AIDS Research and Therapy,
Journal Year:
2024,
Volume and Issue:
21(1)
Published: May 3, 2024
Abstract
Background
Human
genetic
contribution
to
HIV
progression
remains
inadequately
explained.
The
type
1
interferon
(IFN)
pathway
is
important
for
host
control
of
and
variation
in
IFN
genes
may
contribute
disease
progression.
This
study
assessed
the
impact
variations
at
gene
level
on
HIV-1
viral
load
(VL).
Methods
Two
cohorts
antiretroviral
(ART)
naïve
participants
living
with
(PLWH)
either
early
(
START
)
or
advanced
infection
FIRST
were
analysed
separately.
Type
(n
=
17)
receptor
subunits
IFNAR1,
IFNAR2
examined
both
cumulated
analysis
individual
analysis.
SKAT-O
was
applied
detect
associations
between
genotype
entry
(log10
transformed)
as
a
proxy
set
point
VL;
P-values
corrected
using
Bonferroni
(P
<
0.0025).
Results
analyses
among
those
included
2429
individuals
from
five
continents.
median
VL
14,623
(IQR
3460–45100)
copies/mL.
Across
673
SNPs
within
19
genes,
no
significant
association
detected.
Conversely,
examining
showed
borderline
IFNW1
,
significance
remained
after
separate
adjustments
age,
CD4
+
T-cell
count,
/CD8
ratio
recent
infection.
When
controlling
population
structure
linear
mixed
effects
models
(LME),
addition
principal
components
used
main
model,
this
longer
(p
0.0244).
In
subgroup
stratified
by
geographical
region,
only
observed
African
participants,
although,
not
when
LME.
Of
17
region
rs79876898
(A
>
G)
associated
0.0020,
beta
0.32;
G
higher
than
A)
single
SNP
analyses.
findings
reproduced
participants.
Conclusion
cohort
ART-naïve
stages
their
infection,
however,
sensitivity
that
controlled
structures
Journal of Medical Virology,
Journal Year:
2024,
Volume and Issue:
96(3)
Published: Feb. 25, 2024
Severe
fever
with
thrombocytopenia
syndrome
(SFTS)
is
an
emerging
tick-borne
hemorrhagic
disease
high
fatality
rate
of
10%-20%.
Vaccines
or
specific
therapeutic
measures
remain
lacking.
Human
interferon
inducible
transmembrane
protein
3
(hIFITM3)
a
broad-spectrum
antiviral
factor
targeting
viral
entry.
However,
the
activity
hIFITM3
against
SFTS
virus
(SFTSV)
and
functional
mechanism
IFITM3
remains
unclear.
Here
we
demonstrate
that
endogenous
provides
protection
SFTSV
infection
participates
in
anti-SFTSV
effect
type
Ⅰ
Ⅲ
interferons
(IFNs).
overexpression
exhibits
function
by
blocking
Gn/Gc-mediated
entry
fusion.
Further
studies
showed
binds
Gc
directly
its
intramembrane
domain
(IMD)
responsible
for
this
interaction
restriction
Mutation
two
neighboring
cysteines
on
IMD
weakens
IFITM3-Gc
attenuates
IFITM3,
suggesting
may
partly
mediate
inhibition
Overall,
our
data
first
time
plays
critical
role
IFNs-mediated
response,
uncover
novel
infection,
highlighting
potential
clinical
intervention
disease.
Annual Review of Virology,
Journal Year:
2020,
Volume and Issue:
7(1), P. 333 - 350
Published: Sept. 29, 2020
While
analyses
of
cell
populations
provide
averaged
information
about
viral
infections,
single-cell
offer
individual
consideration,
thereby
revealing
a
broad
spectrum
diversity
as
well
identifying
extreme
phenotypes
that
can
be
exploited
to
further
understand
the
complex
virus-host
interplay.
Single-cell
technologies
applied
in
context
human
immunodeficiency
virus
(HIV)
infection
proved
valuable
tools
help
uncover
specific
biomarkers
novel
candidate
players
interactions.
This
review
aims
at
providing
an
updated
overview
field
HIV
and
acquired
knowledge
on
infection,
latency,
host
response.
Although
is
pioneering
example,
similar
approaches
have
proven
for
elucidating
behavior
interplay
range
other
viruses.
Viruses,
Journal Year:
2020,
Volume and Issue:
12(12), P. 1464 - 1464
Published: Dec. 18, 2020
Innate
immune
sensors
and
restriction
factors
are
cellular
proteins
that
synergize
to
build
an
effective
first
line
of
defense
against
viral
infections.
usually
constitutively
expressed
capable
detecting
pathogen-associated
molecular
patterns
(PAMPs)
via
specific
pattern
recognition
receptors
(PRRs)
stimulate
the
response.
