Engineering Gene-Specific DNAzymes for Accessible and Multiplexed Nucleic Acid Testing DOI Creative Commons
Lu Gao, Ke Yi, Yun Tan

и другие.

JACS Au, Год журнала: 2024, Номер 4(4), С. 1664 - 1672

Опубликована: Апрель 9, 2024

The accurate and timely detection of disease biomarkers at the point-of-care is essential to ensuring effective treatment epidemiological surveillance. Here, we report selection engineering RNA-cleaving DNAzymes that respond specific genetic markers amplify signals. Because target-specific activation gene-specific (gDz) like trans-cleavage activity clustered regularly interspaced short palindromic repeats (CRISPR) CRISPR-associated (Cas) machinery, further developed a CRISPR-like assay using DNAzyme coupled with isothermal sequence signal amplification (CLARISSA) for nucleic acid in clinical samples. Building on high specificity orthogonality gDzs, CLARISSA highly versatile expandable multiplex testing. Upon integration an recombinase polymerase amplification, enabled human papillomavirus (HPV) 16 189 cervical samples collected from cancer screening participants (n = 189) 100% sensitivity 97.4% specificity, respectively. A multiplexed allowed simultaneous analyses HPV16 HPV18 46 samples, which returned 96.3% 83.3% HPV18, No false positives were found throughout our tests. Besides fluorescence readout fluorogenic reporter probes, also demonstrated be fully compatible visual lateral flow readout. sensitivity, accessibility, multiplexity, believe ideal CRISPR-Dx alternative diagnosis field-based applications.

Язык: Английский

Rapid One-Pot Detection of SARS-CoV-2 Based on a Lateral Flow Assay in Clinical Samples DOI Creative Commons
Chao Zhang, Tingting Zheng, Hua Wang

и другие.

Analytical Chemistry, Год журнала: 2021, Номер 93(7), С. 3325 - 3330

Опубликована: Фев. 11, 2021

Rapid tests for pathogen identification and spread assessment are critical infectious disease control prevention. The of viral outbreaks requires a nucleic acid diagnostic test that is sensitive simple delivers fast reliable results. Here, we report one-pot direct reverse transcript loop-mediated isothermal amplification (RT-LAMP) assay SARS-CoV-2 based on lateral flow in clinical samples. entire contiguous sample-to-answer workflow takes less than 40 min from swab sample to result without professional instruments technicians. achieved an accuracy 100% 12 synthetic samples compared the data PCR-based assays. We anticipate our method will provide universal platform rapid point-of-care detection emerging diseases.

Язык: Английский

Процитировано

119

Prospects and challenges of dynamic DNA nanostructures in biomedical applications DOI Creative Commons
Taoran Tian, Yanjing Li, Yunfeng Lin

и другие.

Bone Research, Год журнала: 2022, Номер 10(1)

Опубликована: Май 23, 2022

Abstract The physicochemical nature of DNA allows the assembly highly predictable structures via several fabrication strategies, which have been applied to make breakthroughs in various fields. Moreover, nanostructures are regarded as materials with excellent editability and biocompatibility for biomedical applications. ongoing maintenance release new structure design tools ease work large arbitrary feasible different However, endows them stimulus-responsive mechanisms capable responding biomolecules, such nucleic acids proteins, well biophysical environmental parameters, temperature pH. Via these mechanisms, dynamic settings, including basic research, active drug delivery, biosensor development, tissue engineering. These applications shown versatility nanostructures, unignorable merits that exceed those their traditional counterparts, polymers metal particles. there stability, yield, exogenous DNA, ethical considerations regarding clinical translation. In this review, we first introduce recent efforts discoveries nanotechnology, highlighting uses Then, presented, typical applications, use aptamers, ion concentration/pH-sensitive molecules, strand displacement reactions, protein-based discussed. Finally, challenges

Язык: Английский

Процитировано

113

Pushing Adenosine and ATP SELEX for DNA Aptamers with Nanomolar Affinity DOI

Yuzhe Ding,

Juewen Liu

Journal of the American Chemical Society, Год журнала: 2023, Номер 145(13), С. 7540 - 7547

Опубликована: Март 22, 2023

The classical DNA aptamer for adenosine and ATP has been the most used small molecule binding biosensing, imaging, nanotechnology. This sequence recurred multiple times in previous selections, all selections a high concentration of as target. Herein, two separate were performed using targets. By pushing target concentrations down to low micromolar range, new aptamers with Kd 230 nM obtained, showing around 30-fold higher affinity compared aptamer. still dominated library early rounds but it was suppressed later rounds. bind one instead two. Mutation studies confirmed their secondary structures specific binding. Using deep sequencing data from long-standing questions such existence one-site mutation distribution addressed. Comparisons made previously reported ATP. Finally, strand-displacement biosensor tested selectivity its nucleotides.

Язык: Английский

Процитировано

69

A DNA-based hydrogel for exosome separation and biomedical applications DOI Creative Commons
Jianpu Tang, Xuemei Jia, Qian Li

и другие.

