
cells,
goal-seeking
behaviours,
which
allow
creation
complex
devices
cannot
built
using
approaches.
Communications Biology,
Journal Year:
2024,
Volume and Issue:
7(1)
Published: March 28, 2024
Abstract
A
defining
feature
of
biology
is
the
use
a
multiscale
architecture,
ranging
from
molecular
networks
to
cells,
tissues,
organs,
whole
bodies,
and
swarms.
Crucially
however,
not
only
nested
structurally,
but
also
functionally:
each
level
able
solve
problems
in
distinct
problem
spaces,
such
as
physiological,
morphological,
behavioral
state
space.
Percolating
adaptive
functionality
one
competent
subunits
higher
functional
organization
requires
collective
dynamics:
multiple
components
must
work
together
achieve
specific
outcomes.
Here
we
overview
number
biological
examples
at
different
scales
which
highlight
ability
cellular
material
make
decisions
that
implement
cooperation
toward
homeodynamic
endpoints,
intelligence
by
solving
cell,
tissue,
whole-organism
levels.
We
explore
hypothesis
province
groups
animals,
an
important
symmetry
exists
between
science
swarms
competencies
cells
other
systems
scales.
then
briefly
outline
implications
this
approach,
possible
impact
tools
field
diverse
for
regenerative
medicine
synthetic
bioengineering.
Progress in Biophysics and Molecular Biology,
Journal Year:
2024,
Volume and Issue:
190, P. 28 - 169
Published: Jan. 26, 2024
Diverse
explanations
or
theories
of
consciousness
are
arrayed
on
a
roughly
physicalist-to-nonphysicalist
landscape
essences
and
mechanisms.
Categories:
Materialism
Theories
(philosophical,
neurobiological,
electromagnetic
field,
computational
informational,
homeostatic
affective,
embodied
enactive,
relational,
representational,
language,
phylogenetic
evolution);
Non-Reductive
Physicalism;
Quantum
Theories;
Integrated
Information
Theory;
Panpsychisms;
Monisms;
Dualisms;
Idealisms;
Anomalous
Altered
States
Challenge
Theories.
There
many
subcategories,
especially
for
Each
explanation
is
self-described
by
its
adherents,
critique
minimal
only
clarification,
there
no
attempt
to
adjudicate
among
theories.
The
implications
assessed
with
respect
four
questions:
meaning/purpose/value
(if
any);
AI
consciousness;
virtual
immortality;
survival
beyond
death.
A
Landscape
Consciousness,
I
suggest,
offers
perspective.
Biological Journal of the Linnean Society,
Journal Year:
2022,
Volume and Issue:
139(4), P. 457 - 486
Published: July 14, 2022
Abstract
The
rich
variety
of
biological
forms
and
behaviours
results
from
one
evolutionary
history
on
Earth,
via
frozen
accidents
selection
in
specific
environments.
This
ubiquitous
baggage
natural,
familiar
model
species
obscures
the
plasticity
swarm
intelligence
cellular
collectives.
Significant
gaps
exist
our
understanding
origin
anatomical
novelty,
relationship
between
genome
form,
strategies
for
control
large-scale
structure
function
regenerative
medicine
bioengineering.
Analysis
living
that
have
never
existed
before
is
necessary
to
reveal
deep
design
principles
life
as
it
can
be.
We
briefly
review
existing
examples
chimaeras,
cyborgs,
hybrots
other
beings
along
spectrum
containing
evolved
designed
systems.
To
drive
experimental
progress
multicellular
synthetic
morphology,
we
propose
teleonomic
(goal-seeking,
problem-solving)
behaviour
diverse
problem
spaces
a
powerful
invariant
across
possible
regardless
composition
or
origin.
Cybernetic
perspectives
chimaeric
morphogenesis
erase
artificial
distinctions
established
by
past
limitations
technology
imagination.
suggest
multi-scale
competency
architecture
facilitates
evolution
robust
problem-solving,
machines.
Creation
analysis
novel
will
be
an
essential
testbed
emerging
field
intelligence,
with
numerous
implications
medicine,
robotics
ethics.