Analysis of Genetic Diversity and Population Structure of Liangshan Black Pigs, a New Indigenous Pig Breed in Shandong Province DOI Creative Commons
Jingxuan Li, Xin Zhang, Kaifeng Zhou

et al.

Agriculture, Journal Year: 2025, Volume and Issue: 15(9), P. 952 - 952

Published: April 27, 2025

Liangshan Black pigs are a new Chinese indigenous breed discovered during the Third National Survey of Livestock and Plant Genetic Resources. To uncover genetic diversity, population structure, potential exotic introgression in this breed, we sampled 191 from conservation genotyped these individuals using “Zhongxin-I” porcine chip, then conducted in-depth analyses context five introduced breeds. The results revealed that tested exhibited significant displayed uneven kinship relationships, were assigned to nine families according their clustering patterns phylogenetic tree. Further relationship with breeds demonstrated clustered separately breeds, had larger evolutionary distances possessed certain components especially those Duroc. These findings demonstrate generally an independent but slightly affected by In summary, our study not only contribute understanding characteristics also provide necessary data for implementation programs.

Language: Английский

A Comprehensive Review: Molecular and Genealogical Methods for Preserving the Genetic Diversity of Pigs DOI Creative Commons

Vladimir Margeta,

Dubravko Škorput, Ivona Djurkin Kušec

et al.

Applied Sciences, Journal Year: 2025, Volume and Issue: 15(6), P. 3394 - 3394

Published: March 20, 2025

Anthropogenic activities and rapidly increasing climate change have led to a significant loss of genetic diversity in domestic animals. Genealogical data traditionally been used monitor diversity. However, due dependency on pedigree completeness errors that can occur genealogical records, inaccurate estimation population parameters, such as the inbreeding coefficient or effective size, might occur. To reduce possible errors, it is necessary combine with molecular data. An integrated approach using leads optimization breeding programs while controlling within Molecular techniques single nucleotide polymorphism (SNP) genotyping, whole-genome sequencing (WGS), genome-wide association studies (GWASs) enable detailed understanding breed-specific profiles their use conservation programs. In addition, methods structural variation (SV) analysis pangenome epigenomic profiling provide more comprehensive insight into The particular importance for an autochthonous breed its resilience unfavorable climatic conditions, specific productive traits, disease resistance. A combined helps maintain sustainable agricultural systems under evolving environmental challenges.

Language: Английский

Citations

0

Association Analysis of ENPP1 Tissue Expression, Polymorphism, and Growth Traits in Xiangsu Pigs DOI Open Access
Jiaqi Chen, Jiajin Huang, Houqiang Xu

et al.

Genes, Journal Year: 2025, Volume and Issue: 16(4), P. 395 - 395

Published: March 29, 2025

Background: Pigs are vital agricultural animals, with growth traits serving as key indicators of their quality. Methods: In this study, we examined the mRNA expression ENPP1 a candidate gene in heart, liver, spleen, lungs, and kidneys at 3 days 6 months age by real-time polymerase chain reaction method single-nucleotide polymorphism (SNP) loci 165 Xiangsu pigs Sanger sequencing. Results: The different tissues stages was significantly different, it had high conservation species.. Sequence alignment reference data identified five SNP sites: g.64275T→C g.64429G→A intron 19, g.64850T→C g.64911G→A 20, g.64527T→C exon 20. Association analysis revealed that g.64275T→C, g.64429G→A, influence performance (p < 0.05). Conclusions: These findings suggest polymorphisms closely associated may provide valuable insights for molecular breeding breed.

Language: Английский

Citations

0

Analysis of Genetic Diversity and Population Structure of Liangshan Black Pigs, a New Indigenous Pig Breed in Shandong Province DOI Creative Commons
Jingxuan Li, Xin Zhang, Kaifeng Zhou

et al.

Agriculture, Journal Year: 2025, Volume and Issue: 15(9), P. 952 - 952

Published: April 27, 2025

Liangshan Black pigs are a new Chinese indigenous breed discovered during the Third National Survey of Livestock and Plant Genetic Resources. To uncover genetic diversity, population structure, potential exotic introgression in this breed, we sampled 191 from conservation genotyped these individuals using “Zhongxin-I” porcine chip, then conducted in-depth analyses context five introduced breeds. The results revealed that tested exhibited significant displayed uneven kinship relationships, were assigned to nine families according their clustering patterns phylogenetic tree. Further relationship with breeds demonstrated clustered separately breeds, had larger evolutionary distances possessed certain components especially those Duroc. These findings demonstrate generally an independent but slightly affected by In summary, our study not only contribute understanding characteristics also provide necessary data for implementation programs.

Language: Английский

Citations

0