Identification of candidate host-specificity genes in Exserohilum turcicum using comparative genomics and transcriptomics
G3 Genes Genomes Genetics,
Journal Year:
2025,
Volume and Issue:
unknown
Published: April 11, 2025
Abstract
Exserohilum
turcicum
causes
northern
corn
leaf
blight
and
sorghum
blight.
While
the
same
species
cause
disease
in
both
crops,
strains
are
host-specific.
Here,
we
report
sequence
de
novo
annotated
assemblies
of
one
sorghum-
maize-specific
E.
strain.
The
were
sequenced
using
PacBio
Sequel
II
system.
total
genome
length
for
was
between
44
45
Mb
with
N50
∼2.5
Mb.
Ninety-eight
percent
Benchmarking
Universal
Single-Copy
Orthologs
(BUSCO)
had
complete
status.
estimated
number
genes
11,762
12,029
isolates,
respectively.
Funannotate,
EffectorP,
SignalP,
transcriptome
data
used
to
create
functional
annotation
each
genome.
whole-genome
comparison
identified
ten
large-scale
inversions
three
translocations
maize-
sorghum-specific
strains,
along
homologous
gene
duplications.
RNA
from
isolate
10
days
post-inoculation
maize
axenic
cultures.
Gene
expression
planta
growth
experiments
compared
Candidate
host-specificity
by
combining
results
comparison,
synteny
analysis,
annotations,
data.
Overall,
this
study
several
candidate
that
provide
insights
into
interaction
its
hosts.
Language: Английский
Cultivar Resistance and Alternative Crops to Manage Fusarium Wilt in Lettuce Caused by Fusarium oxysporum f. sp. Lactucae Race 4 and the Emerging Race 4+
Hanna Mestdagh,
No information about this author
Tinne Dockx,
No information about this author
Isabel Vandevelde
No information about this author
et al.
Journal of Phytopathology,
Journal Year:
2025,
Volume and Issue:
173(3)
Published: May 1, 2025
ABSTRACT
Fusarium
wilt,
caused
by
oxysporum
f.
sp.
lactucae
(Fol),
poses
a
severe
threat
to
butterhead
lettuce
(
Lactuca
sativa
L.)
production
in
Europe.
New
isolates
have
broken
through
resistance
Fol
race
4
existing
cultivars.
Pathogenicity
tests
on
differential
cultivar
set
and
genotyping
revealed
that
the
new
are
variants
of
4,
designated
here
as
4+.
The
differs
its
profile
Secreted
Xylem
SIX
)
genes:
while
both
races
contain
SIX9
SIX14
,
only
contains
SIX8
.
spp.
adapt
quickly,
which
signals
an
urgent
need
develop
effective
integrated
pest
management
(IPM)
strategy
for
wilt.
Crop
rotation
can
play
key
role
this
strategy,
especially
during
warmer
periods
when
is
most
aggressive.
Susceptibility
4+
root
colonisation
potential
were
assessed
various
types
alternative
vegetable
crops.
Most
showed
either
susceptibility
or
intermediate
resistance,
but
coral
was
resistant.
crops
asymptomatic
grown
soil
infested
with
also
did
not
support
colonisation.
However,
artificially
high
concentrations,
lamb's
Valerianella
locusta
symptomatic.
In
naturally
4+,
asymptomatic,
latent
growth
(and
potentially
4+)
observed
at
levels
comparable
susceptible
lettuce.
results
suggest
wilt
could
involve
cultivation
resistant
such
rocket
celery.
During
colder
periods,
cultivars
may
further
reduce
disease
pressure
allow
occasional
culture
cultivar.
Language: Английский