Comparison of Plant Genomic DNA Extraction Kits Using the Proofman‐LMTIA Amplification Assay DOI
Wei Yao, Yajie Wang, Dan Zhou

et al.

Phytochemical Analysis, Journal Year: 2024, Volume and Issue: unknown

Published: Dec. 28, 2024

ABSTRACT Introduction The extraction of DNA is the basis molecular biology research. quality extracted one key factors for success experiments. Objective To select a suitable method Chinese medicinal herbs and seeds. Methods In this experiment, four commercial kits were used to extract genomic (gDNA) from Pinellia ternata (Thunb.) Breit. powder; Arisaema amurense Maxim. powder as well seeds Glycine max (L.) Merr. On hand, concentration purity by these compared. other nucleic acid amplification experiments performed on three samples each Proofman‐LMTIA methods, which novel isothermal technique. different determine methods dry herbal medicines efficiency curve show whether can be in Results results showed that high specificity optimal reaction temperatures 63, 59, 59°C P. Makino; A. G. Merr., respectively. gDNAs with all within acceptable ranges; meanwhile, gDNA Kit II was highest efficiency. Conclusion principle, concentration, purity, time taken extracting automated kit based magnetic detection.

Language: Английский

Impact of automated nucleic acid extraction platforms on plasma Cytomegalovirus DNA loads quantitated by real-time PCR normalized to the 1st WHO international standard DOI

Ángela Sánchez‐Simarro,

Eliseo Albert,

Paula de Michelena

et al.

Enfermedades infecciosas y microbiologia clinica (English ed ), Journal Year: 2025, Volume and Issue: 43(1), P. 28 - 31

Published: Jan. 1, 2025

Language: Английский

Citations

0

Review on Biphasic Blood Drying Method for Rapid Pathogen Detection in Bloodstream Infections DOI Creative Commons
Jongwon Lim,

Katherine Koprowski,

Matthew Wester

et al.

SLAS TECHNOLOGY, Journal Year: 2025, Volume and Issue: unknown, P. 100276 - 100276

Published: March 1, 2025

Rapid and accurate detection of pathogenic microorganisms in blood is critical for diagnosing life-threatening conditions such as bloodstream infections (BSIs). Current methods the identification bacteria from large volumes (5 mL) involve culture steps followed by DNA extraction/purification/concentration Polymerase Chain Reaction (PCR)-based nucleic acid amplification. extraction amplification directly samples hampered complexity matrix, resulting time-consuming labor-intensive processes. This review delves into recent advancements molecular diagnostics based on drying, coined 'biphasic reaction', highlights this new technique that attempts to overcome limitations traditional sample preparation The biphasic drying method, combination with isothermal loop-mediated (LAMP) or recombinase polymerase (RPA), has recently been shown improve sensitivity bacterial, viral, fungal pathogens ∼1 mL whole blood, while minimizing loss avoiding use kits. Furthermore, approach LAMP be a culture-free method capable detecting clinical CFU/mL ∼2.5 hours. represents significant reduction time compared current procedures bacterial prior PCR paper aims guide identify opportunities future applications technology.

Language: Английский

Citations

0

Portable DNA extraction integrated with LAMP-CRISPR/Cas12a technology for on-site detection of Salmonella Typhimurium DOI Creative Commons
Liang Zhang, Mengfan Zhang, Xingxing Liu

et al.

npj Science of Food, Journal Year: 2025, Volume and Issue: 9(1)

Published: March 24, 2025

The infection and outbreak of Salmonella typhimurium (S. typhimurium) highlight the need for developing a reliable on-site detection strategy fitting to various settings. However, due requirement specialized instruments trained personnel, traditional methods have be implemented in laboratories are not ideal applications. To achieve sample-to-answer field-deployable S. typhimurium, we developed an integrated nucleic acid platform combining single-vial loop-mediated isothermal amplification (LAMP)-clustered regularly interspaced short palindromic repeat (CRISPR)/Cas12a system, portable device smartphone app. This enables extraction, concentration, purification DNA, target, output visual fluorescent signals within 1 h. With this platform, 102 CFU/mL food environmental matrix was able accurately detected. method demonstrated excellent selectivity. Also, auxiliary application simplified result interpretation. Our exhibited potential better control respond outbreaks foodborne diseases, especially low-resource

Language: Английский

Citations

0

Research on real-time nucleic acid detection device based on microfluidic technology DOI Open Access
Shuo Wu, Jianxin Cheng, Xiaohua Cao

et al.

International Journal on Smart Sensing and Intelligent Systems, Journal Year: 2025, Volume and Issue: 18(1)

Published: Jan. 1, 2025

Abstract In recent years, the point-of-care testing (POCT) device for nucleic acid detection has received extensive attention. POCT provides rapid, high sensitivity and accuracy of on-site diagnosis can quantify in clinical samples real time. The integration microfluidics ensures accurate fluid control, minimizes sample volume, improves efficiency. addition, devices conduct multichannel analysis, facilitate continuous monitoring, provide comprehensive quantitative data. Due to its portability, cost-effectiveness, ease use, represents a promising solution extensive, reliable, timely various medical environments. This review summarizes research development based on microfluidic technology trend prospected.

