NORMAN guidance on suspect and non-target screening in environmental monitoring DOI Creative Commons
Juliane Hollender, Emma Schymanski, Lutz Ahrens

et al.

Environmental Sciences Europe, Journal Year: 2023, Volume and Issue: 35(1)

Published: Sept. 4, 2023

Abstract Increasing production and use of chemicals awareness their impact on ecosystems humans has led to large interest for broadening the knowledge chemical status environment human health by suspect non-target screening (NTS). To facilitate effective implementation NTS in scientific, commercial governmental laboratories, as well acceptance managers, regulators risk assessors, more harmonisation is required. address this, NORMAN Association members involved activities have prepared this guidance document, based current state knowledge. The document intended provide performing high quality studies data interpretation while increasing promise but also pitfalls challenges associated with these techniques. Guidance provided all steps; from sampling sample preparation analysis chromatography (liquid gas—LC GC) coupled via various ionisation techniques high-resolution tandem mass spectrometry (HRMS/MS), through evaluation reporting context NTS. Although most experience within network still involves water polar compounds using LC–HRMS/MS, other matrices (sediment, soil, biota, dust, air) instrumentation (GC, ion mobility) are covered, reflecting rapid development extension field. Due ongoing developments, different questions addressed manifold use, feel that no standard operation process can be at stage. However, appropriate analytical methods, processing databases commonly compiled workflows introduced, limitations discussed recommendations cases provided. Proper assurance, quantification without reference standards results clear confidence identification assignment complete together a glossary definitions. community greatly supports sharing experiences open science hopes guideline effort.

Language: Английский

The exposome and health: Where chemistry meets biology DOI Open Access
Roel Vermeulen, Emma Schymanski,

Albert-László Barabási

et al.

Science, Journal Year: 2020, Volume and Issue: 367(6476), P. 392 - 396

Published: Jan. 24, 2020

Despite extensive evidence showing that exposure to specific chemicals can lead disease, current research approaches and regulatory policies fail address the chemical complexity of our world. To safeguard future generations from increasing number polluting environment, a systematic agnostic approach is needed. The “exposome” concept strives capture diversity range exposures synthetic chemicals, dietary constituents, psychosocial stressors, physical factors, as well their corresponding biological responses. Technological advances such high-resolution mass spectrometry network science have allowed us take first steps toward comprehensive assessment exposome. Given increased recognition dominant role nongenetic factors play in an effort characterize exposome at scale comparable human genome warranted.

Language: Английский

Citations

747

Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra DOI
Kai Dührkop, Louis‐Félix Nothias, Markus Fleischauer

et al.

Nature Biotechnology, Journal Year: 2020, Volume and Issue: 39(4), P. 462 - 471

Published: Nov. 23, 2020

Language: Английский

Citations

571

A Cardiovascular Disease-Linked Gut Microbial Metabolite Acts via Adrenergic Receptors DOI Creative Commons
Ina Nemet, Prasenjit Prasad Saha, Nilaksh Gupta

et al.

Cell, Journal Year: 2020, Volume and Issue: 180(5), P. 862 - 877.e22

Published: March 1, 2020

Language: Английский

Citations

559

Reproducible molecular networking of untargeted mass spectrometry data using GNPS DOI

Allegra T. Aron,

Emily C. Gentry, Kerry L. McPhail

et al.

Nature Protocols, Journal Year: 2020, Volume and Issue: 15(6), P. 1954 - 1991

Published: May 13, 2020

Language: Английский

Citations

511

Challenges, progress and promises of metabolite annotation for LC–MS-based metabolomics DOI
Romanas Chaleckis, Isabel Meister, Pei Zhang

et al.

Current Opinion in Biotechnology, Journal Year: 2018, Volume and Issue: 55, P. 44 - 50

Published: Aug. 20, 2018

Language: Английский

Citations

313

A metabolomics pipeline for the mechanistic interrogation of the gut microbiome DOI
Shuo Han,

Will Van Treuren,

Curt R. Fischer

et al.

Nature, Journal Year: 2021, Volume and Issue: 595(7867), P. 415 - 420

Published: July 14, 2021

Language: Английский

Citations

303

Recent advances in the application of metabolomics for food safety control and food quality analyses DOI
Shubo Li, Yufeng Tian,

Pingyingzi Jiang

et al.

Critical Reviews in Food Science and Nutrition, Journal Year: 2020, Volume and Issue: 61(9), P. 1448 - 1469

Published: May 22, 2020

As one of the omics fields, metabolomics has unique advantages in facilitating understanding physiological and pathological activities biology, physiology, pathology, food science. In this review, based on developments analytical chemistry tools, cheminformatics, bioinformatics methods, we highlight current applications safety, authenticity quality, traceability. Additionally, combined use with other techniques for "foodomics" is comprehensively described. Finally, latest advances, practical challenges limitations, requirements related to application are critically discussed, providing new insight into analysis.

Language: Английский

Citations

285

Machine Learning Applications for Mass Spectrometry-Based Metabolomics DOI Creative Commons
Ulf W. Liebal, An Phan, Malvika Sudhakar

et al.

