Long‐read RNA‐Seq for the discovery of long noncoding and antisense RNAs in plant organelles DOI Creative Commons
Matheus Sanitá Lima, Douglas Silva Domingues, Alexandre Rossi Paschoal

et al.

Physiologia Plantarum, Journal Year: 2024, Volume and Issue: 176(4)

Published: July 1, 2024

Plant organelle transcription has been studied for decades. As techniques advanced, so did the fields of mitochondrial and plastid transcriptomics. The current view is that genomes are pervasively transcribed, irrespective their size, content, structure, taxonomic origin. However, little known about nature noncoding transcriptomes, including transcribed RNAs (ncRNAs). Next-generation sequencing data have uncovered small ncRNAs in organelles plants other organisms, but long remain poorly understood. Here, we argue publicly available third-generation long-read RNA from can provide a fine-tuned picture within organelles. Indeed, given bloated architectures, plant well suited studying pervasive ncRNAs. Ultimately, hope to showcase this new avenue research while also underlining limitations proposed approach.

Language: Английский

Description of a Reef-forming <i>Neosabellaria upopoy</i> sp. nov. (Annelida: Polychaeta: Sabellariidae) from Shallow Waters off Iburi, Hokkaido, Japan, with Notes on its Reproduction and Early Development DOI Open Access
Eijiroh Nishi, Hirokazu Abe, Naoto Jimi

et al.

Sessile Organisms, Journal Year: 2025, Volume and Issue: 42(1), P. 1 - 17

Published: Jan. 1, 2025

Language: Английский

Citations

0
Long‐read RNA‐Seq for the discovery of long noncoding and antisense RNAs in plant organelles DOI Creative Commons
Matheus Sanitá Lima, Douglas Silva Domingues, Alexandre Rossi Paschoal

et al.

Physiologia Plantarum, Journal Year: 2024, Volume and Issue: 176(4)

Published: July 1, 2024

Plant organelle transcription has been studied for decades. As techniques advanced, so did the fields of mitochondrial and plastid transcriptomics. The current view is that genomes are pervasively transcribed, irrespective their size, content, structure, taxonomic origin. However, little known about nature noncoding transcriptomes, including transcribed RNAs (ncRNAs). Next-generation sequencing data have uncovered small ncRNAs in organelles plants other organisms, but long remain poorly understood. Here, we argue publicly available third-generation long-read RNA from can provide a fine-tuned picture within organelles. Indeed, given bloated architectures, plant well suited studying pervasive ncRNAs. Ultimately, hope to showcase this new avenue research while also underlining limitations proposed approach.

Language: Английский

Citations

0