bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2023,
Номер
unknown
Опубликована: Июль 16, 2023
Abstract
Background
In
agricultural
ecosystems,
outbreaks
of
diseases
are
frequent
and
pose
a
significant
threat
to
food
security.
A
successful
pathogen
undergoes
complex
well-timed
sequence
regulatory
changes
avoid
detection
by
the
host
immune
system,
hence
well-tuned
gene
regulation
is
essential
for
survival.
However,
extent
which
polymorphisms
in
population
provide
an
adaptive
advantage
poorly
understood.
Results
We
used
Zymoseptoria
tritici
,
one
most
important
pathogens
wheat,
generate
genome-wide
map
polymorphism
governing
expression.
investigated
transcription
levels
146
strains
grown
under
nutrient
starvation
performed
expression
quantitative
trait
loci
(eQTL)
mapping.
identified
cis
-eQTLs
65.3%
all
genes
majority
eQTL
within
2kb
upstream
downstream
start
site
(TSS).
also
show
that
different
elements
contributes
disproportionally
variation.
Investigating
categories,
we
found
enrichment
variants
predicted
be
fungal
pathogenesis
but
with
comparatively
low
effect
size,
suggesting
separate
layer
involving
epigenetics.
previously
reported
trait-associated
SNPs
populations
frequently
-regulatory
neighboring
implications
architecture.
Conclusions
Overall,
our
study
provides
extensive
evidence
single
segregate
large-scale
variation
likely
fuel
rapid
adaptation
resistant
hosts
environmental
change.
Frontiers in Bioscience-Elite,
Год журнала:
2024,
Номер
16(1)
Опубликована: Март 12, 2024
In
most
ecosystems,
plants
establish
complex
symbiotic
relationships
with
organisms,
such
as
bacteria
and
fungi,
which
significantly
influence
their
health
by
promoting
or
inhibiting
growth.
These
involve
biochemical
exchanges
at
the
cellular
level
that
affect
plant
physiology
have
evolutionary
implications,
species
diversification,
horizontal
gene
transfer,
symbiosis
mutualism,
environmental
adaptation,
positive
impacts
on
community
structure
biodiversity.
For
these
reasons,
contemporary
research,
moving
beyond
observational
studies,
seeks
to
elucidate
molecular
basis
of
interactions;
however,
gaps
in
knowledge
remain.
This
is
particularly
noticeable
understanding
how
distinguish
between
beneficial
antagonistic
microorganisms.
light
above,
this
literature
review
aims
address
some
exploring
key
mechanisms
common
interspecies
relationships.
Thus,
our
study
presents
novel
insights
into
archetypes,
focusing
antibiosis
process
microbial
signaling,
including
chemotaxis
quorum
sensing.
Additionally,
it
examined
endophytism,
pre-mRNA
splicing,
transcriptional
plasticity,
highlighting
roles
transcription
factors
epigenetic
regulation
functions
interacting
organisms.
findings
emphasize
importance
confluences
natural
environments,
are
crucial
for
future
theoretical
practical
applications,
improving
nutrition,
protecting
against
pathogens,
developing
transgenic
crops,
sustainable
agriculture,
researching
disease
mechanisms.
It
was
concluded
because
characteristics
various
biomolecules
involved
biological
interactions,
there
interconnected
networks
nature
give
rise
different
ecological
scaffolds.
integrate
a
myriad
functionally
organic
units
belong
kingdoms.
interweaving
underscores
complexity
multidisciplinary
integration
required
understand
plant–microbe
interactions
level.
Regarding
limitations
inherent
study,
recognized
researchers
face
significant
obstacles.
include
technical
difficulties
experimentation
fieldwork,
well
arduous
task
consolidating
summarizing
academic
articles.
Challenges
range
from
dynamics
unbiased
objective
interpretation
diverse
ever-changing
literature.
Molecular Plant Pathology,
Год журнала:
2024,
Номер
25(4)
Опубликована: Апрель 1, 2024
Abstract
Pyricularia
oryzae
(syn.
Magnaporthe
),
is
a
filamentous
ascomycete
that
causes
major
disease
called
blast
on
cereal
crops,
as
well
wide
variety
of
wild
and
cultivated
grasses.
Blast
diseases
have
tremendous
impact
worldwide
particularly
rice
wheat,
where
the
emerged
in
South
America
1980s,
before
spreading
to
Asia
Africa.
Its
economic
importance,
coupled
with
its
amenability
molecular
genetic
manipulation,
inspired
extensive
research
efforts
aiming
at
understanding
biology
evolution.
In
past
40
years,
this
plant‐pathogenic
fungus
has
model
plant–microbe
interactions.
review,
we
focus
clarification
taxonomy
structure
species
host
range
determinants.
We
also
discuss
recent
studies
deciphering
lifecycle.
