Identification and Characterization of miRNAs and lncRNAs Associated with Salinity Stress in Rice Panicles DOI Open Access

Conghui Jiang,

Yulong Wang,

Yanan He

et al.

International Journal of Molecular Sciences, Journal Year: 2024, Volume and Issue: 25(15), P. 8247 - 8247

Published: July 28, 2024

Salinity is a common abiotic stress that limits crop productivity. Although there wealth of evidence suggesting miRNA and lncRNA play important roles in the response to salinity rice seedlings reproductive stages, mechanism by which competing endogenous RNAs (ceRNAs) influence salt tolerance yield has been rarely reported. In this study, we conducted full whole-transcriptome sequencing panicles during period clarify role ceRNAs yield. A total 214 lncRNAs, 79 miRNAs, 584 mRNAs were identified as differentially expressed under stress. Functional analysis indicates they GO terms such stress, biosynthesis processes, stimuli, stimulus, well KEGG pathways secondary metabolite biosynthesis, carotenoid metabolic pathways, phenylpropanoid biosynthesis. ceRNA network comprising 95 lncRNA-miRNA-mRNA triplets was constructed. Two MSTRG.51634.2 MSTRG.48576.1, predicted bind osa-miR172d-5p regulate expression

Language: Английский

ASLncR: a novel computational tool for prediction of abiotic stress-responsive long non-coding RNAs in plants DOI
Upendra Kumar Pradhan, Prabina Kumar Meher,

Sanchita Naha

et al.

Functional & Integrative Genomics, Journal Year: 2023, Volume and Issue: 23(2)

Published: March 31, 2023

Language: Английский

Citations

8

Unveiling the epigenetic landscape of plants using flow cytometry approach DOI

Thakur Prava Jyoti,

Shivani Chandel, Rajveer Singh

et al.

Cytometry Part A, Journal Year: 2024, Volume and Issue: 105(4), P. 231 - 241

Published: March 4, 2024

Abstract Plants are sessile creatures that have to adapt constantly changing environmental circumstances. subjected a range of abiotic stressors as result unpredictable climate change. Understanding how stress‐responsive genes regulated can help us better understand plants conditions. Epigenetic markers dynamically change in response stimuli, such DNA methylation and histone modifications known regulate gene expression. Individual cells or particles' physical and/or chemical properties be measured using the method flow cytometry. It may therefore used evaluate changes methylation, modifications, other epigenetic markers, making it potent tool for researching epigenetics plants. We explore use cytometry technique examining traits this thorough discussion. The separation cell nuclei their subsequent labeling with fluorescent antibodies, offering information on mechanisms when utilizing also go through high‐throughput data analysis methods unravel complex processes occurring inside plant systems.

Language: Английский

Citations

2

Biological Activity of Artificial Plant Peptides Corresponding to the Translational Products of Small ORFs in Primary miRNAs and Other Long “Non-Coding” RNAs DOI Creative Commons
Tatiana N. Erokhina, D. Yu. Ryazantsev, С. К. Завриев

et al.

Plants, Journal Year: 2024, Volume and Issue: 13(8), P. 1137 - 1137

Published: April 18, 2024

Generally, lncPEPs (peptides encoded by long non-coding RNAs) have been identified in many plant species of several families and some animal species. Importantly, molecular mechanisms the miPEPs primary microRNAs, pri-miRNAs) are often poorly understood different flowering plants. Requirement for additional studies these directions is highlighted alternative findings concerning positive regulation pri-miRNA/miRNA expression synthetic Further extensive also needed to understand full set their roles eukaryotic organisms. This review mainly aims consider available data on regulatory functions miPEPs. Studies chemically synthesized analyzing fine functional activities reviewed. Brief description identify lncORFs (open reading frames protein products provided.

Language: Английский

Citations

1

Heavy Metal Contamination in Soil: Implications for Crop Resilience and Abiotic Stress Management DOI Creative Commons
Hany M. Almotairy

IntechOpen eBooks, Journal Year: 2024, Volume and Issue: unknown

Published: May 8, 2024

This chapter rigorously examines soil toxic metal/metalloid contamination and its profound implications on crop resilience, focusing abiotic stress conditions. It begins by elucidating the natural anthropogenic origins of contamination, illustrating how plants absorb these toxicants, elaborating their physio-molecular responses. The accentuates detrimental manifestations impaired photosynthesis, nutrient uptake, oxidative management, underscoring urgent need for effective mitigation strategies. Phytoremediation genetic engineering advancements are explored as promising strategies to optimize plant resilience in contaminated environments. Novel methodologies, including phytochelatins strategic application engineering, demonstrate potential improving growth showcasing significant toward sustainable agricultural practices. Moreover, interaction between microbes is dissected, revealing a symbiotic relationship that influences bioavailability metals/metalloids optimizes health under insight into microbial assistance opens new avenues research management remediation. contributes essential knowledge bolstering against presenting cutting-edge findings sophisticated techniques. emphasizes critical role innovative overcoming challenges posed paving way achieving productivity food security face environmental stressors.

Language: Английский

Citations

1

Identification and Characterization of miRNAs and lncRNAs Associated with Salinity Stress in Rice Panicles DOI Open Access

Conghui Jiang,

Yulong Wang,

Yanan He

et al.

International Journal of Molecular Sciences, Journal Year: 2024, Volume and Issue: 25(15), P. 8247 - 8247

Published: July 28, 2024

Salinity is a common abiotic stress that limits crop productivity. Although there wealth of evidence suggesting miRNA and lncRNA play important roles in the response to salinity rice seedlings reproductive stages, mechanism by which competing endogenous RNAs (ceRNAs) influence salt tolerance yield has been rarely reported. In this study, we conducted full whole-transcriptome sequencing panicles during period clarify role ceRNAs yield. A total 214 lncRNAs, 79 miRNAs, 584 mRNAs were identified as differentially expressed under stress. Functional analysis indicates they GO terms such stress, biosynthesis processes, stimuli, stimulus, well KEGG pathways secondary metabolite biosynthesis, carotenoid metabolic pathways, phenylpropanoid biosynthesis. ceRNA network comprising 95 lncRNA-miRNA-mRNA triplets was constructed. Two MSTRG.51634.2 MSTRG.48576.1, predicted bind osa-miR172d-5p regulate expression

Language: Английский

Citations

1