Overview on biomarkers for immune oncology drugs
Exploration of Targeted Anti-tumor Therapy,
Journal Year:
2025,
Volume and Issue:
6
Published: March 17, 2025
Although
immune
checkpoint
inhibitors
(ICIs)
are
widely
used
in
clinical
oncology,
less
than
half
of
treated
cancer
patients
derive
benefit
from
this
therapy.
Both
tumor-
and
host-related
variables
implicated
response
to
ICIs.
The
predictive
value
PD-L1
expression
is
confined
only
several
types,
so
molecule
not
an
agnostic
biomarker.
Highly
elevated
tumor
mutation
burden
(TMB)
caused
either
by
excessive
carcinogenic
exposure
or
a
deficiency
DNA
repair
reliable
indicator
for
ICI
efficacy,
as
exemplified
tumors
with
high-level
microsatellite
instability
(MSI-H).
Other
potentially
relevant
tumor-related
characteristics
include
gene
signatures,
pattern
infiltration
cells,
and,
perhaps,
some
immune-response
modifying
somatic
mutations.
Host-related
factors
have
yet
been
comprehensively
considered
trials.
Microbiome
composition,
markers
systemic
inflammation
[e.g.,
neutrophil-to-lymphocyte
ratio
(NLR)],
human
leucocyte
antigen
(HLA)
diversity
may
influence
the
efficacy
Studies
on
biomarkers
likely
reveal
modifiable
host
characteristics,
which
can
be
utilized
direct
antitumor
defense.
Examples
latter
approach
priming
therapy
cytotoxic
drugs
elevation
microbiome
modification.
Language: Английский
Artificial intelligence and neoantigens: paving the path for precision cancer immunotherapy
Alla Bulashevska,
No information about this author
Zsófia Nacsa,
No information about this author
Franziska Lang
No information about this author
et al.
Frontiers in Immunology,
Journal Year:
2024,
Volume and Issue:
15
Published: May 29, 2024
Cancer
immunotherapy
has
witnessed
rapid
advancement
in
recent
years,
with
a
particular
focus
on
neoantigens
as
promising
targets
for
personalized
treatments.
The
convergence
of
immunogenomics,
bioinformatics,
and
artificial
intelligence
(AI)
propelled
the
development
innovative
neoantigen
discovery
tools
pipelines.
These
have
revolutionized
our
ability
to
identify
tumor-specific
antigens,
providing
foundation
precision
cancer
immunotherapy.
AI-driven
algorithms
can
process
extensive
amounts
data,
patterns,
make
predictions
that
were
once
challenging
achieve.
However,
integration
AI
comes
its
own
set
challenges,
leaving
space
further
research.
With
computational
approaches,
this
article
we
explored
current
landscape
prediction,
fundamental
concepts
behind,
challenges
their
potential
solutions
comprehensive
overview
rapidly
evolving
field.
Language: Английский
Cinobufagin: Unveiling the hidden bufadienolide’s promise in combating alimentary canal cancer development and progression – a comprehensive review
Naunyn-Schmiedeberg s Archives of Pharmacology,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Feb. 20, 2025
Language: Английский
GENERATING RESEARCH HYPOTHESES TO OVERCOME KEY CHALLENGES IN THE EARLY DIAGNOSIS OF COLORECTAL CANCER - FUTURE APPLICATION OF AI
Lan Yao,
No information about this author
Heliang Yin,
No information about this author
Chengyuan Yang
No information about this author
et al.
Cancer Letters,
Journal Year:
2025,
Volume and Issue:
unknown, P. 217632 - 217632
Published: March 1, 2025
Language: Английский
Development of an alkaliptosis-related lncRNA risk model and immunotherapy target analysis in lung adenocarcinoma
Frontiers in Genetics,
Journal Year:
2025,
Volume and Issue:
16
Published: April 8, 2025
Lung
cancer
has
the
highest
mortality
rate
among
all
cancers
worldwide.
Alkaliptosis
is
characterized
by
a
pH-dependent
form
of
regulated
cell
death.
In
this
study,
we
constructed
model
related
to
alkaliptosis-associated
long
non-coding
RNAs
(lncRNAs)
and
developed
prognosis-related
framework,
followed
identification
potential
therapeutic
drugs.
The
TCGA
database
was
utilized
obtain
RNA-seq-based
transcriptome
profiling
data,
clinical
information,
mutation
data.
