bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Oct. 12, 2024
Abstract
Napier
grass
(
Cenchrus
purpureus
)
is
a
C
4
perennial
species
native
to
Sub-Saharan
Africa
(SSA),
primarily
used
feed
cattle
in
SSA.
In
this
study,
we
sequenced
the
genomes
of
450
individuals,
sourced
from
20
different
countries.
More
than
170
million
DNA
variants
(SNPs
and
Indels)
were
detected,
which
∼1%
informative
SNPs
assess
genetic
diversity
collection.
Our
resequencing
study
provided
valuable
insights
into
across
global
Furthermore,
genome-wide
association
on
two
independent
populations,
identified
multiple
quantitative
trait
loci
(QTL)
that
significantly
associated
with
desirable
agronomic
traits,
such
as
biomass
yield,
nitrogen
cellulose
content.
Therefore,
our
results
will
serve
resource
safeguarding
unravelling
patterns
diversity,
face
climate
change,
spearhead
genomics-based
breeding
programs
develop
high-yielding
drought-tolerant
varieties
suitable
for
forage
biofuel
production.
The Cell Surface,
Journal Year:
2024,
Volume and Issue:
11, P. 100124 - 100124
Published: April 4, 2024
Pattern-Triggered
Immunity
(PTI)
in
plants
is
activated
upon
recognition
by
Pattern
Recognition
Receptors
(PRRs)
of
Damage-
and
Microbe-Associated
Molecular
Patterns
(DAMPs
MAMPs)
from
or
microorganisms,
respectively.
An
increasing
number
identified
DAMPs/MAMPs
are
carbohydrates
plant
cell
walls
microbial
extracellular
layers,
which
perceived
PRRs,
such
as
LysM
Leucine
Rich
Repeat-Malectin
(LRR-MAL)
receptor
kinases
(RKs).
LysM-RKs
(e.g.
CERK1,
LYK4
LYK5)
needed
for
fungal
MAMP
chitohexaose
(β-1,4-D-(GlcNAc)6,
CHI6),
whereas
IGP1/CORK1,
IGP3
IGP4
LRR-MAL
RKs
required
perception
β-glucans,
like
cellotriose
(β-1,4-D-(Glc)3,
CEL3)
mixed-linked
glucans.
We
have
explored
the
diversity
Arabidopsis
thaliana
seedlings
determining
PTI
responses
treatment
with
different
oligosaccharides
polysaccharides.
These
analyses
revealed
that
xylans
[β-1,4-D-(xylose)4
(XYL4)],
glucuronoxylans
α-1,4-glucans,
polysaccharides
seaweeds
activate
PTI.
Cross-elicitation
experiments
XYL4
other
glycans
showed
mechanism
DAMP
33-α-L-arabinofuranosyl-xylotetraose
(XA3XX)
shares
some
features
CEL3
but
differs
CHI6.
Notably,
XA3XX
impaired
igp1/cork1,
igp3
igp4
mutants,
almost
not
affected
cerk1
lyk4
lyk5
triple
mutant.
conserved
species
since
pre-treatment
triggers
enhanced
disease
resistance
tomato
to
Pseudomonas
syringae
pv
DC3000
wheat.
results
expand
triggering
immunity
support
relevance
activation.
The
characterization
immune
mechanisms
involved
carbohydrate-based
structures
recognized
further
understand
modulation.
show
here
DAMPs
β-1,4-D-(xylose)4
(XYL4)
(XA3XX),
expanding
function
these
glycan
Horticulturae,
Journal Year:
2024,
Volume and Issue:
10(4), P. 361 - 361
Published: April 5, 2024
Fresh
horticultural
products
are
economically
significant
foods
that
highly
demanded
by
consumers
worldwide;
however,
they
perishable
and
susceptible
to
deterioration
fungi,
which
contribute
their
short
shelf-life
cause
post-harvest
losses.
Among
the
alternatives
suggested
for
fungal
control
in
plants
is
elicitation
of
innate
plant
defense
mechanism,
may
be
activated
when
specific
molecules
phytopathogen,
such
as
chitin,
recognized.
Chitin
a
long-chain
polymer
N-acetyl-α-D-glucosamine
cell
wall;
it
possesses
biological
activity
eliciting
immune
response.
This
molecule
its
oligosaccharides
recognized
through
transmembrane
receptors
known
receptor-like
kinases
(RLKs)
proteins
(RLPs).
