The emergence of whole-genome assays has initiated numerous genome-wide studies of transcription factor localizations at genomic regulatory elements (enhancers, promoters, silencers, and insulators), as well as facilitated the uncovering of some of the key principles of chromosomal organization. However, the proteins involved in the formation and maintenance of the chromosomal architecture and the organization of regulatory domains remain insufficiently studied. This review attempts to collate the available data on the abundant but still poorly understood family of proteins with clusters of the C2H2 zinc finger domains. One of the best known proteins of this family is a well conserved protein …
Frontiers in Oncology,
Год журнала:
2024,
Номер
14
Опубликована: Июль 17, 2024
Pancreatic
adenocarcinoma,
a
clinically
challenging
malignancy
constitutes
significant
contributor
to
cancer-related
mortality,
characterized
by
an
inherently
poor
prognosis.
This
review
aims
provide
comprehensive
understanding
of
pancreatic
adenocarcinoma
examining
its
multifaceted
etiologies,
including
genetic
mutations
and
environmental
factors.
The
explains
the
complex
molecular
mechanisms
underlying
pathogenesis
summarizes
current
therapeutic
strategies,
surgery,
chemotherapy,
emerging
modalities
such
as
immunotherapy.
Critical
pathways
driving
cancer
development,
KRAS,
Notch,
Hedgehog,
are
discussed.
Current
radiation,
discussed,
with
emphasis
on
their
limitations,
particularly
in
terms
postoperative
relapse.
Promising
research
areas,
liquid
biopsies,
personalized
medicine,
gene
editing,
explored,
demonstrating
potential
for
enhancing
diagnosis
treatment.
While
immunotherapy
presents
promising
prospects,
it
faces
challenges
related
immune
evasion
mechanisms.
Emerging
directions,
encompassing
CRISPR/Cas9
genome
computational
intelligence
applications,
hold
promise
refining
diagnostic
approaches
interventions.
By
integrating
insights
from
genetic,
molecular,
clinical
research,
innovative
strategies
that
improve
patient
outcomes
can
be
developed.
Ongoing
these
fields
holds
advancing
treatment
this
formidable
malignancy.
Biotechnology and Bioengineering,
Год журнала:
2020,
Номер
117(6), С. 1747 - 1760
Опубликована: Март 3, 2020
Abstract
Strains
from
Trichoderma
reesei
have
been
used
for
cellulase
production
with
a
long
history.
It
has
well
known
that
biosynthesis
by
the
fungal
species
is
controlled
through
regulators,
and
elucidation
of
their
regulation
network
great
importance
engineering
T.
robust
production.
However,
progress
in
this
regard
still
very
limited.
In
study,
RUT‐C30
was
transformed
an
artificial
zinc
finger
protein
(AZFP)
library,
mutant
M2
improved
screened.
Compared
to
its
parent
strain,
filter
paper
activity
endo‐β‐glucanase
cellulases
produced
increased
67.2%
35.3%,
respectively.
Analysis
quantitative
reverse
transcription
polymerase
chain
reaction
indicated
significant
downregulation
putative
gene
ctf1
M2,
deletion
mutants
were
thus
developed
further
studies.
An
increase
36.9%
observed
mutants,
but
when
constitutively
overexpressed
under
control
strong
pdc1
promoter,
substantially
compromised.
Comparative
transcriptomic
analysis
revealed
upregulated
encoding
regulator
VIB1,
downregulated
another
RCE1,
which
consequently
genes
factors
XYR1
ACE3
activation
cellulolytic
enzymes.
As
result,
characterized
as
repressor
RUT‐C30,
elucidating
molecular
mechanism
underlying
rational
design
develop
strains
And
meantime,
AZFP
transformation
validated
be
effective
strategy
identifying
functions
genome
.
Viruses,
Год журнала:
2020,
Номер
12(11), С. 1322 - 1322
Опубликована: Ноя. 18, 2020
The
zinc
finger
proteins
make
up
a
significant
part
of
the
proteome
and
perform
huge
variety
functions
in
cell.
CCCH-type
have
gained
attention
due
to
their
unusual
ability
interact
with
RNA
thereby
control
different
steps
metabolism.
Since
virus
infections
interfere
metabolism,
dynamic
changes
replication
are
expected
happen.
In
present
review,
we
will
discuss
how
three
proteins,
ZC3H11A,
MKRN1,
U2AF1,
human
adenovirus
replication.
We
summarize
these
cellular
focus
on
potential
pro-
or
anti-viral
activities
during
lytic
infection.
Physiological Reviews,
Год журнала:
2022,
Номер
102(3), С. 1449 - 1494
Опубликована: Март 28, 2022
Aging
is
the
single
largest
risk
factor
for
many
debilitating
conditions,
including
heart
diseases,
stroke,
cancer,
diabetes,
and
neurodegenerative
disorders.
Although
far
from
understood
in
its
full
complexity,
it
scientifically
well
established
that
aging
influenced
by
genetic
environmental
factors
can
be
modulated
various
interventions.
One
of
aging's
early
hallmarks
aberrations
transcriptional
networks,
controlling
example
metabolic
homeostasis
or
response
to
stress.
Evidence
different
model
organisms
abounds
a
number
evolutionarily
conserved
transcription
factors,
which
control
such
affect
life
span
health
across
species.
These
thus
potentially
represent
regulators
longevity
are
emerging
as
important
targets
challenging
quest
develop
treatments
mitigate
age-related
possibly
even
slow
itself.
This
review
provides
an
overview
impact
diseases
at
least
one
multicellular
organism
(nematodes,
flies,
mice)
and/or
tentatively
linked
human
aging.
Discussed
general
evidence
regulation
disease,
followed
more
detailed
look
selected
families,
common
pathways
involved,
targeting
strategy
geroprotective
Nature Communications,
Год журнала:
2023,
Номер
14(1)
Опубликована: Июнь 2, 2023
Abstract
Optogenetic
tools
can
provide
fine
spatial
and
temporal
control
over
many
biological
processes.
Yet
the
development
of
new
light-switchable
protein
variants
remains
challenging,
field
still
lacks
general
approaches
to
engineering
or
discovering
with
functions.
Here,
we
adapt
strategies
for
domain
insertion
mammalian-cell
expression
generate
screen
a
library
candidate
optogenetic
directly
in
mammalian
cells.
The
approach
is
based
on
AsLOV2
photoswitchable
at
all
possible
positions
interest,
introduction
into
cells,
light/dark
selection
activity.
We
demonstrate
approach’s
utility
using
Gal4-VP64
transcription
factor
as
model
system.
Our
resulting
LightsOut
exhibits
>
150-fold
change
transcriptional
activity
between
dark
blue
light
conditions.
show
that
function
generalizes
analogous
sites
two
additional
Cys6Zn2
C2H2
zinc
finger
domains,
providing
starting
point
regulation
broad
class
factors.
streamline
identification
single-protein
switches,
particularly
cases
where
structural
biochemical
knowledge
limited.