Metabolites, Journal Year: 2020, Volume and Issue: 10(6), P. 243 - 243

Published: June 13, 2020

The metabolome of an organism depends on environmental factors and intracellular regulation provides information about the physiological conditions. Metabolomics helps to understand disease progression in clinical settings or estimate metabolite overproduction for metabolic engineering. most popular analytical metabolomics platform is mass spectrometry (MS). However, MS data analysis complicated, since metabolites interact nonlinearly, structures themselves are complex. Machine learning methods have become immensely statistical due inherent nonlinear representation ability process large heterogeneous rapidly. In this review, we address recent developments using machine processing spectra show how generates new biological insights. particular, supervised has great potential research because supply quantitative predictions. We review here commonly used tools, such as random forest, support vector machines, artificial neural networks, genetic algorithms. During steps, help peak picking, normalization, missing imputation. For knowledge-driven analysis, contributes biomarker detection, classification regression, biochemical pathway identification, carbon flux determination. Of important relevance combination different omics identify contributions various regulatory levels. Our overview publications also highlights that quality determines quality, but adds challenge choosing right model data. applied MS-based ease can decisions, guide engineering, stimulate fundamental discoveries.

Language: Английский

Citations

263

Collision cross section compendium to annotate and predict multi-omic compound identities DOI Creative Commons
Jaqueline A. Picache, Bailey S. Rose, A. Baliński

et al.

Chemical Science, Journal Year: 2018, Volume and Issue: 10(4), P. 983 - 993

Published: Nov. 27, 2018

The Unified Compendium is an online interactive tool that utilizes ion mobility collision cross sections to annotate biochemical molecules.

Language: Английский

Citations

243

Accelerating Metabolite Identification in Natural Product Research: Toward an Ideal Combination of Liquid Chromatography–High-Resolution Tandem Mass Spectrometry and NMR Profiling, in Silico Databases, and Chemometrics DOI
Jean‐Luc Wolfender, Jean‐Marc Nuzillard, Justin J. J. van der Hooft

et al.

Analytical Chemistry, Journal Year: 2018, Volume and Issue: 91(1), P. 704 - 742

Published: Nov. 19, 2018

ADVERTISEMENT RETURN TO ISSUEPREVReviewNEXTAccelerating Metabolite Identification in Natural Product Research: Toward an Ideal Combination of Liquid Chromatography–High-Resolution Tandem Mass Spectrometry and NMR Profiling, Silico Databases, ChemometricsJean-Luc Wolfender*Jean-Luc WolfenderSchool Pharmaceutical Sciences, EPGL, University Geneva, Lausanne, CMU, 1 Rue Michel Servet, 1211 Geneva 4, Switzerland*E-mail: [email protected]. Phone: 41-22 379-3385.More by Jean-Luc WolfenderView Biographyhttp://orcid.org/0000-0002-0125-952X, Jean-Marc NuzillardJean-Marc NuzillardInstitut de Chimie Moléculaire Reims, UMR CNRS 7312, Université Reims Champagne Ardenne, 51687 Cedex 2, FranceMore NuzillardView Biographyhttp://orcid.org/0000-0002-5120-2556, Justin J. van der HooftJustin HooftBioinformatics Group, Wageningen University, 6708 PB, The NetherlandsMore HooftView Biographyhttp://orcid.org/0000-0002-9340-5511, Jean-Hugues RenaultJean-Hugues RenaultInstitut RenaultView Biography, Samuel BertrandSamuel BertrandGroupe Mer, Molécules, Santé-EA 2160, UFR des Sciences Pharmaceutiques et Biologiques, Nantes, 44035 FranceThalassOMICS Metabolomics Facility, Plateforme Corsaire, Biogenouest, BertrandView Biographyhttp://orcid.org/0000-0002-5934-7012Cite this: Anal. Chem. 2019, 91, 1, 704–742Publication Date (Web):November 19, 2018Publication History Published online19 November 2018Published inissue 2 January 2019https://pubs.acs.org/doi/10.1021/acs.analchem.8b05112https://doi.org/10.1021/acs.analchem.8b05112review-articleACS PublicationsCopyright © 2018 American Chemical SocietyRequest reuse permissionsArticle Views7046Altmetric-Citations159LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum full text article downloads since 2008 (both PDF HTML) across all institutions individuals. These metrics regularly updated to reflect usage leading up last few days.Citations number other articles citing this article, calculated Crossref daily. Find more information about citation counts.The Altmetric Attention Score is a quantitative measure attention that research has received online. Clicking on donut icon will load page at altmetric.com with additional details score social media presence for given article. how calculated. Share Add toView InAdd Full Text ReferenceAdd Description ExportRISCitationCitation abstractCitation referencesMore Options onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose SUBJECTS:Mass spectrometry,Metabolism,Metabolomics,Molecules,Nuclear magnetic resonance spectroscopy Get e-Alerts

Language: Английский

Citations

208