Solanaceae IX: Systematics, genomics, and evolution DOI Open Access
Tiina Särkinen, Rocío Deanna, Leandro Lacerda Giacomin

et al.

Taxon, Journal Year: 2024, Volume and Issue: unknown

Published: Nov. 19, 2024

The nightshades (Solanaceae) are one of the most economically important plant families used as food crops, horticultural resources well medicines. family is globally distributed and currently includes 106 genera c. 2700 species. More about discovered every day, with much ongoing research taking place across globe. In past 2.5 years alone, 3 new 80 species have been described in Solanaceae (e.g., Orejuela & al., 2022; Dillon, 2023; Wang 2024), several genomes, pangenomes even a super-pangenome published Tang Bozan Li Lin Wu 2023a), morphological features such tuberous roots tribe Physalideae (Wang 2024) resin glands Solanum (da Silva-Sampaio 2021). To celebrate advance our knowledge family, we pleased to announce virtual special issue Taxon entitled "Solanaceae IX: Systematics, genomics, evolution". We invite submissions diverse list topics submission deadline on 28th February 2025. will be virtual, which means that articles released soon they accepted brought together into once all published. Manuscripts can submitted reference Special cover letter. All manuscript types (research articles, review perspectives, nomenclatural papers). theme purposely broad include any biological advances family. encourage high-quality global interest manuscripts, focused nightshade whether field taxonomy, nomenclature, phylogenetics/phylogenomics, phylogeography, morphology, anatomy, reproductive biology, development, cytogenetics, cytogenomics, phytochemistry, metabolomics, paleobotany, biogeography. Below outline main themes issue. Genomic fast accumulating (Sanatombi, 2024). data helping us understand genetic control traits He 2023) create tools for more effective crop breeding (Wu 2023b; Martina Data from chromosome studies cytogenetics potential provide perspective interpreting genome evolution organization (Deanna 2022). Beyond this, cytogenomic integrating molecular cytogenetic genomics comprehensively characterize variations identify accurately genomic changes associated ploidy events (Bombarely 2016; 2018). increased ease sequencing has enabled gain detailed nuanced understanding evolutionary relationships within over Gagnon Powell Huang Messeder still learned intricate between populations, species, genera, tribes Increased sampling revealing or confirming old ones revealed frequent cases discordance nuclear organellar genomes. These modern, densely sampled phylogenies insights processes underlie lineage diversification Solanaceae. terms nothing out reach nightshades. array plants, desert herbs Nolana) epiphytes Doselia) large trees some Solanum, Sessea). Careful anatomical needed fully structures, their function, homology da Silva Sampaio 2021; Figueroa Falcão 2003). Morphological linked recently phytochemistry human use. Phytochemical largely two secondary metabolites, tropane alkaloids glycoalkaloids, both useful humans. Micromorphology histochemistry gained popularity discovering function particular like trichomes Munien 2015). Phytochemistry continues attract interest, recent findings alkaloid biosynthesis genes Yang Zhang 2023), describing toxicity saponins (e.g, Lima Bezerra potentially uses glycoalkaloids medicine pesticides (Zhao Ostreikova Underlying many above taxonomic diversity With Solanaceae, not yet reached plateau expected coming years. Along being described, typifications combinations proposals conserve names Barboza Pretz Deanna, 2020; Alaria 2022), essential achieving stable nomenclature Multiple sources evidence considered resolve conflicts phylogenetics morphology Progress made mapping onto Hilgenhof building synthesis (https://about.worldfloraonline.org/tens/solanaceaesource-org), completing floristic accounts Palchetti Brazil Flora Group, Biogeographic allowed reconstruct shaped distribution Dupin 2017; Tovar Backes 2023). Coupling these fossil provided much-enhanced history through time Deanna Our ability use programmes depends biology plants genotype-to-phenotype interaction. Studies self-compatibility, pollination dispersal systems, seed germination continue reveal interesting mechanisms differences closely related 2016). Developmental aim discover pathways behind traits, including establishment specialized cell types, tissues, organs during life – underlying Hernández-Ciro Pabón-Mora, 2024; Satterlee

Language: Английский

Advances in Ranunculus asiaticus L. genome assembly and annotation based on long-read sequencing technology DOI
Matteo Martina, Luciana Gaccione, E. Vergnano

et al.