Taxonomy
Kingdom:
Fungi
,
phylum:
Ascomycota
sub‐phylum:
Pezizomycotina
class:
Sordariomycetes
order:
Magnaporthales
family:
Pyriculariaceae
genus:
Pyricularia.
Host
P.
ability
infect
Poaceae
.
It
structured
into
different
host‐specialized
lineages
are
each
associated
few
plant
genera.
The
best
known
cause
damage
but
it
can
attack
other
economically
important
crops
such
maize,
barley,
finger
millet.
Disease
symptoms
necrotic
lesions
or
bleaching
all
aerial
parts
plants,
including
leaf
blades,
sheaths,
inflorescences
(panicles,
spikes,
seeds).
Characteristic
leaves
diamond‐shaped
silver
often
brown
margin
whose
appearance
influenced
by
numerous
factors
genotype
environmental
conditions.
USEFUL
WEBSITES
Resources
URL
Genomic
data
repositories
http://genome.jouy.inra.fr/gemo/
http://openriceblast.org/
http://openwheatblast.net/
Genome
browser
for
fungi
(including
)
http://fungi.ensembl.org/index.html
Comparative
genomics
database
https://mycocosm.jgi.doe.gov/mycocosm/home
T‐DNA
mutant
http://atmt.snu.kr/
http://www.phi‐base.org/
SNP
expression
https://fungidb.org/fungidb/app/
Journal of Microscopy,
Год журнала:
2025,
Номер
unknown
Опубликована: Янв. 11, 2025
Abstract
Magnaporthe
oryzae
is
the
causal
agent
of
rice
blast,
one
most
serious
diseases
affecting
cultivation
around
world.
During
plant
infection,
M.
forms
a
specialised
infection
structure
called
an
appressorium.
The
appressorium
in
response
to
hydrophobic
leaf
surface
and
relies
on
multiple
signalling
pathways,
including
MAP
kinase
phosphorelay
cAMP‐dependent
signalling,
integrated
with
cell
cycle
control
autophagic
death
conidium.
Together,
these
pathways
regulate
morphogenesis.The
generates
enormous
turgor,
applied
as
mechanical
force
breach
cuticle.
Re‐polarisation
requires
turgor‐dependent
sensor
which
senses
when
critical
threshold
turgor
has
been
reached
initiate
septin‐dependent
re‐polarisation
infection.
Invasive
growth
then
differential
expression
secretion
large
repertoire
effector
proteins
secreted
by
distinct
secretory
depending
their
destination,
also
governed
codon
usage
tRNA
thiolation.
Cytoplasmic
effectors
require
unconventional
Golgi‐independent
pathway
evidence
suggests
that
clathrin‐mediated
endocytosis
necessary
for
delivery
into
cells.
blast
fungus
develops
transpressorium,
specific
invasion
used
move
from
cell‐to‐cell
using
pit
field
sites
containing
plasmodesmata,
facilitate
its
spread
tissue.
This
controlled
same
development
hyphal
constriction.
Recent
progress
understanding
mechanisms
this
devastating
pathogen
live
imaging
procedures
are
presented.
PLoS Pathogens,
Год журнала:
2023,
Номер
19(9), С. e1011294 - e1011294
Опубликована: Сен. 11, 2023
Plant
pathogens
secrete
proteins
called
effectors
that
target
host
cellular
processes
to
promote
disease.
Recently,
structural
genomics
has
identified
several
families
of
fungal
share
a
similar
three-dimensional
structure
despite
remarkably
variable
amino-acid
sequences
and
surface
properties.
To
explore
the
selective
forces
underlie
sequence
variability
structurally-analogous
effectors,
we
focused
on
MAX
family
are
major
determinants
virulence
in
rice
blast
fungus
Pyricularia
oryzae
.
Using
structure-informed
gene
annotation,
58
78
effector
genes
per
genome
set
120
isolates
representing
seven
host-associated
lineages.
The
expression
was
primarily
restricted
early
biotrophic
phase
infection
strongly
influenced
by
plant.
Pangenome
analyses
demonstrated
extensive
presence/absence
polymorphism
loss
events
possibly
involved
range
adaptation.
However,
knock-in
experiments
did
not
reveal
strong
effect
phenotypes
suggesting
other
evolutionary
mechanisms
main
drivers
losses.
displayed
high
levels
standing
variation
rates
non-synonymous
substitutions,
pointing
widespread
positive
selection
shaping
molecular
diversity
effectors.
combination
these
with
data
revealed
acts
mostly
residues
located
particular
elements
at
specific
positions.
By
providing
comprehensive
catalog
amino
acid
polymorphism,
identifying
diversity,
our
work
will
inform
future
studies
aimed
elucidating
function
mode
action
Phytopathology Research,
Год журнала:
2024,
Номер
6(1)
Опубликована: Фев. 22, 2024
Abstract
Rice
is
a
staple
crop
feeding
more
than
50%
of
the
world’s
population
and,
its
sustainable
production
crucial
to
global
food
security.