Mediated
cytoplasmic
(RLCKs),
bind
intracellular
domain
these
receptors,
initiate
signal
transduction
via
MAP
kinases,
triggering
In
model
plants,
Oryza
sativa
(rice)
Arabidopsis
thaliana,
set
RLK/RLP-RLCK-MAP
involved
immunity
triggered
chitin.
Furthermore,
products,
research
into
molecular
events
between
three
elements
has
similar
processes
occur.
However,
little
about
fruits.
Against
this
background,
present
review
provides
most
recent
relevant
findings
on
associations
response
chitin
outlines
could
participate
signaling
process
crops.
Functional Plant Biology,
Journal Year:
2024,
Volume and Issue:
51(6)
Published: May 9, 2024
The
investigation
into
cysteine-rich
receptor-like
kinases
(CRLKs)
holds
pivotal
significance
as
these
conserved,
upstream
signalling
molecules
intricately
regulate
fundamental
biological
processes
such
plant
growth,
development
and
stress
adaptation.
This
study
undertakes
a
comprehensive
characterisation
of
CRLKs
in
Solanum
tuberosum
(potato),
staple
food
crop
immense
economic
importance.
Employing
comparative
genomics
evolutionary
analyses,
we
identified
10
distinct
CRLK
genes
potato.
Further
categorisation
three
major
groups
based
on
sequence
similarity
was
performed.
Each
member
potato
systematically
named
according
to
its
chromosomal
position.
Multiple
alignment
phylogenetic
analyses
unveiled
conserved
gene
structures
motifs
within
the
same
groups.
genomic
distribution
observed
across
Chromosomes
2–5,
8
12.
Gene
duplication
analysis
highlighted
noteworthy
trend,
with
most
pairs
exhibiting
Ka/Ks
ratio
greater
than
one,
indicating
positive
selection
StCRLKs
Salt
drought
stresses
significantly
impacted
peroxidase
catalase
activities
seedlings.
presence
diverse
cis-regulatory
elements,
including
hormone-responsive
underscored
their
involvement
myriad
biotic
abiotic
responses.
Interestingly,
interactions
between
phytohormone
auxin
proteins
potential
auxin-mediated
regulatory
mechanism.
A
holistic
approach
combining
transcriptomics
quantitative
PCR
validation
StCRLK9
candidate
involved
response
heat,
salt
stresses.
lays
robust
foundation
for
future
research
functional
roles
family
potatoes,
offering
valuable
insights
mechanisms
applications
management.
BMC Genomics,
Journal Year:
2025,
Volume and Issue:
26(1)
Published: March 3, 2025
The
cysteine-rich
receptor-like
kinases
(CRKs)
family
in
plants
have
been
reported
to
perform
multiple
functions
against
various
stresses.
However,
the
CRK
bottle
gourd
(Lagenaria
siceraria)
has
not
well-explored.
Herein,
a
comprehensive
genome-wide
identification
and
characterization
of
gene
carried
out
under
Genome-wide
genes
gourds
Fusarium
oxysporum
f.
sp.
lagenariae
infection.
A
stringent
set
bioinformatic
analyses
identified
18
LsCRKs
genome.
Chromosomal
mapping
revealed
that
were
distributed
4
chromosomes
phylogenetic
analysis
divided
them
into
two
subgroups
on
tree.
synteny
collinearity
among
themselves
other
plant
CRKs
provided
insights
their
conservancy
expansion.
Gene
ontology
suggested
possible
roles
regulating
different
physiological
processes
stress
responses
gourd.
To
assess
involvement
F.
infection,
seedlings
transplanted
pots
with
oxysporum-infected
soil.
expression
exhibited
induced
expression,
suggesting
gourd-F.
interactions.
Additionally,
protein-protein
interaction
some
important
interacting
partners
crucial
present
work
explored
analyzed
Functional
predictions
network
modulating
dynamics
LsCKRs
fungal
pathogen
infection
suggest
response
gourds.
Overall,
results
study
provide
basic
information
about
response.
International Journal of Molecular Sciences,
Journal Year:
2024,
Volume and Issue:
25(12), P. 6643 - 6643
Published: June 17, 2024
Germ
cells
(GCs)
serve
as
indispensable
carriers
in
both
animals
and
plants,
ensuring
genetic
continuity
across
generations.
While
it
is
generally
acknowledged
that
the
timing
of
germline
segregation
differs
significantly
between
ongoing
debates
persist
new
evidence
continues
to
emerge.
