Benchmarking Spike Rate Inference in Population Calcium Imaging DOI Creative Commons

Lucas Theis,

Philipp Berens, Emmanouil Froudarakis

и другие.

Neuron, Год журнала: 2016, Номер 90(3), С. 471 - 482

Опубликована: Май 1, 2016

Язык: Английский

Integration of optogenetics with complementary methodologies in systems neuroscience DOI
Christina K. Kim, Avishek Adhikari, Karl Deisseroth

и другие.

Nature reviews. Neuroscience, Год журнала: 2017, Номер 18(4), С. 222 - 235

Опубликована: Март 17, 2017

Язык: Английский

Процитировано

648

Genetically encoded indicators of neuronal activity DOI
Michael Z. Lin, Mark J. Schnitzer

Nature Neuroscience, Год журнала: 2016, Номер 19(9), С. 1142 - 1153

Опубликована: Авг. 26, 2016

Язык: Английский

Процитировано

620

The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins DOI
Erik A. Rodriguez, Robert E. Campbell, John Y. Lin

и другие.

Trends in Biochemical Sciences, Год журнала: 2016, Номер 42(2), С. 111 - 129

Опубликована: Ноя. 1, 2016

Язык: Английский

Процитировано

576

High-speed recording of neural spikes in awake mice and flies with a fluorescent voltage sensor DOI Open Access
Yiyang Gong, Cheng Huang,

Jin Zhong Li

и другие.

Science, Год журнала: 2015, Номер 350(6266), С. 1361 - 1366

Опубликована: Дек. 11, 2015

In vivo imaging of neuronal voltage spikes Neuroscientists have long sought tools that allow optical individual neurons' membrane dynamics in awake behaving animals. Gong et al. genetically engineered a protein indicator can report action potentials with <1-ms precision and orders magnitude lower spike detection error rates than were previously possible. They thus able to record the brains mice fruit flies. Science , this issue p. 1361

Язык: Английский

Процитировано

460

Labeling of active neural circuits in vivo with designed calcium integrators DOI
Benjamin F. Fosque, Yi Sun, Hod Dana

и другие.

Science, Год журнала: 2015, Номер 347(6223), С. 755 - 760

Опубликована: Фев. 12, 2015

The identification of active neurons and circuits in vivo is a fundamental challenge understanding the neural basis behavior. Genetically encoded calcium (Ca(2+)) indicators (GECIs) enable quantitative monitoring cellular-resolution activity during However, such require online within limited field view. Alternatively, post hoc staining immediate early genes (IEGs) indicates highly cells entire brain, albeit with poor temporal resolution. We designed fluorescent sensor, CaMPARI, that combines genetic targetability link to GECIs permanent, large-scale labeling IEGs, allowing temporally precise "activity snapshot" large tissue volume. CaMPARI undergoes efficient irreversible green-to-red conversion only when elevated intracellular Ca(2+) experimenter-controlled illumination coincide. demonstrate utility freely moving larvae zebrafish flies, head-fixed mice adult flies.

Язык: Английский

Процитировано

447

Genetically Encoded Fluorescent Biosensors Illuminate the Spatiotemporal Regulation of Signaling Networks DOI
Eric C. Greenwald, Sohum Mehta, Jin Zhang

и другие.

Chemical Reviews, Год журнала: 2018, Номер 118(24), С. 11707 - 11794

Опубликована: Дек. 14, 2018

Cellular signaling networks are the foundation which determines fate and function of cells as they respond to various cues stimuli. The discovery fluorescent proteins over 25 years ago enabled development a diverse array genetically encodable biosensors that capable measuring spatiotemporal dynamics signal transduction pathways in live cells. In an effort encapsulate breadth have expanded, we endeavored assemble comprehensive list published engineered biosensors, discuss many molecular designs utilized their development. Then, review how high temporal spatial resolution afforded by has aided our understanding regulation at cellular subcellular level. Finally, highlight some emerging areas research both biosensor design applications on forefront

Язык: Английский

Процитировано

445

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging DOI Open Access
Ahmed S. Abdelfattah, Takashi Kawashima, Amrita Singh

и другие.

Science, Год журнала: 2019, Номер 365(6454), С. 699 - 704

Опубликована: Авг. 1, 2019

Genetically encoded voltage indicators (GEVIs) enable monitoring of neuronal activity at high spatial and temporal resolution. However, the utility existing GEVIs has been limited by brightness photostability fluorescent proteins rhodopsins. We engineered a GEVI, called Voltron, that uses bright photostable synthetic dyes instead protein-based fluorophores, thereby extending number neurons imaged simultaneously in vivo factor 10 enabling imaging for significantly longer durations relative to GEVIs. used Voltron mice, zebrafish, fruit flies. In mouse cortex, allowed single-trial recording spikes subthreshold signals from dozens over 15-minute period continuous imaging. larval enabled precise correlation spike timing with behavior.

Язык: Английский

Процитировано

444

Next-generation probes, particles, and proteins for neural interfacing DOI Creative Commons
Jonathan Rivnay,

Huiliang Wang,

Lief E. Fenno

и другие.

Science Advances, Год журнала: 2017, Номер 3(6)

Опубликована: Июнь 2, 2017

Multimodal and multidisciplinary approaches lead to next-generation technologies for reading modulating neural function.

Язык: Английский

Процитировано

438

A Guide to Fluorescent Protein FRET Pairs DOI Creative Commons
Bryce T. Bajar, Emily Wang, Shu Zhang

и другие.

Sensors, Год журнала: 2016, Номер 16(9), С. 1488 - 1488

Опубликована: Сен. 14, 2016

Förster or fluorescence resonance energy transfer (FRET) technology and genetically encoded FRET biosensors provide a powerful tool for visualizing signaling molecules in live cells with high spatiotemporal resolution. Fluorescent proteins (FPs) are most commonly used as both donor acceptor fluorophores biosensors, especially since FPs encodable live-cell compatible. In this review, we will an overview of methods to measure changes biological contexts, discuss the palette FP pairs developed their relative strengths weaknesses, note important factors consider when using studies.

Язык: Английский

Процитировано

413

Next-generation GRAB sensors for monitoring dopaminergic activity in vivo DOI

Fangmiao Sun,

Jingheng Zhou, Bing Dai

и другие.

Nature Methods, Год журнала: 2020, Номер 17(11), С. 1156 - 1166

Опубликована: Окт. 21, 2020

Язык: Английский

Процитировано

402