bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Aug. 26, 2024
ABSTRACT
RNA
molecules
are
localized
to
subcellular
regions
through
interactions
between
localization-regulatory
cis-elements
and
trans-acting
binding
proteins
(RBPs).
However,
the
identities
of
RNAs
whose
localization
is
regulated
by
a
specific
RBP
as
well
impacts
that
on
cell
function
have
generally
remained
unknown.
Here,
we
demonstrate
HNRNPA2B1
acts
keep
out
neuronal
projections.
Using
fractionation,
high-throughput
sequencing,
single
molecule
FISH,
find
hundreds
markedly
increased
abundance
in
neurites
knockout
cells.
These
often
encode
motor
enriched
for
known
sites
motifs
their
3′
UTRs.
The
speed
processivity
microtubule-based
transport
impaired
these
cells,
specifically
neurites.
point
mutations
increase
its
cytoplasmic
relative
wildtype
lead
stronger
suppression
mislocalization
defects
than
seen
with
HNRNPA2B1.
We
further
localizations
target
sensitive
perturbations
decay
machinery,
suggesting
it
HNRNPA2B1’s
role
regulating
stability
may
explain
observations.
findings
establish
negative
regulator
neurite
link
activities
them.
RNA,
Journal Year:
2022,
Volume and Issue:
29(2), P. 153 - 169
Published: Nov. 28, 2022
Neurons
and
glia
are
highly
polarized
cells,
whose
distal
cytoplasmic
functional
subdomains
require
specific
proteins.
have
axonal
dendritic
extensions
containing
synapses
plasticity
is
regulated
efficiently
by
mRNA
transport
localized
translation.
The
principles
behind
these
mechanisms
equally
attractive
for
explaining
rapid
local
regulation
of
glial
projections,
independent
their
cell
nucleus.
However,
in
contrast
to
neurons,
localization
has
received
little
experimental
attention
glia.
Nevertheless,
there
many
functionally
diverse
subtypes
extensive
networks
long
projections
with
likely
that
influence
neurons
synapses.
Moreover,
other
neuron-like
properties,
including
electrical
activity,
secretion
gliotransmitters
calcium
signaling,
influencing,
example,
synaptic
transmission,
axon
pruning.
Here,
we
review
previous
studies
concerning
transcripts
important
roles
influencing
plasticity,
focusing
on
a
few
cases
involving
We
discuss
variety
questions
about
translation
remain
be
addressed,
using
cutting-edge
tools
already
available
neurons.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: Oct. 28, 2022
Abstract
Midbodies
(MBs)
have
been
shown
to
function
during
telophase
as
a
recruiting
hub,
especially
for
ESCRT-III
complex
subunits,
regulate
the
abscission
step
of
cytokinesis.
However,
molecular
machinery
governing
specific
protein
targeting
and
activation
at
MB
remains
poorly
understood.
Until
recently,
it
was
thought
that
regulating
proteins,
such
accumulate
by
directly
or
indirectly
binding
resident
protein,
CEP55.
recent
studies
depletion
CEP55
does
not
fully
block
MB,
cells
in
knock-out
mice
divide
normally.
Additionally,
since
MBs
are
microtubule-rich,
proteinaceous
structures,
is
conceptually
hard
imagine
how
large
complexes,
complex,
can
successfully
diffuse
into
from
cytosol
rapid
highly
regulated
manner.
Here,
we
show
contain
mRNAs
these
MB-associated
be
locally
translated,
resulting
accumulation
abscission-regulating
proteins.
We
also
demonstrate
localized
translation
CHMP4B
required
its
site
3′
UTR-dependent
mRNA
successful
completion
Finally,
identify
regulatory
cis
-elements
within
RNAs
necessary
sufficient
trafficking
MB.
Based
on
all
this
data,
propose
novel
method
cytokinesis
selective
mRNAs.
The Journal of Cell Biology,
Journal Year:
2024,
Volume and Issue:
223(10)
Published: July 22, 2024
The
polarization
of
cells
often
involves
the
transport
specific
mRNAs
and
their
localized
translation
in
distal
projections.
Neurons
glia
are
both
known
to
contain
long
cytoplasmic
processes,
while
transcripts
have
only
been
studied
extensively
neurons,
not
glia,
especially
intact
nervous
systems.
Here,
we
predict
1,740
Drosophila
glial
by
extrapolating
from
our
meta-analysis
seven
existing
studies
characterizing
transcriptomes
translatomes
synaptically
associated
mammalian
glia.
We
demonstrate
that
localization
projections
strongly
predicts
high-confidence
homologs
larval
motor
neuron–associated
highly
statistically
enriched
for
genes
with
neurological
diseases.
further
show
some
these
specifically
required
structural
plasticity
at
nearby
neuromuscular
junction
synapses.
conclude
peripheral
mRNA
is
a
common
conserved
phenomenon
propose
it
likely
be
functionally
important
disease.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Aug. 19, 2024
Abstract
In
neuronal
cells,
the
regulation
of
RNA
is
crucial
for
spatiotemporal
control
gene
expression,
but
how
correct
localization,
levels,
and
function
synaptic
proteins
are
achieved
not
well
understood.
this
study,
we
globally
investigate
role
alternative
3’
UTRs
in
regulating
localization
regions
Drosophila
brain.
We
identify
direct
mRNA
targets
translational
repressor
Pumilio,
finding
that
mRNAs
bound
by
Pumilio
encode
enriched
synaptosomes.
differentially
binds
to
isoforms
same
gene,
favoring
long,
UTRs.
These
longer
tend
remain
soma,
whereas
shorter
UTR
localize
synapse.
cultured
pumilio
mutant
neurons,
severe
axon
outgrowth
defects
were
accompanied
isoform
mislocalization,
encoded
these
displayed
excessive
abundance
at
boutons.
Our
study
identifies
an
important
widespread
mechanism
protein
neurons.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Aug. 26, 2024
ABSTRACT
RNA
molecules
are
localized
to
subcellular
regions
through
interactions
between
localization-regulatory
cis-elements
and
trans-acting
binding
proteins
(RBPs).
However,
the
identities
of
RNAs
whose
localization
is
regulated
by
a
specific
RBP
as
well
impacts
that
on
cell
function
have
generally
remained
unknown.
Here,
we
demonstrate
HNRNPA2B1
acts
keep
out
neuronal
projections.
Using
fractionation,
high-throughput
sequencing,
single
molecule
FISH,
find
hundreds
markedly
increased
abundance
in
neurites
knockout
cells.
These
often
encode
motor
enriched
for
known
sites
motifs
their
3′
UTRs.
The
speed
processivity
microtubule-based
transport
impaired
these
cells,
specifically
neurites.
point
mutations
increase
its
cytoplasmic
relative
wildtype
lead
stronger
suppression
mislocalization
defects
than
seen
with
HNRNPA2B1.
We
further
localizations
target
sensitive
perturbations
decay
machinery,
suggesting
it
HNRNPA2B1’s
role
regulating
stability
may
explain
observations.
findings
establish
negative
regulator
neurite
link
activities
them.