In
this
review,
we
delve
into
studies
focusing
on
male
germ
cell
specifications
summarize
core
gene
regulatory
circuits
specification,
which
show
remarkable
parallels
those
governing
meristem
homeostasis.
The
similarity
establishment
plants
also
discussed.
Frontiers in Genetics,
Journal Year:
2025,
Volume and Issue:
16
Published: Feb. 11, 2025
In
complex
and
diverse
environments,
plants
face
constant
challenges
from
various
pathogens,
including
fungi,
bacteria,
viruses,
which
can
severely
impact
their
growth,
development,
survival.
Mosses,
representing
early
divergent
lineages
of
land
plants,
lack
traditional
vascular
systems
yet
demonstrate
remarkable
adaptability
across
habitats.
While
sharing
the
fundamental
innate
immune
common
to
all
mosses
have
evolved
distinct
chemical
physical
defense
mechanisms.
Notably,
they
exhibit
resistance
many
pathogens
that
typically
affect
plants.
Their
evolutionary
significance,
relatively
simple
morphology,
well-conserved
mechanisms
make
excellent
model
organisms
for
studying
plant-pathogen
interactions.
This
article
reviews
current
research
on
moss-pathogen
interactions,
examining
host-pathogen
specificity,
characterizing
infection
phenotypes
physiological
responses,
comparing
pathogen
susceptibility
between
angiosperms.
Through
this
analysis,
we
aim
deepen
our
understanding
plant
system
evolution
potentially
inform
innovative
approaches
enhancing
crop
disease
resistance.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 2, 2025
SUMMARY
Receptor-like
kinases
(RLKs),
particularly
the
Transmembrane
Kinase
(TMK)
family,
play
essential
roles
in
signaling
and
development,
with
TMKs
being
key
components
of
auxin
perception
downstream
phosphorylation
events.
While
TMKs’
involvement
canalization,
a
process
for
vasculature
formation
regeneration,
has
been
established,
nonetheless,
additional
regulatory
partners
remain
poorly
understood.
In
this
study,
we
identify
characterize
seven
leucine-rich
repeat
RLKs
(TINT1–TINT7)
as
novel
interactors
TMK1,
revealing
their
diverse
evolutionary,
structural,
functional
characteristics.
Our
results
show
that
TINTs
interact
TMK1
highlight
regulating
various
developmental
processes.
Majority
contributes,
together
to
TINT5
linking
other
canalization
component
CAMEL.
Beyond
also
establish
role
TINT-TMK1
interactions
processes
such
stomatal
movement
hypocotyl’s
gravitropic
response.
These
findings
suggest
TINTs,
through
interaction
are
integral
networks,
contributing
both
broader
plant
development.
International Journal of Molecular Sciences,
Journal Year:
2025,
Volume and Issue:
26(6), P. 2588 - 2588
Published: March 13, 2025
The
AGC
protein
kinase
family
plays
a
crucial
role
in
regulating
plant
growth,
immunity,
and
cell
death,
as
well
responses
to
abiotic
stresses
such
salt-induced
stress,
which
impact
development
productivity.
While
the
functions
of
kinases
have
been
thoroughly
studied
model
plants
Arabidopsis
thaliana,
their
roles
soybeans
(Glycine
max)
remain
poorly
understood.
In
this
study,
we
identified
69
genes
soybeans,
are
unevenly
distributed
across
19
chromosomes
classified
into
five
subfamilies:
PDK1,
AGCVI,
AGCVII,
AGCVIII,
(other).
Each
subfamily
shares
similar
exon–intron
structures
specific
motifs.
Gene
duplication
selection
pressure
analyses
revealed
that
GmAGC
gene
is
primarily
expanded
through
segmental
or
whole-genome
duplication,
with
all
undergoing
purifying
during
evolution.
Promoter
analysis
numerous
cis-regulatory
elements
associated
light,
hormonal,
stress
responses,
including
salt
stress.
expression
demonstrated
tissue-specific
patterns,
highest
levels
found
roots
(19.7%).
Among
54
analyzed
using
RT-qPCR,
significant
changes
were
observed
leaves
treated
sodium
chloride,
most
showing
increased
expression.
These
results
illustrate
critical
soybean
salinity
Our
findings
suggest
targeting
may
enhance
resistance
toxicity,
offering
valuable
insights
for
future
crop
improvement
strategies.