Proceedings of the National Academy of Sciences, Год журнала: 2023, Номер 120(28)

Опубликована: Июль 3, 2023

Exosomes (EXOs) have been proven as biomarkers for disease diagnosis and agents therapeutics. Great challenge remains in the separation of EXOs with high-purity low-damage from complex biological media, which is critical downstream applications. Herein, we report a DNA-based hydrogel to realize specific nondestructive media. The separated were directly utilized detection human breast cancer clinical samples, well applied therapeutics myocardial infarction rat models. materials chemistry basis this strategy involved synthesis ultralong DNA chains via an enzymatic amplification, formation hydrogels through complementary base-pairing. These that contained polyvalent aptamers able recognize bind receptors on EXOs, efficient binding ensured selective media into further formed networked hydrogel. Based hydrogel, rationally designed optical modules introduced exosomal pathogenic microRNA, achieved classification patients versus healthy donors 100% precision. Furthermore, mesenchymal stem cell–derived was proved significant therapeutic efficacy repairing infarcted myocardium We envision hydrogel–based bioseparation system promising powerful biotechnology, will promote development extracellular vesicles nanobiomedicine.

Язык: Английский

Процитировано

61

Digital microfluidics for biological analysis and applications DOI Open Access
Xing Xu,

Linfeng Cai,

Shanshan Liang

и другие.

Lab on a Chip, Год журнала: 2023, Номер 23(5), С. 1169 - 1191

Опубликована: Янв. 1, 2023

Digital microfluidic (DMF) bioassays with the benefits of automation, addressability, integration and dynamic configuration ability for nucleic acids, proteins, immunoreaction cell analysis are presented in this review.

Язык: Английский

Процитировано

58

An Overview of Biopolymers for Drug Delivery Applications DOI Creative Commons
Ocsana Opriş,

Cristina Mormile,

Ildikó Lung

и другие.

Applied Sciences, Год журнала: 2024, Номер 14(4), С. 1383 - 1383

Опубликована: Фев. 8, 2024

Nowadays, drug delivery has an important role in medical therapy. The use of biopolymers developing systems (DDSs) is increasingly attracting attention due to their remarkable and numerous advantages, contrast conventional polymers. Biopolymers have many advantages (biodegradability, biocompatibility, renewability, affordability, availability), which are extremely for materials with applications the biomedical field. Additionally, appropriate when they improve functioning a number positive effects on human life. Therefore, this review presents most used applications, especially delivery. In addition, by combining different DDSs tailored functional properties (e.g., physical properties, biodegradability) can be developed. This summarizes provides data progress research (chitosan, alginate, starch, cellulose, albumin, silk fibroin, collagen, gelatin) DDSs, preparation, mechanism action.

Язык: Английский

Процитировано

34

Recent advances in centrifugal microfluidics for point-of-care testing DOI
Huijuan Yuan,

Zeyu Miao,

Chao Wan

и другие.

Lab on a Chip, Год журнала: 2025, Номер unknown

Опубликована: Янв. 1, 2025

Centrifugal microfluidics, with its advantages of rapid and precise fluid control without the need for external pressure, is widely applied in point-of-care testing.

Язык: Английский

Процитировано

3

Strand Displacement Amplification Assisted CRISPR-Cas12a Strategy for Colorimetric Analysis of Viral Nucleic Acid DOI
Shaohua Gong, Shiqi Zhang, Xi Wang

и другие.

Analytical Chemistry, Год журнала: 2021, Номер 93(45), С. 15216 - 15223

Опубликована: Ноя. 5, 2021

The development of a sensitive, facile, and cost-effective colorimetric method is great significance for the point-of-care testing viral nucleic acid. Herein, we reported strand displacement amplification assisted CRISPR-Cas12a (SDACC) analysis hepatitis B virus (HBV) DNA was chosen as target to trigger (SDA) generate abundant single-strand (ssDNA) products. ssDNA amplicon hybridized with template activate trans-cleavage activity CRISPR-Cas12a, leading nonspecific cleavage on GOx-ssDNA-modified magnetic beads release GOx. released GOx capable catalyzing substrate solution color change, which could be directly observed by naked eyes. SDACC strategy identify single-base mismatch located in sequence achieve sensitive detection HBV limit low 41.8 fM. Notably, sophisticated primer design complicated process circumvented. current approach realizes simple, low-cost, acid holds promise practical application infection diagnosis.

Язык: Английский

Процитировано

103

DNA nanotechnology-empowered nanoscopic imaging of biomolecules DOI
Fan Li, Jiang Li, Baijun Dong

и другие.

Chemical Society Reviews, Год журнала: 2021, Номер 50(9), С. 5650 - 5667

Опубликована: Янв. 1, 2021

DNA nanotechnology has led to the rise of nanostructures, which possess programmable shapes and are capable organizing different functional molecules materials. A variety nanostructure-based imaging probes have been developed.

Язык: Английский

Процитировано

99

Identification of SARS-CoV-2-against aptamer with high neutralization activity by blocking the RBD domain of spike protein 1 DOI Creative Commons
Ge Yang, Ziyue Li, Muhammad Irfan

и другие.

Signal Transduction and Targeted Therapy, Год журнала: 2021, Номер 6(1)

Опубликована: Июнь 10, 2021

Язык: Английский

Процитировано

85