Dna Barcodes, a Powerful Tool for a Rapid Construction of a Baseline and Conservation of Aquatic Ecosystems in Sian Ka’an Reserve (Quintana Roo State, Mexico) And Adjacent Areas DOI Open Access
Martha Valdez Moreno,

Manuel Mendoza Carranza,

Eduardo Rendón-Hernández

et al.

Published: June 22, 2021

This study is focused to the aquatic environments of Sian Ka’an reserve, a World Heritage Site. We applied protocols recently developed for rapid assessment most animal taxa inhabiting any freshwater system, by using light traps, and DNA barcodes, represented mitochondrial gene Cytochrome Oxidase I (COI). barcoded 1037 specimens mites, crustaceans, insects, fish larvae from 13 close or inside with success rate 99.8%. In total, 167 Molecular Operational Taxonomic Units (MOTU’s) were detected. From them we identified 43 species. All others remain as MOTU. For analyzing adult communities, non-invasive method environmental (eDNA), sequences obtained Barcode Life Database (BOLD). found 25 species, other terrestrial vertebrates this region. No alien species was found. After comparison MOTU’s all systems, that each water body unique respect communities observed. The reference library presented here represents first step future programs detect change in these ecosystems, including invasive improve knowledge zooplankton, because are possibly new science.

Language: Английский

Brazilian Flora 2020: Leveraging the power of a collaborative scientific network DOI Creative Commons
Janaína Gomes‐da‐Silva, Fabiana Ranzato Filardi, Maria Regina de Vasconcellos Barbosa

et al.

Taxon, Journal Year: 2021, Volume and Issue: 71(1), P. 178 - 198

Published: Dec. 17, 2021

Abstract The shortage of reliable primary taxonomic data limits the description biological taxa and understanding biodiversity patterns processes, complicating biogeographical, ecological, evolutionary studies. This deficit creates a significant impediment to research conservation planning. crisis are widely recognized, highlighting urgent need for data. Over past decade, numerous countries worldwide have devoted considerable effort Target 1 Global Strategy Plant Conservation (GSPC), which called preparation working list all known plant species by 2010 an online world Flora 2020. Brazil is megadiverse country, home more world's than any other country. Despite that, Brasiliensis , concluded in 1906, was last comprehensive treatment Brazilian flora. lack accurate estimates number algae, fungi, plants occurring contributes prevailing delays progress towards GSPC targets. 12 years, legion taxonomists motivated meet GSPC, worked together gather integrate knowledge on algal, plant, fungal diversity Brazil. Overall, team about 980 joined efforts highly collaborative project that used cybertaxonomy prepare updated Brazil, showing power scientific collaboration reach ambitious goals. paper presents overview 2020 provides spatial updates found one most biodiverse countries. We further identify collection gaps summarize future goals extend beyond Our results show 46,975 native plants, 19,669 endemic compiled date suggests Atlantic Rainforest might be diverse domain groups except gymnosperms, Amazon. However, still unequally distributed, with Cerrado being intensively sampled studied biomes In times “scientific reductionism”, botanical mycological sciences suffering pervasive depreciation recent decades, first significantly enhanced quality quantity available from also made information freely online, providing firm foundation management, conservation, sustainable use funga

Language: Английский

Citations

141

The latitudinal taxonomy gradient DOI
Benjamin G. Freeman, Matthew W. Pennell

Trends in Ecology & Evolution, Journal Year: 2021, Volume and Issue: 36(9), P. 778 - 786

Published: May 31, 2021

Language: Английский

Citations

67

Tracking hidden dimensions of plant biogeography from herbaria DOI Creative Commons
Barnabas H. Daru

New Phytologist, Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 14, 2025

Plants are diverse, but investigating their ecology and evolution in nature across geographic temporal scales to predict how species will respond global change is challenging. With breadth, herbarium data provide physical evidence of the existence a place time. The remarkable size collections along with growing digitization efforts around world possibility extracting functional traits from preserved plant specimens makes them invaluable resources for advancing our understanding changing distributions over time, biogeography, conserving communities. Here, I synthesize core aspects biogeography that can be gleaned herbaria distributions, attributes (functional biogeography), conservation globe. advocate collaborative, multisite, multispecies research harness full potential these while addressing inherent challenges using macroecological investigations. Ultimately, present untapped opportunities enable predictions species' responses inform effective planning.