However,
blast
disease
caused
by
filamentous
fungus
Magnaporthe
oryzae
(anamorph:
Pyricularia
)
threatens
rice
as
it
can
reduce
grain
yields
over
30%
in
epidemic
years.
Therefore,
deciphering
molecular
mechanisms
M.
-rice
interaction
and
mechanism
that
how
overcomes
defense
for
developing
new
strategies
make
green
fungicides
disease-resistant
varieties.
This
review
provides
comprehensive
overview
latest
advances
understanding
which
perceives
host
surface
signals
subsequently
develops
specific
infection
structure
called
appressoria.
In
addition,
delves
into
utilizes
overcome
immunity,
turn
allows
colonize
tissues.
Finally,
we
propose
perspectives
dissecting
pathogenesis
controlling
disease.
New Phytologist,
Год журнала:
2023,
Номер
241(3), С. 1007 - 1020
Опубликована: Дек. 10, 2023
Summary
Rice
blast,
the
most
destructive
disease
of
cultivated
rice
world‐wide,
is
caused
by
filamentous
fungus
Magnaporthe
oryzae
.
To
cause
in
plants,
M.
secretes
a
diverse
range
effector
proteins
to
suppress
plant
defense
responses,
modulate
cellular
processes,
and
support
pathogen
growth.
Some
effectors
can
be
secreted
appressoria
even
before
host
penetration,
while
others
accumulate
apoplast,
or
enter
living
cells
where
they
target
specific
subcellular
compartments.
During
infection,
blast
induces
formation
specialized
structure
known
as
biotrophic
interfacial
complex
(BIC),
which
appears
crucial
for
delivery
into
cells.
Here,
we
review
recent
advances
cell
biology
–host
interactions
show
how
new
breakthroughs
control
have
stemmed
from
an
increased
understanding
are
deployed
delivered
enable
invasion
susceptibility.
Pathogens,
Год журнала:
2023,
Номер
12(3), С. 379 - 379
Опубликована: Фев. 26, 2023
Magnaporthe
oryzae
is
one
of
the
most
devastating
pathogenic
fungi
that
affects
a
wide
range
cereal
plants,
especially
rice.
Rice
blast
disease
causes
substantial
economic
losses
around
globe.
The
M.
genome
was
first
sequenced
at
beginning
this
century
and
recently
updated
with
improved
annotation
completeness.
In
review,
key
molecular
findings
on
fungal
development
pathogenicity
mechanisms
are
summarized,
focusing
fully
characterized
genes
based
mutant
analysis.
These
include
involved
in
various
biological
processes
pathogen,
such
as
vegetative
growth,
conidia
development,
appressoria
formation
penetration,
pathogenicity.
addition,
our
syntheses
also
highlight
gaps
current
understanding
virulence.
We
hope
review
will
serve
to
improve
comprehensive
assist
control
strategy
designs
future.
Proceedings of the National Academy of Sciences,
Год журнала:
2025,
Номер
122(11)
Опубликована: Март 10, 2025
Pathogens
must
precisely
tailor
their
gene
expression
to
cause
infection.
However,
a
signaling
cascade
from
host
signal
effector
production
has
remained
elusive
for
metazoan
pathogens.
Here,
we
show
that
plants
contain
molecular
signals,
termed
effectostimulins,
activate
the
first
identified
regulator
of
plant-parasitic
nematode
effectors.
SUGR-1
directly
binds
promoters,
and
is
central
transcriptional
network
activates
58
genes.
Importantly,
demonstrate
downregulation
sugr-1
inhibits
parasitism,
underlining
as
valuable
target
crop
protection
food
security.
This,
in
wider
context
nematodes
parasites
humans
other
animals,
scope
potentially
broader
impact:
Disrupting
could,
principle,
be
applied
any
pathogen
secrets
aBIOTECH,
Год журнала:
2023,
Номер
4(2), С. 140 - 154
Опубликована: Март 27, 2023
Abstract
Magnaporthe
oryzae
is
a
hemibiotrophic
fungus
responsible
for
the
economically
devastating
and
recalcitrant
rice
blast
disease.
However,
not
only
restricted
to
plants
as
it
can
also
infect
wheat,
millet,
other
crops.
Despite
previous
outstanding
discoveries
aimed
understand
control
disease,
remains
one
of
most
important
pathogens
that
threatens
global
food
security.
To
cause
M.
initiates
morphological
changes
attach,
penetrate,
colonize
cells,
all
while
suppressing
plant
immune
defenses
would
otherwise
hinder
its
proliferation.
As
such,
actively
secretes
battery
small
proteins
called
“effectors”
manipulate
host
machinery.
In
this
review,
we
summarize
latest
findings
in
effector
identification,
expression,
regulation,
functionality.
We
review
studied
effectors
their
roles
pathogenesis.
Additionally,
discern
current
methodologies
structurally
catalog
effectors,
highlight
importance
climate
change
impact
on
future