bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Aug. 5, 2023
Abstract
Sepsis
is
the
leading
systemic
inflammatory
response
syndrome
in
worldwide,
yet
relatively
little
known
about
genes
and
signaling
pathways
involved
sepsis
progression.
The
current
investigation
aimed
to
elucidate
potential
key
candidate
its
associated
complications.
Next
generation
sequencing
(NGS)
dataset
(GSE185263)
was
downloaded
from
Gene
Expression
Omnibus
(GEO)
database,
which
included
data
348
samples
44
normal
control
samples.
Differentially
expressed
(DEGs)
were
identified
using
t-tests
DESeq2
R
package.
Next,
we
made
use
of
g:Profiler
analyze
gene
ontology
(GO)
REACTOME
pathway.
Then
protein-protein
interaction
(PPI)
these
DEGs
visualized
by
Cytoscape
with
Search
Tool
for
Retrieval
Interacting
Genes
(STRING).
Furthermore,
constructed
miRNA-hub
regulatory
network
TF-hub
among
hub
utilizing
miRNet
NetworkAnalyst
online
databases
tool
software.
Finally,
performed
receiver
operating
characteristic
(ROC)
curve
analysis
through
pROC
package
statistical
In
total,
958
identified,
479
up
regulated
down
regulated.
GO
results
showed
that
mainly
enriched
regulation
cellular
process,
stimulus,
extracellular
matrix
organization
immune
system.
PRKN,
KIT,
FGFR2,
GATA3,
ERBB3,
CDK1,
PPARG,
H2BC5,
H4C4
CDC20
might
be
Predicted
miRNAs
(e.g.,
hsa-mir-548ad-5p
hsa-mir-2113)
TFs
YAP1
TBX5)
found
significantly
correlated
conclusion,
DEGs,
relative
pathways,
genes,
miRNA
help
understanding
molecular
mechanisms
underlying
complications
progression
provide
targets
biomarkers
Cancers,
Journal Year:
2024,
Volume and Issue:
16(3), P. 611 - 611
Published: Jan. 31, 2024
Immunotherapy
has
emerged
as
a
pivotal
component
in
the
treatment
of
various
malignancies,
encompassing
lung,
skin,
gastrointestinal,
and
head
neck
cancers.
The
foundation
this
therapeutic
approach
lies
immune
checkpoint
inhibitors
(ICI).
While
ICIs
have
demonstrated
remarkable
efficacy
impeding
neoplastic
progression
these
tumours,
their
use
may
give
rise
to
substantial
toxicity,
notably
gastrointestinal
domain,
where
ICI
colitis
constitutes
significant
aspect.
optimal
positioning
Janus
kinase
(JAK)-signal
transducer
activator
transcription
(STAT)
pathway
management
remains
unclear.
Numerous
reports
highlighted
notable
improvements
through
application
pan-JAK-STAT
inhibitors,
with
tofacitinib,
particular,
reporting
evident
clinical
remission
colitis.
precise
mechanism
by
which
JAK-STAT
impact
pathogenetic
process
inadequately
understood.
However,
there
is
speculation
regarding
potential
role
modulating
memory
resident
CD8+
T
lymphocytes.
elucidation
requires
further
extensive
robust
evidence,
ongoing
JAK-STAT-based
trials
are
anticipated
contribute
valuable
insights.
PLoS ONE,
Journal Year:
2024,
Volume and Issue:
19(1), P. e0297260 - e0297260
Published: Jan. 16, 2024
Background
The
triple
negative
breast
cancer
(TNBC)
is
the
most
malignant
subtype
of
with
high
aggressiveness.
Although
paclitaxel-based
chemotherapy
scenario
present
mainstay
in
TNBC
treatment,
paclitaxel
resistance
still
a
striking
obstacle
for
cure.
So
it
imperative
to
probe
new
therapeutic
targets
through
illustrating
mechanisms
underlying
chemoresistance.
