Genome Biology and Evolution,
Journal Year:
2023,
Volume and Issue:
15(4)
Published: Feb. 28, 2023
Abstract
Severe
acute
respiratory
syndrome
coronavirus
2
(SARS-CoV-2)
continues
to
spread
globally,
and
scientists
around
the
world
are
currently
studying
virus
intensively
in
order
fight
against
on-going
pandemic
of
virus.
To
do
so,
SARS-CoV-2
is
typically
grown
lab
generate
viral
stocks
for
various
kinds
experimental
investigations.
However,
accumulating
evidence
suggests
that
such
viruses
often
undergo
cell
culture
adaptation.
Here,
we
systematically
explored
adaptation
two
variants,
namely
B.1.36.16
variant
AY.30
variant,
a
sub
lineage
B.1.617.2
(Delta)
propagated
three
different
lines,
including
Vero
E6,
E6/TMPRSS2,
Calu-3
cells.
Our
analyses
detected
numerous
potential
changes
scattering
across
entire
genome,
many
which
could
be
found
naturally
circulating
isolates.
Notable
ones
included
mutations
spike
glycoprotein's
multibasic
cleavage
site,
Omicron-defining
H655Y
mutation
on
glycoprotein,
as
well
nucleocapsid
protein's
linker
region,
all
were
E6-specific.
also
identified
deletion
non-structural
protein
1
membrane
glycoprotein
Calu-3-specific
changes.
S848C
3,
located
papain-like
protease
domain,
was
change,
lines.
results
highlight
high
adaptability,
emphasize
need
deep-sequence
cultured
samples
when
used
intricate
sensitive
biological
experiments,
illustrate
power
evolutionary
study
shedding
lights
landscape.
npj Vaccines,
Journal Year:
2021,
Volume and Issue:
6(1)
Published: June 17, 2021
Abstract
An
array
of
SARS-CoV-2
virus
variants
have
been
isolated,
propagated
and
used
in
vitro
assays,
vivo
animal
studies
human
clinical
trials.
Observations
working
stocks
suggest
that
sequential
propagation
Vero
cells
leads
to
critical
changes
the
region
furin
cleavage
site,
which
significantly
reduce
value
stock
for
research
studies.
Serially
propagating
E6
rapid
increases
genetic
while
other
cell
lines
(e.g.
Vero/hSLAM)
appears
mitigate
this
risk
thereby
improving
overall
stability
stocks.
From
these
observations,
investigators
are
urged
monitor
carefully
when
cells.
Transboundary and Emerging Diseases,
Journal Year:
2022,
Volume and Issue:
69(5)
Published: March 27, 2022
A
novel
swine
enteric
alphacoronavirus,
acute
diarrhoea
syndrome
coronavirus
(SADS-CoV),
related
to
Rhinolophus
bat
CoV
HKU2
in
the
subgenus
Rhinacovirus
emerged
southern
China
2017,
causing
newborn
piglets,
and
critical
questions
remain
about
pathogenicity,
cross-species
transmission
potential
animal
reservoirs.
Our
laboratory's
previous
research
has
shown
that
SADS-CoV
can
replicate
various
cell
types
from
different
species,
including
chickens.
Here,
we
systematically
explore
susceptibility
of
chickens
a
cell-adapted
strain
both
vitro
vivo.
First,
evidence
replication
primary
chicken
cells,
cytopathic
effects,
immunofluorescence
staining,
growth
curves
structural
protein
expression,
was
proven.
Furthermore,
observed
replicated
embryos
without
gross
lesions
experimental
infection
chicks
resulted
mild
respiratory
symptoms.
More
importantly,
shedding
viral
distribution
lungs,
spleens,
small
intestines
large
infected
were
confirmed
by
quantitative
reverse
transcription
polymerase
chain
reaction
immunohistochemistry.
The
genomic
sequence
original
pig
source
sample
2017
determined
have
nine
nucleotide
differences
compared
used;
among
these
three
nonsynonymous
mutations
spike
gene.
These
results
collectively
demonstrate
are
susceptible
infection,
suggesting
they
reservoir.
To
our
knowledge,
this
study
provides
first
which
mammalian
alphacoronavirus
is
able
infect
an
avian
species.