Acta Horticulturae, Journal Year: 2025, Volume and Issue: 1417, P. 23 - 28

Published: Jan. 1, 2025

Language: Английский

Citations

0

The Dark Side of the pollen: BSA-seq identified genomic regions linked to male sterility in globe artichoke DOI Creative Commons
Matteo Martina, Aldana Zayas, Ezio Portis

et al.

BMC Plant Biology, Journal Year: 2024, Volume and Issue: 24(1)

Published: May 17, 2024

Abstract Globe artichoke ( Cynara cardunculus var. scolymus ; 2n = 2x 34) is a food crop consumed for its immature flower heads. Traditionally, globe varietal types are vegetatively propagated. However, seed propagation makes it possible to treat the as annual, increasing field uniformity and reducing farmers costs, well pathogens diffusion. Despite artichoke’s significant agricultural value critical role of heterosis in development superior varieties, production hybrids remains challenging without reliable system large-scale industrial production. Male sterility (MS) presents promising avenue overcoming these challenges by simplifying hybridization process enabling cost-effective within genus, genic male has been linked three recessive loci artichoke, with no definitive genetic mechanism elucidated date. A 250 offsprings F 2 population, derived from cross between MS fertile (MF) cultivated cardoon C. altilis ) fitting monogenic segregation model (3:1), was analyzed through BSA-seq, aiming at identification genomic regions/genes affecting sterility. Four QTL regions were identified on chromosomes 4, 12, 14. By analyzing sequence around highest pick chromosome 14, cytochrome P450 CYP703A2 identified, carrying deleterious substitution (R/Q) fixed sterile parent. single dCAPS marker developed this SNP, allowing discrimination MF genotypes suitable applications plant breeding programs. 3D protein generated homology modeling, revealing that mutated amino acid part highly conserved motif crucial folding.

Language: Английский

Citations

1

Less is more: CRISPR/Cas9-based mutations in DND1 gene enhance tomato resistance to powdery mildew with low fitness costs DOI Creative Commons
Ruiling Li,

Lei Cui,

Matteo Martina

et al.

BMC Plant Biology, Journal Year: 2024, Volume and Issue: 24(1)

Published: Aug. 10, 2024

Powdery mildew (PM), triggered by Oidium neolycopersici, represents a significant threat and major concern for the productivity of tomato plants (Solanum lycopersicum L.). The presence susceptibility (S) genes in facilitates pathogen proliferation their dysfunction can lead to recessively inherited broad-spectrum durable type resistance. Past studies have demonstrated that disrupting function DND1 (Defense No Death 1) increases plant resilience against various pathogens, such as powdery but this comes at cost negatively affecting overall health vigor plant. To investigate possibility minimizing adverse effects dnd1 mutation while boosting disease resistance, CRISPR-Cas9 construct with four single guide RNAs targeting three exons SlDND1 (Solyc02g088560.4.1) was designed introduced into variety Moneymaker (MM) through Agrobacterium tumefaciens-mediated transformation. Three T

Language: Английский

Citations

1

Genomics DOI

Seyyed Mohammad Amin Mousavi Sagharchi,

Mohsen Sheykhhasan, Atousa Ghorbani

et al.

Advances in bioinformatics and biomedical engineering book series, Journal Year: 2024, Volume and Issue: unknown, P. 23 - 68

Published: Sept. 27, 2024

Genomics is an exciting and rapidly evolving field at the intersection of biology, computer science, statistics, which has made remarkable strides in recent years thanks to advancements high-throughput sequencing technologies. This allows us analyze understand genetic code organisms, from humans microorganisms, shedding light on everything diagnosis treatment disorders identification disease-causing genes pathogens, mysteries biodiversity. With its wide range applications, genomics transforming our understanding life itself.