Methods
Single
cell
RNA
sequencing
(scRNA-seq)
data
cells
treated
at
different
points
were
downloaded
from
Gene
Expression
Omnibus
(GEO)
database.
Seurat
R
package
was
used
filter
and
integrate
scRNA-seq
expression
matrix.
Cells
further
clustered
by
FindClusters
function,
gene
marker
each
subset
defined
FindAllMarkers
function.
Then,
hallmark
score
calculated
AUCell
package,
biological
function
highly
expressed
interest
genes
analyzed
DAVID
Subsequently,
we
performed
pseudotime
analysis
explore
change
patterns
drug
SCENIC
identify
key
transcription
factors
(TFs).
Finally,
inhibitors
which
also
CTD
Results
We
finally
obtained
6
subsets
2798
cells,
marked
as
AKR1C3+,
WNT7A+,
FAM72B+,
RERG+,
IDO1+
HEY1+HCC1143
subsets,
among
HEY1+
proportions
increased
increasing
treatment
time,
then
regarded
subsets.
Hallmark
showed
that
these
associated
inflammatory
response,
virus
interferon
response
activation.
In
addition,
regulatory
networks
(GRNs)
indicated
3
TFs
(STAT1,
CEBPB
IRF7)
played
vital
role
promoting
development,
five
common
targeted
potential
combination
therapies
identified.
Conclusion
this
study,
identified
relevant
IFs
their
inhibitors,
offers
essential
molecular
basis
beneficial
guidance
clinical
therapy.
Biomedicines,
Journal Year:
2023,
Volume and Issue:
11(7), P. 1988 - 1988
Published: July 13, 2023
Indoleamine
2,3-dioxygenase
1
(IDO1)
is
a
heme
enzyme
involved
in
catalyzing
the
conversion
of
tryptophan
(Trp)
into
kynurenine
(Kyn)
at
first
rate-limiting
step
pathway
L-tryptophan
metabolism.
It
has
been
found
to
be
several
biological
functions
such
as
aging,
immune
microorganism,
neurodegenerative
and
infectious
diseases,
cancer.
IDO1
plays
an
important
role
tolerance
by
depleting
tumor
microenvironment
inhibiting
proliferation
effector
T
cells,
which
makes
it
emerging
biomarker
for
cancer
immunotherapy.
Therefore,
research
development
inhibitors
are
great
importance
therapy.
Of
interest,
IDO
activity
assays
value
screening
evaluation
inhibitors.
Herein,
we
mainly
review
IDO1,
regulation,
key
signaling
molecules
response
pathway,
clinical
trials.
Furthermore,
this
provides
comprehensive
overview
and,
particular,
discussion
currently
available
use
human
blood.
We
believe
that
promising
escape
laboratory
European Journal of Pharmacology,
Journal Year:
2024,
Volume and Issue:
968, P. 176420 - 176420
Published: Feb. 16, 2024
Proinflammatory
cytokines
powerfully
induce
the
rate-limiting
enzyme
indoleamine
2,
3-dioxygenase-1
(IDO-1)
in
dendritic
cells
(DCs)
and
monocytes,
it
converts
tryptophan
(Trp)
into
L-kynurenine
(KYN),
along
kynurenine
pathway
(KP).
This
mechanism
represents
a
crucial
innate
immunity
regulator
that
can
modulate
T
cells.
work
explores
role
of
IDO1
lymphocyte
proliferation
within
specific
pro-inflammatory
milieu.
Advanced Healthcare Materials,
Journal Year:
2024,
Volume and Issue:
unknown
Published: Dec. 19, 2024
Abstract
Fusobacterium
nucleatum
(
Fn
),
as
an
intestinal
pathogenic
bacterium,
is
closely
related
to
the
occurrence,
progression,
and
limited
therapeutic
efficacy
of
colorectal
cancer
(CRC).
The
presence
within
CRC
communities
induces
inflammatory
immunosuppressive
microenvironment
while
promoting
new
vessel
formation.