Language: Английский

Citations

1

Floristics in Mexico today: insights into a better understanding of biodiversity in a megadiverse country DOI Creative Commons
José Luís Villaseñor, Jorge A. Meave

Botanical Sciences, Journal Year: 2022, Volume and Issue: 100(Special), P. S14 - S33

Published: Aug. 17, 2022

Advancing our current knowledge on floristic richness in Mexico requires access to different sources, including published and unpublished inventories, fascicles of ongoing projects, publicly available online databases. The evaluation these sources reveals how extensive the information country’s diversity is, its heterogeneity, lack protocols standards for proper organization, analysis, synthesis. This review addresses extent which provide basis achieve long-awaited goal completing Flora Mexico, traditional outputs taxonomic work (Floras checklists) are useful other fields biological research. We identified major gaps, as well actual potential uses by scholars public. Although all reviewed focus a better Mexican plant species, each one has own approach, geographic coverage, objectives, producing incompatibilities that hamper their integration rapid efficient synthesis analysis. Such should offer an updated scenario geographical setting foundations organized strategies aimed complete short term. Floristic country continues advance actively, indicated growing number inventories buildup shows much we know today about Mexico’s vascular highlights relevance this study nature, particularly those related component.

Language: Английский

Citations

18

Improving species delimitation for effective conservation: a case study in the endemic maple‐leaf oak (Quercus acerifolia) DOI
Yingtong Wu, Andrew L. Hipp,

Gregory Fargo

et al.

New Phytologist, Journal Year: 2023, Volume and Issue: 238(3), P. 1278 - 1293

Published: Jan. 28, 2023

Summary Species delimitation is challenging in lineages that exhibit both high plasticity and introgression. This challenge can be compounded by collection biases, which may downweight specimens morphologically intermediate between traditional species. Additionally, mismatch named species observable phenotypes compromise conservation. We studied the boundaries of Quercus acerifolia , a tree endemic to Arkansas, U.S. performed morphometric analyses leaves acorns from 527 field 138 herbarium samples Q. its close relatives, shumardii rubra . employed two novel approaches: sampling ex situ collections detect phenotypic caused environmental variation comparing random with historical identify biases might undermine delimitation. To provide genetic evidence, we also molecular on genome‐wide SNPs. shows distinctive morphological, ecological, genomic characteristics, rejecting hypothesis variant found mismatches taxonomy clusters. detected underrepresentation morphological intermediates collections, bias discovery recognition. Rare conservation requires considering addressing taxonomic problems related plasticity, clusters, biases.

Language: Английский

Citations

11

Peces del río Garagoa, cuenca alta del Orinoco, Boyacá, Colombia: una clave taxonómica para su identificación DOI Creative Commons
Laura Melissa Barrios-Alonso, Daniela Alejandra Becerra Infante, Andrés Felipe Galán-Echeverri

et al.

Actualidades Biológicas, Journal Year: 2025, Volume and Issue: 74(122)

Published: Jan. 1, 2025

Se presenta un listado comentado de la riqueza peces registrada en cuenca del río Garagoa, compuesto por 41 especies, las cuales 24 fueron colectadas este estudio y restantes pertenecientes a estudios anteriores. reportan nueve nuevos registros para cuenca, los dos son especies exóticas una ellas es producto posible intento introducción. A su vez, se incluye clave taxonómica identificación cuenca. Este trabajo complementa el inventario servirá como herramienta tomadores decisión respecto medidas conservación manejo, así control e invasoras. Los resultados podrán apoyar propuestas uso aprovechamiento diversidad peces, ejemplo, través proyectos ecoturismo.

