Whole-genome sequence of Pseudomonas sp. strain HOU2 isolated from dangshen (Codonopsis javanica) roots DOI Creative Commons

Van Hong Thi Dao,

Loan Nguyen,

Khanh Phuong

et al.

BMC Genomic Data, Journal Year: 2024, Volume and Issue: 25(1)

Published: Dec. 26, 2024

This study aims to generate a de novo complete whole-genome assembly of Pseudomonas sp. strain HOU2, which is an endophytic bacterium isolated from dangshen roots that shows improve the growth in vitro plants. Further investigation whole genome HOU2 will help identify potential genes or pathways could be involved plant growth-promoting effects on plants, providing valuable information for future applications. The genomic DNA was sequenced using Oxford Nanopore's PromethION sequencer with R10.4.1 flow cell (Table 1, Data file 1). conducted Flye version 2.9, resulting single circular chromosome 6,047,544 bp mean coverage 488 2). annotation genes, proteins, and features were performed by RAST server (Rapid Annotation Subsystem Technology) ( https://rast.nmpdr.org/ ) 3, 4, 5) [6, 7]. determined most similar koreensis Type Strain Genome Server https://tygs.dsmz.de/ , v391) [8].

Language: Английский

Whole-genome sequence of Micrococcus sp. strain HOU01 isolated from potato root DOI Open Access

Van Hong Thi Dao,

Loan Nguyen,

Phuong Minh Thi Tran

et al.

Microbiology Resource Announcements, Journal Year: 2024, Volume and Issue: 13(7)

Published: June 25, 2024

Endophytes play important roles in potato production. The whole genome of endophytic

Language: Английский

Citations

0
Cultivation of Antioxidant-Producing Endophytic Fungus in Rhizophora apiculata Mangrove Plants DOI Open Access
Anthoni Agustien, Putra Santoso,

Siti Zaharani Zalamah

et al.

OnLine Journal of Biological Sciences, Journal Year: 2024, Volume and Issue: 24(4), P. 794 - 801

Published: April 1, 2024

West Sumatra is known as one of the largest areas mangrove forests in Indonesia, dominated by Rhizophora. Therefore, there will be huge opportunities to discover new types or strains endophytes and antioxidant compounds, which play an important role protecting cells caused free radicals, preventing oxidation, human body from ROS. This study aims determine optimal pH temperature for growth activity endophytic fungal isolates plants Rhizophora apiculata using descriptive design with DPPH (2,2-diphenyl-1-picrylhydrazyl) method determination quantitative analysis IC50 value. The result showed that optimum isolate EUA-111 was 5.0, EUA-112 5.5 EUA-130 6.0. In addition, all 31°C. affect increase production R.

Language: Английский

Citations

0
Whole-genome sequence of Pseudomonas sp. strain HOU2 isolated from dangshen (Codonopsis javanica) roots DOI Creative Commons

Van Hong Thi Dao,

Loan Nguyen,

Khanh Phuong

et al.

BMC Genomic Data, Journal Year: 2024, Volume and Issue: 25(1)

Published: Dec. 26, 2024

This study aims to generate a de novo complete whole-genome assembly of Pseudomonas sp. strain HOU2, which is an endophytic bacterium isolated from dangshen roots that shows improve the growth in vitro plants. Further investigation whole genome HOU2 will help identify potential genes or pathways could be involved plant growth-promoting effects on plants, providing valuable information for future applications. The genomic DNA was sequenced using Oxford Nanopore's PromethION sequencer with R10.4.1 flow cell (Table 1, Data file 1). conducted Flye version 2.9, resulting single circular chromosome 6,047,544 bp mean coverage 488 2). annotation genes, proteins, and features were performed by RAST server (Rapid Annotation Subsystem Technology) ( https://rast.nmpdr.org/ ) 3, 4, 5) [6, 7]. determined most similar koreensis Type Strain Genome Server https://tygs.dsmz.de/ , v391) [8].

Language: Английский

Citations

0