Language: Английский

Citations

0

DNA and RNA Extraction from Plasma Using Magnetized Silica DOI
Karuppusamy Arunachalam, Puthanpura Sasidharan Sreeja

Springer protocols handbooks/Springer protocols, Journal Year: 2025, Volume and Issue: unknown, P. 111 - 116

Published: Jan. 1, 2025

Language: Английский

Citations

0

Exploring Life Detection on Mars: Understanding Challenges in DNA Amplification in Martian Regolith Analogue After Fe Ion Irradiation DOI Creative Commons
Alessia Cassaro, Claudia Pacelli, Silvano Onofri

et al.

Life, Journal Year: 2025, Volume and Issue: 15(5), P. 716 - 716

Published: April 29, 2025

The search for life beyond Earth currently hinges on the detection of biosignatures that are indicative current or past life, with terrestrial being sole known example. Deoxyribonucleic acid (DNA), which acts as long-term storage genetic information in all organisms, is considered a biosignature life. Techniques like Polymerase Chain Reaction (PCR) particularly useful they allow amplification DNA fragments, allowing even trace amounts material. This study aimed to detect extracted from colonies an Antarctic black fungus both when (i) alone and (ii) mixed Sulfatic Mars Regolith Simulant (S-MRS), after exposure increasing doses Fe ions (up 1 kGy). PCR-based methods were used detection. findings this revealed no samples Simulant, providing important insights into potential application these techniques situ during future space exploration missions their sample return program; it also gives input planetary protection discussions.

Language: Английский

Citations

0

Advances in Pretreatment Methods for Free Nucleic Acid Removal in Wastewater Samples: Enhancing Accuracy in Pathogenic Detection and Future Directions DOI Creative Commons
Kien A. Vu, Thu A. Nguyen, Thao P. Nguyen

et al.

Applied Microbiology, Journal Year: 2023, Volume and Issue: 4(1), P. 1 - 15

Published: Dec. 19, 2023

Accurate pathogenic detection in wastewater is critical for safeguarding public health and the environment. However, presence of free nucleic acids samples poses significant challenges to molecular accuracy. This comprehensive review explores current status future potential pretreatment methods remove from samples. The study contributes a analysis mechanisms, strengths, limitations various approaches, including physical, chemical, enzymatic processes. effect factors on removal efficiency these also discussed. enhances our comprehension techniques their vital role achieving precise complex matrices. Furthermore, it outlines perspectives developments improving speed effectiveness detection, contributing significantly disease surveillance, early warning systems, environmental protection.

Language: Английский

Citations

4

Nucleic Acid Purification through Nanoarchitectonics: Magnetic Bead Integration with Microfluidic Chip Technology DOI
Prachi Priya, K.S. Deepak, Satish Kumar Dubey

et al.

Journal of Micromechanics and Microengineering, Journal Year: 2024, Volume and Issue: 34(9), P. 095005 - 095005

Published: Aug. 22, 2024

Abstract Purified DNA and Polymerase Chain Reaction (PCR) are crucial parts of molecular biology techniques in various fields such as genomics, forensics, diagnostics. The proposed microfluidic device is used to perform several steps like the adsorption present processed PCR onto bare magnetic beads, cleaning contaminants with ethanol-diluted buffer reagent, eluting adsorbed an elution buffer, which further for downstream application. entire sample purification accomplished about 25 min. A comparative analysis conducted using a commercially available kit. By employing suggested chip alongside commercial kit, spectrophotometer utilized measure purity. This done by obtaining A260/A280 ratio, allows assessment both quantity purity extracted DNA. ratios spin column-based, stand-based, chip- based tests were 1.86, 1.98, 1.74, respectively. eluted findings indicated that quality was suitable future amplification. Additionally, this microchip-based has potential be bedside point care applications, time

Language: Английский

Citations

1

Automated microfluidic system for rapid, multiplexed nucleic acid extraction and detection of pathogens DOI

Lin Cheng,

Ru Wang,

Changhua Zou

et al.

Sensors and Actuators B Chemical, Journal Year: 2024, Volume and Issue: unknown, P. 137008 - 137008

Published: Nov. 1, 2024

Language: Английский

Citations

1

Advances in Pretreatment Methods for Free Nucleic Acid Removal in Wastewater Samples: Enhancing Accuracy in Pathogenic Detection and Future Directions DOI Open Access
Kien A. Vu, Thu A. Nguyen, Thao P. Nguyen

et al.

Published: Nov. 6, 2023

Accurate pathogenic detection in wastewater is critical for safeguarding public health and the environment. However, presence of free nucleic acids samples poses significant challenges to molecular accuracy. This comprehensive review explores current status future potential pretreatment methods remove from samples. The study contributes a analysis mechanisms, strengths, limitations various approaches, including physical, chemical, enzymatic processes. effect factors on removal efficiency these also discussed. enhances our comprehension techniques their vital role achieving precise complex matrices. Furthermore, it outlines perspectives developments improving speed effectiveness detection, contributing significantly disease surveillance, early warning systems, environmental protection.

Language: Английский

Citations

1