Restriction
frequently
upregulated
by
interferons
(IFNs)
may
inhibit
pathogens
at
essentially
any
stage
their
replication
cycle.
Members
Pyrin
hematopoietic
interferon-inducible
nuclear
(HIN)
domain
(PYHIN)
family
have
initially
been
recognized
as
important
foreign
nucleic
acids
activators
inflammasome
IFN
Accumulating
evidence
shows,
however,
least
three
four
members
human
PYHIN
restrict
independently
sensing
innate
activation.
In
this
review,
we
provide
overview
on
role
in
antiviral
countermeasures.
Cell Reports,
Journal Year:
2023,
Volume and Issue:
42(5), P. 112442 - 112442
Published: April 25, 2023
Cyclic
GMP-AMP
synthase
(cGAS)
recognizes
Y-form
cDNA
of
human
immunodeficiency
virus
type
1
(HIV-1)
and
initiates
antiviral
immune
response
through
cGAS-stimulator
interferon
genes
(STING)-TBK1-IRF3-type
I
(IFN-I)
signalingcascade.
Here,
we
report
that
the
HIV-1
p6
protein
suppresses
HIV-1-stimulated
expression
IFN-I
promotes
evasion.
Mechanistically,
glutamylated
at
residue
Glu6
inhibits
interaction
between
STING
tripartite
motif
32
(TRIM32)
or
autocrine
motility
factor
receptor
(AMFR).
This
subsequently
K27-
K63-linked
polyubiquitination
K337,
therefore
inhibiting
activation,
whereas
mutation
partially
reverses
inhibitory
effect.
However,
CoCl2,
an
agonist
cytosolic
carboxypeptidases
(CCPs),
counteracts
glutamylation
These
findings
reveal
a
mechanism
which
mediates
evasion
provides
therapeutic
drug
candidate
to
treat
infection.
Viruses,
Journal Year:
2020,
Volume and Issue:
12(6), P. 636 - 636
Published: June 11, 2020
Death
domain-associated
protein
6
(Daxx)
is
a
multifunctional,
ubiquitously
expressed
and
highly
conserved
chaperone
involved
in
numerous
cellular
processes,
including
apoptosis,
transcriptional
repression,
carcinogenesis.
In
2015,
we
identified
Daxx
as
an
antiretroviral
factor
that
interfered
with
HIV-1
replication
by
inhibiting
the
reverse
transcription
step.
present
study,
sought
to
unravel
molecular
mechanism
of
Daxx-mediated
restriction
and,
particular,
identify
protein(s)
targets
order
achieve
its
antiviral
activity.
First,
show
SUMO-interacting
motif
(SIM)
located
at
C-terminus
strictly
required
for
inhibit
transcription.
By
performing
quantitative
proteomic
screen
combined
classical
biochemical
analyses,
found
associated
incoming
cores
through
SIM-dependent
interaction
cyclophilin
A
(CypA)
capsid
(CA).
was
reside
within
multiprotein
complex
viral
capsids,
also
containing
TNPO3,
TRIM5α,
TRIM34.
Given
well-known
influence
these
factors
on
stability
cores,
investigated
effect
cytoplasmic
fate
prevented
uncoating
manner.
Altogether,
our
findings
suggest
that,
recruiting
TRIM34
possibly
other
proteins
onto
CA-bound
CypA,
increases
their
stability,
thus
preventing
Our
study
uncovers
previously
unknown
function
early
steps
infection
further
illustrates
how
are
two
tightly
interdependent
processes.
Frontiers in Pharmacology,
Journal Year:
2022,
Volume and Issue:
13
Published: April 6, 2022
Background:
The
pathological
differences
between
Crohn’s
disease
(CD)
and
ulcerative
colitis
(UC)
are
substantial
unexplained
yet.
Here,
we
aimed
to
identify
potential
regulators
that
drive
different
pathogenesis
of
CD
UC
by
causal
inference
analysis
transcriptome
data.
Methods:
Kruskal–Wallis
Dunnett’s
tests
were
performed
differentially
expressed
genes
(DEGs)
among
patients,
controls.
Subsequently,
pathways
(DEPs)
identified
used
construct
the
interaction
network
DEPs.
Causal
was
IBD
subtype-regulators.
expression
subtype-regulators
their
downstream
validated
qRT-PCR
with
an
independent
cohort.
Results:
Compared
control
group,
1,352
2,081
DEGs
in
groups,
respectively.
Multiple
DEPs
closely
related
inflammation-related
pathways,
such
as
NOD-like
receptor
signaling,
IL-17
chemokine
signaling
pathways.