Language: Английский

Citations

0

Solanaceae IX: Systematics, genomics, and evolution DOI Open Access
Tiina Särkinen, Rocío Deanna, Leandro Lacerda Giacomin

et al.

Taxon, Journal Year: 2024, Volume and Issue: unknown

Published: Nov. 19, 2024

The nightshades (Solanaceae) are one of the most economically important plant families used as food crops, horticultural resources well medicines. family is globally distributed and currently includes 106 genera c. 2700 species. More about discovered every day, with much ongoing research taking place across globe. In past 2.5 years alone, 3 new 80 species have been described in Solanaceae (e.g., Orejuela & al., 2022; Dillon, 2023; Wang 2024), several genomes, pangenomes even a super-pangenome published Tang Bozan Li Lin Wu 2023a), morphological features such tuberous roots tribe Physalideae (Wang 2024) resin glands Solanum (da Silva-Sampaio 2021). To celebrate advance our knowledge family, we pleased to announce virtual special issue Taxon entitled "Solanaceae IX: Systematics, genomics, evolution". We invite submissions diverse list topics submission deadline on 28th February 2025. will be virtual, which means that articles released soon they accepted brought together into once all published. Manuscripts can submitted reference Special cover letter. All manuscript types (research articles, review perspectives, nomenclatural papers). theme purposely broad include any biological advances family. encourage high-quality global interest manuscripts, focused nightshade whether field taxonomy, nomenclature, phylogenetics/phylogenomics, phylogeography, morphology, anatomy, reproductive biology, development, cytogenetics, cytogenomics, phytochemistry, metabolomics, paleobotany, biogeography. Below outline main themes issue. Genomic fast accumulating (Sanatombi, 2024). data helping us understand genetic control traits He 2023) create tools for more effective crop breeding (Wu 2023b; Martina Data from chromosome studies cytogenetics potential provide perspective interpreting genome evolution organization (Deanna 2022). Beyond this, cytogenomic integrating molecular cytogenetic genomics comprehensively characterize variations identify accurately genomic changes associated ploidy events (Bombarely 2016; 2018). increased ease sequencing has enabled gain detailed nuanced understanding evolutionary relationships within over Gagnon Powell Huang Messeder still learned intricate between populations, species, genera, tribes Increased sampling revealing or confirming old ones revealed frequent cases discordance nuclear organellar genomes. These modern, densely sampled phylogenies insights processes underlie lineage diversification Solanaceae. terms nothing out reach nightshades. array plants, desert herbs Nolana) epiphytes Doselia) large trees some Solanum, Sessea). Careful anatomical needed fully structures, their function, homology da Silva Sampaio 2021; Figueroa Falcão 2003). Morphological linked recently phytochemistry human use. Phytochemical largely two secondary metabolites, tropane alkaloids glycoalkaloids, both useful humans. Micromorphology histochemistry gained popularity discovering function particular like trichomes Munien 2015). Phytochemistry continues attract interest, recent findings alkaloid biosynthesis genes Yang Zhang 2023), describing toxicity saponins (e.g, Lima Bezerra potentially uses glycoalkaloids medicine pesticides (Zhao Ostreikova Underlying many above taxonomic diversity With Solanaceae, not yet reached plateau expected coming years. Along being described, typifications combinations proposals conserve names Barboza Pretz Deanna, 2020; Alaria 2022), essential achieving stable nomenclature Multiple sources evidence considered resolve conflicts phylogenetics morphology Progress made mapping onto Hilgenhof building synthesis (https://about.worldfloraonline.org/tens/solanaceaesource-org), completing floristic accounts Palchetti Brazil Flora Group, Biogeographic allowed reconstruct shaped distribution Dupin 2017; Tovar Backes 2023). Coupling these fossil provided much-enhanced history through time Deanna Our ability use programmes depends biology plants genotype-to-phenotype interaction. Studies self-compatibility, pollination dispersal systems, seed germination continue reveal interesting mechanisms differences closely related 2016). Developmental aim discover pathways behind traits, including establishment specialized cell types, tissues, organs during life – underlying Hernández-Ciro Pabón-Mora, 2024; Satterlee

Language: Английский

Citations

0