We
conducted
multivariate
Cox
regression
analysis
identify
alkaliptosis-related
lncRNAs.
Subsequently,
employed
training
group
construct
prognostic
testing
validate
model's
accuracy.
Calibration
curves
were
generated
illustrate
discrepancies
between
predicted
observed
outcomes.
Principal
Component
Analysis
(PCA)
performed
investigate
distribution
LUAD
patients
across
high-
low-risk
groups.
Additionally,
Gene
Ontology
(GO)
Set
Enrichment
(GSEA)
conducted.
Immune
infiltration
Tumor
Mutational
Burden
(TMB)
analyses
carried
out
using
CIBERSORT
maftools
algorithms.
Finally,
"oncoPredict"
package
predict
immunotherapy
sensitivity
further
forecast
anti-tumor
immune
qPCR
used
for
experimental
verification.
identified
155
lncRNAs
determined
that
5
these
serve
as
independent
factors.
progression-free
survival
(PFS)
overall
(OS)
rates
significantly
higher
than
those
high-risk
group.
risk
signature
functions
factor
other
variables.
Different
stages
(I-II
III-IV)
effectively
lung
adenocarcinoma
(LUAD)
patients,
can
reliably
signatures.
GSEA
revealed
processes
chromosome
segregation
response
activation
enriched
in
both
exhibited
lower
fraction
plasma
cells
proportion
activated
CD4
memory
T
cells.
OS
low
TMB
compared
high
Furthermore,
drug
greater
These
may
biomarkers
treating
patients.
summary,
construction
an
lncRNA
provides
new
insights
into
diagnosis
treatment
advanced
Language: Английский
Bidirectional Mendelian randomization and potential mechanistic insights into the causal relationship between gut microbiota and malignant mesothelioma
Yinjie Zhou,
No information about this author
Huangkai Zhu,
No information about this author
Long Zhao
No information about this author
et al.
Medicine,
Journal Year:
2025,
Volume and Issue:
104(17), P. e42245 - e42245
Published: April 25, 2025
Malignant
mesothelioma
(MM)
is
a
rare
but
aggressive
cancer
originating
from
mesothelial
cells,
which
presents
significant
challenges
to
patients’
physical
and
psychological
well-being.
The
gut–lung
axis
underscores
the
connection
between
gut
microbiota
respiratory
diseases,
with
emerging
evidence
suggesting
strong
association
development
of
MM.
In
this
study,
we
conducted
two-sample
Mendelian
randomization
(MR)
analysis
investigate
potential
causal
relationship
MM,
while
also
exploring
underlying
mechanisms
through
bioinformatics
approaches.
Gut
summary
data
were
obtained
MiBioGen
consortium,
MM
sourced
FinnGen
R11
dataset.
Causality
was
examined
using
inverse
variance
weighted
method
as
primary
analysis.
Additional
methods,
including
median,
simple
mode,
MR-Egger,
employed.
robustness
findings
validated
sensitivity
analyses,
reverse
causality
considered
further
strengthen
MR
results.
Moreover,
analyses
on
genetic
loci
associated
both
explore
mechanisms.
Our
study
suggests
that
genetically
predicted
increases
in
class.Bacilli
,
family.Rikenellaceae
genus.Clostridium
innocuum
group
order.Lactobacillales
suggestively
higher
risk
whereas
genus.Ruminococcaceae
UCG004
genus.Flavonifractor
phylum.Firmicutes
genus.Anaerofilum
sensu
stricto
1
genus.Lactobacillus
appeared
confer
protective
effects.
Bioinformatics
indicated
differentially
expressed
genes
near
might
affect
by
modulating
pathways
tumor
microenvironment.
results
point
predisposition
linking
Further
experimental
validation
crucial
confirm
these
candidate
microbes,
establish
causality,
elucidate
Language: Английский
Evaluating Tumour Mutational Burden as a Key Biomarker in Personalized Cancer Immunotherapy: A Pan-Cancer Systematic Review
Anca Zgură,
No information about this author
Stefania Chipuc,
No information about this author
Nicolae Bacalbașa
No information about this author
et al.
Cancers,
Journal Year:
2025,
Volume and Issue:
17(3), P. 480 - 480
Published: Feb. 1, 2025
Background:
Tumour
mutational
burden
(TMB)
is
an
emerging
biomarker
for
predicting
the
efficacy
of
immune
checkpoint
inhibitors
(ICIs)
in
cancer
therapy.