Therefore,
developing
novel
methods
efficiently
eliminate
enhance
outcomes
against
‐associated
great
significance.
Herein,
a
nanosystem
named
AFGTs‐PEG
,
which
integrates
antimicrobial
agent
lauric
acid
(LA),
antiangiogenic
gene
(sFlt‐1),
targeted
polymer
(OEI‐LA/PBA,
OLP),
DSPE‐mPEG,
boost
therapy
‐infected
CRC,
developed.
sFlt‐1
delivered
cells
through
lysosome
escape,
remarkably
inhibiting
formation
at
site
ultimately
leading
cell
death.
In
principle,
LA
used
its
biofilms,
remodel
by
restraining
generation
factors
preventing
polarization
M1
into
M2
macrophages,
thereby
mitigating
adverse
effects
on
therapy.
This
study
holds
promise
for
treatment
bacteria‐colonized
tumors.
Cancers,
Journal Year:
2023,
Volume and Issue:
15(18), P. 4639 - 4639
Published: Sept. 19, 2023
Pancreatic
cancer,
particularly
pancreatic
ductal
adenocarcinoma
(PDAC),
has
an
immune
suppressive
environment
that
allows
tumour
cells
to
evade
the
system.
The
aryl-hydrocarbon
receptor
(AHR)
is
a
transcription
factor
can
be
activated
by
certain
exo/endo
ligands,
including
kynurenine
(KYN)
and
other
tryptophan
metabolites.
Once
activated,
AHR
regulates
expression
of
various
genes
involved
in
responses
inflammation.
Previous
studies
have
shown
activation
PDAC
both
pro-tumorigenic
anti-tumorigenic
effects,
depending
on
context.
It
promote
growth
evasion
suppressing
anti-tumour
or
induce
effects
enhancing
cell
function.
In
this
study
involving
30
patients
healthy
individuals,
peripheral
blood
samples
were
analysed.
categorized
into
Low
(12
patients)
High/Medium
(18
groups
based
gene
mononuclear
(PBMCs).
group
showed
distinct
characteristics,
increased
levels
immune-suppressive
proteins
such
as
PDL1,
well
alterations
lymphocyte
monocyte
subtypes.
Functional
assays
demonstrated
changes
phagocytosis,
nitric
oxide
production,
cytokines
IL-1,
IL-6,
IL-10.
These
findings
indicate
AHR’s
level
crucial
role
dysregulation
could
potential
target
for
early
diagnostics
personalised
therapeutics.
Frontiers in Pharmacology,
Journal Year:
2023,
Volume and Issue:
14
Published: July 13, 2023
Longer
lifespan
produces
risks
of
age-associated
neurodegenerative
disorders
such
as
Alzheimer’s
disease
(AD),
which
is
characterized
by
declines
in
memory
and
cognitive
function.
The
pathogenic
causes
AD
are
thought
to
reflect
a
progressive
aggregation
the
brain
amyloid
plaques
composed
beta-amyloid
(Aß)
peptides
neurofibrillary
tangles
phosphorylated
tau
protein.
Recently,
long-standing
investigations
Aß
hypothesis
gained
support
via
passive
immunotherapy
targeting
soluble
Tau-targeting
approaches
using
antibodies
also
being
pursued
therapeutic
approach
AD.
In
genome-wide
association
studies,
modifier
gene
Bin1
has
been
identified
top
risk
factor
for
late-onset
human
populations,
with
recent
studies
suggesting
that
binds
influences
its
extracellular
deposition.
Interestingly,
before
emerges
brain,
levels
rise
colon,
where
Bin1—a
tissue
barrier
function
inflammation—acts
promote
inflammatory
bowel
(IBD).
This
connection
provocative
given
clinical
evidence
gut-brain
communication
disorders,
including
this
review,
we
discuss
Bin1-targeting
developed
our
laboratory
treat
IBD
may
offer
strategy
indirectly
reduce
deposition
limit
onset
or
progression.