Animals,
Journal Year:
2022,
Volume and Issue:
12(3), P. 378 - 378
Published: Feb. 4, 2022
In
December
2019,
the
outbreak
of
severe
acute
respiratory
syndrome
coronavirus
2
(SARS-CoV-2)
was
reported
in
China
with
serious
impacts
on
global
health
and
economy
that
is
still
ongoing.
Although
interspecies
transmission
coronaviruses
common
well
documented,
each
has
a
narrowly
restricted
host
range.
Coronaviruses
utilize
different
receptors
to
mediate
membrane
fusion
replication
cell
cytoplasm.
The
interplay
between
receptor-binding
domain
(RBD)
their
coevolution
are
determinants
for
susceptibility.
recently
emerged
SARS-CoV-2
caused
disease
2019
(COVID-19)
pandemic
also
been
domestic
wild
animals,
raising
question
about
responsibility
animals
virus
evolution.
Additionally,
COVID-19
might
substantially
have
an
impact
animal
production
long
time.
present
review,
we
discussed
diversity
thus
receptors.
Moreover,
susceptibility
several
special
reference
current
evidence
were
highlighted.
Finally,
shed
light
urgent
demand
implementation
One
Health
concept
as
collaborative
approach
mitigate
threat
both
humans
animals.
iScience,
Journal Year:
2023,
Volume and Issue:
26(5), P. 106634 - 106634
Published: April 10, 2023
A
simple
and
robust
cell
culture
system
is
essential
for
generating
authentic
SARS-CoV-2
stocks
evaluation
of
viral
pathogenicity,
screening
antiviral
compounds,
preparation
inactivated
vaccines.
Evidence
suggests
that
Vero
E6,
a
line
commonly
used
in
the
field
to
grow
SARS-CoV-2,
does
not
support
efficient
propagation
new
variants
triggers
rapid
adaptation
virus.
We
generated
panel
17
human
lines
overexpressing
entry
factors
tested
their
ability
infection.
Two
lines,
Caco-2/AT
HuH-6/AT,
demonstrated
exceptional
susceptibility,
yielding
highly
concentrated
virus
stocks.
Notably,
these
were
more
sensitive
than
E6
cells
recovering
from
clinical
specimens.
Further,
provided
platform
producing
genetically
reliable
recombinant
through
reverse
genetics
system.
These
cellular
models
are
valuable
tool
study
its
continuously
emerging
variants.
Genome Biology and Evolution,
Journal Year:
2023,
Volume and Issue:
15(4)
Published: Feb. 28, 2023
Abstract
Severe
acute
respiratory
syndrome
coronavirus
2
(SARS-CoV-2)
continues
to
spread
globally,
and
scientists
around
the
world
are
currently
studying
virus
intensively
in
order
fight
against
on-going
pandemic
of
virus.
To
do
so,
SARS-CoV-2
is
typically
grown
lab
generate
viral
stocks
for
various
kinds
experimental
investigations.
However,
accumulating
evidence
suggests
that
such
viruses
often
undergo
cell
culture
adaptation.
Here,
we
systematically
explored
adaptation
two
variants,
namely
B.1.36.16
variant
AY.30
variant,
a
sub
lineage
B.1.617.2
(Delta)
propagated
three
different
lines,
including
Vero
E6,
E6/TMPRSS2,
Calu-3
cells.
Our
analyses
detected
numerous
potential
changes
scattering
across
entire
genome,
many
which
could
be
found
naturally
circulating
isolates.
Notable
ones
included
mutations
spike
glycoprotein's
multibasic
cleavage
site,
Omicron-defining
H655Y
mutation
on
glycoprotein,
as
well
nucleocapsid
protein's
linker
region,
all
were
E6-specific.
also
identified
deletion
non-structural
protein
1
membrane
glycoprotein
Calu-3-specific
changes.
S848C
3,
located
papain-like
protease
domain,
was
change,
lines.
results
highlight
high
adaptability,
emphasize
need
deep-sequence
cultured
samples
when
used
intricate
sensitive
biological
experiments,
illustrate
power
evolutionary
study
shedding
lights
landscape.