While
its
role
well
established
lung
and
melanoma,
predictive
value
breast
prostate
cancers
remains
unclear.
Objective:
This
systematic
review
aimed
to
assess
TMB
ICI
therapy
across
four
major
types—lung,
breast,
prostate—and
explore
factors
contributing
variability
effectiveness
as
a
biomarker.
Methods:
A
search
literature
were
conducted
accordance
with
PRISMA
guidelines.
Studies
examining
relationship
between
levels
clinical
outcomes
following
specified
analyzed.
The
data
synthesized
evaluate
TMB’s
identify
gaps
current
research.
Results:
High
consistently
correlated
improved
confirming
utility
these
cancers.
Conversely,
findings
inconclusive.
suggests
need
complementary
biomarkers
or
refined
criteria
enhance
reliability.
Methodological
inconsistencies
evaluation
also
noted
significant
limitation.
Conclusions:
serves
robust
response
but
demonstrates
limited
Future
research
should
prioritize
standardizing
assessment
protocols
investigating
additional
improve
treatment
personalization
types.
Language: Английский
Exosome-based immunotherapy in hepatocellular carcinoma
Clinical and Experimental Medicine,
Journal Year:
2025,
Volume and Issue:
25(1)
Published: April 24, 2025
Language: Английский
Biologic activity and treatment resistance to gastrointestinal cancer: the role of circular RNA in autophagy regulation
Bo Zhang,
No information about this author
Zhe Li,
No information about this author
Guoliang Ye
No information about this author
et al.
Frontiers in Oncology,
Journal Year:
2024,
Volume and Issue:
14
Published: Aug. 30, 2024
Circular
RNAs
(circRNAs)
lack
the
5'-end
methylated
guanine
cap
structure
and
3'
polyadenylate
tail
structure,
classifying
it
as
a
non-coding
RNA.
With
extensive
investigation
of
circRNA,
its
role
in
regulating
cell
death
has
garnered
significant
attention
recent
years,
establishing
recognized
participant
cancer's
biological
processes.
Autophagy,
an
essential
pathway
programmed
(PCD),
involves
formation
autophagosomes
using
lysosomes
to
degrade
cellular
contents
under
regulation
various
autophagy-related
(ATG)
genes.
Numerous
studies
have
demonstrated
that
circRNA
can
modulate
activity
cancer
cells
by
influencing
autophagy
pathway,
exhibiting
dualistic
suppressing
or
promoting
carcinogenesis.
In
this
review,
we
comprehensively
analyze
how
impacts
progression
gastrointestinal
(GIC).
Additionally,
discuss
drug
resistance
phenomena
associated
with
GIC.
This
review
offers
valuable
insights
into
exploring
potential
targets
for
prognosis
treatment
strategies
related
Language: Английский
Basement membranes in lung metastasis growth and progression
Irene Torre-Cea,
No information about this author
Patricia Berlana-Galán,
No information about this author
Elena Guerra-Paes
No information about this author
et al.
Matrix Biology,
Journal Year:
2024,
Volume and Issue:
unknown
Published: Dec. 1, 2024
The
lung
is
a
highly
vascularized
tissue
that
often
harbors
metastases
from
various
extrathoracic
malignancies.
Lung
parenchyma
consists
of
complex
network
alveolar
epithelial
cells
and
microvessels,
structured
within
an
architecture
defined
by
basement
membranes.
Consequently,
understanding
the
role
extracellular
matrix
(ECM)
in
growth
essential
to
uncover
biology
this
pathology
developing
targeted
therapies.
These
membranes
play
critical
progression
metastases,
influencing
multiple
stages
metastatic
cascade,
acquisition
aggressive
phenotype
intravasation,
extravasation
colonization
secondary
sites.
This
review
examines
biological
composition
membranes,
focusing
on
their
core
components-collagens,
fibronectin,
laminin-and
specific
roles
cancer
progression.
Additionally,
we
discuss
function
integrins
as
primary
mediators
cell
adhesion
signaling
between
tumor
cells,
matrix,
well
implications
for
lung.
We
also
explore
vascular
co-option
(VCO)
form
resistance
linked
vasculature.
Finally,
covers
current
clinical
therapies
targeting
adhesion,
remodeling,
development,
aiming
improve
precision
effectiveness
treatments
against
metastases.
Language: Английский