Citations

0

Mobilisation of Data From Natural History Collections Can Increase the Quality and Coverage of Biodiversity Information DOI Creative Commons
Bryony Blades, Cristina Ronquillo, Joaquín Hortal

et al.

Ecology and Evolution, Journal Year: 2025, Volume and Issue: 15(4)

Published: April 1, 2025

ABSTRACT The surge of biodiversity data availability in recent decades has allowed researchers to ask questions on previously unthinkable scales, but knowledge gaps still remain. In this study, we aim quantify potential gains insect the Global Biodiversity Information Facility (GBIF) through further digitisation natural history collections, assess what degree would fill biases spatial and environmental record coverage, deepen understanding bias with regard climate rarity. Using mainland Afrotropical records for Catharsius Hope, 1837 (Coleoptera: Scarabaeidae), compared inventory completeness GBIF a dataset which combined these from taxonomic revision. We analysed how improved reduced regional distribution occurrence using an approach that identifies well‐surveyed units 100 × 100km as well emerging techniques classify rarity climates. found number cells could be calculated, coverage types by ‘well‐sampled’ cells, increased threefold when set set. Improvements sampling Central Western Africa were particularly striking, rare climates was similarly improved, not single well‐sampled cell alone occurred rarest types. These findings support existing literature suggests are pervasive, especially insects tropics, so, is yet ready serve standalone source all taxa. However, show collections hold necessary information many gaps, their should priority.

Language: Английский

Citations

0

A review of Neotropical Burseraceae DOI
Douglas C. Daly, Ricardo de Oliveira Perdiz, Paul V. A. Fine

et al.

Revista Brasileira de Botânica, Journal Year: 2022, Volume and Issue: 45(1), P. 103 - 137

Published: Jan. 31, 2022

Language: Английский

Citations

14

Target sequence capture of Barnadesioideae (Compositae) demonstrates the utility of low coverage loci in phylogenomic analyses DOI Creative Commons
Paola de Lima Ferreira, Romina Batista, Tobias Andermann

et al.

Molecular Phylogenetics and Evolution, Journal Year: 2022, Volume and Issue: 169, P. 107432 - 107432

Published: Feb. 4, 2022

Target sequence capture has emerged as a powerful method to hundreds or thousands of genomic regions in cost- and time-efficient approach. In most cases, however, targeted lack full information for certain samples, due taxonomic, laboratory, stochastic factors. Loci lacking molecular data large number samples are commonly excluded from downstream analyses, even though they may still contain valuable information. On the other hand, including data-poor loci bias phylogenetic analyses. Here we use target dataset an ecologically taxonomically diverse group spiny sunflowers (Asteraceae, Compositae: Barnadesioideae) test how inclusion exclusion such affects inference. We investigate sensitivity concatenation coalescent approaches missing with matrices varying taxonomic completeness by filtering different proportions prior analysis. find that affect both topology branch support resulting phylogenies. The matrix containing all yielded overall highest node values, independently amount nucleotides. These results provide empirical earlier suggestions based on single genes simulations taxa high amounts should not be readily dismissed can essential phylogenomic reconstruction.

Language: Английский

Citations

14

Workshop Report: Supporting inclusive and sustainable collections-based research infrastructure for systematics (SISRIS) DOI Creative Commons
Andrea Weeks,

Elizabeth Collins,

Twanelle Majors

et al.

Research Ideas and Outcomes, Journal Year: 2024, Volume and Issue: 10

Published: May 20, 2024

We created and delivered a workshop symposium series for biologists at all career stages focused on the skills practices needed to sustain natural history specimen attribution citation. The name of series, SISRIS, reflected our ultimate goal effecting community-level change by sharing that can support inclusive sustainable (collections-based) research infrastructure systematics. report here rationale its learning objectives participants results, including assessment outcomes from three iterations held in 2023. SISRIS workshops symposia were person annual meeting Association Southeastern Biologists Winston-Salem, North Carolina Botany 2023 Boise, Idaho. A stand-alone was online later accommodate individuals who unable travel in-person events.

Language: Английский

Citations

2