Based
on
priori
DEPs,
IFNG
GBP5
results
discovery
cohort
showed
level
,
NLRP3
significantly
higher
group
than
group.
regulation
relationships
confirmed
data
from
qRT-PCR.
Conclusion:
Our
study
suggests
trigger
more
intense
innate
immunity
inflammatory
responses
those
UC.
findings
reveal
pathomechanical
may
contribute
personalized
treatment
for
Cells,
Journal Year:
2022,
Volume and Issue:
11(14), P. 2240 - 2240
Published: July 19, 2022
Gamma-interferon
(γ-IFN)
significantly
inhibits
infection
by
replication-defective
viral
vectors
derived
from
the
human
immunodeficiency
virus
type
1
(HIV-1)
or
murine
leukemia
(MLV)
but
underlying
mechanism
remains
unclear.
Previously
we
reported
that
knockdown
of
γ-IFN-inducible
lysosomal
thiolreductase
(GILT)
abrogates
antiviral
activity
γ-IFN
in
TE671
cells
not
HeLa
cells,
suggesting
other
host
factors
are
involved
its
cells.
We
identified
cellular
factors,
expression
which
induced
using
a
microarray,
and
analyzed
effects
11
γ-IFN-induced
on
retroviral
vector
infection.
Our
results
showed
exogenous
FAT10,
IFI6,
IDO1
both
HIV-1-
MLV-based
infections.
The
was
decreased
function
IDO1,
GILT
were
simultaneously
inhibited.
is
an
enzyme
metabolizes
essential
amino
acid,
tryptophan.
However,
did
restrict
Atg3-silencing
autophagy
occur.
This
study
found
γ-IFN,
inducing
autophagy.
Frontiers in Cellular and Infection Microbiology,
Journal Year:
2021,
Volume and Issue:
11
Published: Sept. 21, 2021
The
induction
of
antiviral
effector
proteins
as
part
a
homeostatically
controlled
innate
immune
response
to
infection
plays
critical
role
in
limiting
the
propagation
and
transmission
respiratory
pathogens.
However,
prolonged
this
can
lead
lung
hyperinflammation,
tissue
damage,
failure.
We
hypothesized
that
tissues
exposed
constant
threat
may
constitutively
express
higher
levels
reduce
need
activate
potentially
harmful
defences.
By
analysing
transcriptomic
data
derived
from
range
human
tissues,
we
identify
genes
relative
other
mucosal
non-mucosal
tissues.
using
primary
cell
lines
airways
rhesus
macaques,
show
interferon-stimulated
protein
TRIM22
(TRIpartite
Motif
22)
be
expressed
independently
viral
or
stimulation.
These
findings
contrast
with
previous
reports
have
shown
expression
laboratory-adapted
require
interferon
demonstrate
constitutive
are
sufficient
inhibit
onset
avian
influenza
A
virus
(IAV)
by
restricting
transcription
interferon-mediated
Thus,
confer
pre-existing
(intrinsic)
intracellular
defence
against
IAV
cells
tract.
Our
highlight
importance
tissue-specific
cell-type
dependent
patterns
gene
restriction
outset
infection.
Viruses,
Journal Year:
2023,
Volume and Issue:
15(11), P. 2206 - 2206
Published: Nov. 1, 2023
HIV
infection
impairs
host
immunity,
leading
to
progressive
disease.
An
anti-retroviral
treatment
efficiently
controls
viremia
but
cannot
completely
restore
the
immune
dysfunction
in
HIV-infected
individuals.
Both
and
viral
factors
determine
rate
of
disease
progression.
Among
factors,
innate
immunity
plays
a
critical
role;
however,
mechanism(s)
associated
with
dysfunctional
responses
are
poorly
understood
among
progressors,
which
was
investigated
here.
The
gene
expression
profiles
TLRs
cytokines
(LTNPs
progressors)
HIV-uninfected
individuals
were
examined.
Since
progressors
showed
dysregulated
TLR-mediated
response,
we
role
TLR
agonists
restoring
functions
progressors.
stimulation
PBMCs
TLR3
agonist-poly:(I:C),
TLR7
agonist-GS-9620
TLR9
agonist-ODN
2216
resulted
an
increased
IFN-α,
IFN-β
IL-6.
Interestingly,
IFITM3,
BST-2,
IFITM-3,
IFI-16
also
upon
agonists,
respectively.
To
further
understand
molecular
mechanism
involved,
miR-155
explored.
Increased
noted
MiR-155
inhibition
upregulated
TLR3,
NF-κB,
IRF-3,
TNF-α
APOBEC-3G,
BST-2
genes
conclude,
negatively
regulates
as
wel
l
restriction
play
important
mounting
anti-HIV
responses;
hence,
targeting
might
be
helpful
devising
strategic
approaches
towards
alleviating