Long noncoding RNA lncRNA354 functions as a competing endogenous RNA of miR160b to regulate ARF genes in response to salt stress in upland cotton

Plant Cell & Environment, Год журнала: 2021, Номер 44(10), С. 3302 - 3321

Опубликована: Июнь 24, 2021

Long non-coding RNAs (lncRNAs) play important roles in response to biotic and abiotic stress through acting as competing endogenous (ceRNAs) decoy mature miRNAs. However, whether this mechanism is involved cotton salt remains unknown. We report the characterization of an lncRNA, lncRNA354, whose expression was reduced salt-treated localized at nucleus cytoplasm. Using target mimic (eTM) analysis, we predicted that lncRNA354 had a potential binding site for miR160b. Transient tobacco demonstrated miR160b eTM attenuated suppression its genes, including auxin factors (ARFs). Silencing or overexpressing affected ARFs. targets GhARF17/18 resulted taller plants enhanced resistant stress. Overexpression Arabidopsis led dwarf plants, decreased root dry weight tolerance. Our results show lncRNA354-miR160b effect on may modulate signalling thus affect growth. These also shed new light lncRNA-associated responses

Язык: Английский

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The Characters of Non-Coding RNAs and Their Biological Roles in Plant Development and Abiotic Stress Response

International Journal of Molecular Sciences, Год журнала: 2022, Номер 23(8), С. 4124 - 4124

Опубликована: Апрель 8, 2022

Plant growth and development are greatly affected by the environment. Many genes have been identified to be involved in regulating plant adaption of abiotic stress. Apart from protein-coding genes, more evidence indicates that non-coding RNAs (ncRNAs), including small long ncRNAs (lncRNAs), can target developmental stress-responsive mRNAs, regulatory DNA regions, proteins regulate transcription various at transcriptional, posttranscriptional, epigenetic level. Currently, molecular mechanisms sRNAs lncRNAs controlling response being deeply explored. In this review, we summarize recent research progress plants, focusing on signal factors, expression characters, targets functions, interplay network their stress responses. The complex pathways among RNAs, lncRNAs, plants also discussed. Understanding functional implications responses will benefit us regard use as potential character-determining factors breeding.

Язык: Английский

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Long Non-Coding RNAs: New Players in Plants

International Journal of Molecular Sciences, Год журнала: 2022, Номер 23(16), С. 9301 - 9301

Опубликована: Авг. 18, 2022

During the process of growth and development, plants are prone to various biotic abiotic stresses. They have evolved a variety strategies resist adverse effects these lncRNAs (long non-coding RNAs) type less conserved RNA molecules more than 200 nt (nucleotides) in length. do not code for any protein, but interact with DNA, RNA, protein affect transcriptional, posttranscriptional, epigenetic modulation events. As new regulatory element, play critical role coping environmental pressure during plant development. This article presents comprehensive review on types lncRNAs, mechanism at different molecular levels, coordination between lncRNA miRNA (microRNA) immune responses, latest research progress their response We conclude discussion future direction elaboration function lncRNAs.

Язык: Английский

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Research progress on the roles of lncRNAs in plant development and stress responses

Frontiers in Plant Science, Год журнала: 2023, Номер 14

Опубликована: Март 7, 2023

Long non-coding RNAs (lncRNAs) are of more than 200 nucleotides in length that not (or very rarely) translated into proteins. In eukaryotes, lncRNAs regulate gene expression at the transcriptional, post-transcriptional, and epigenetic levels. categorized according to their genomic position molecular mechanism. This review summarized characteristics mechanisms plant involved vegetative growth, reproduction, stress responses. Our discussion model provide a theoretical basis for further studies breeding.

Язык: Английский

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Roles of long non-coding RNAs in plant immunity

PLoS Pathogens, Год журнала: 2023, Номер 19(5), С. e1011340 - e1011340

Опубликована: Май 11, 2023

Robust plant immune systems are fine-tuned by both protein-coding genes and non-coding RNAs. Long RNAs (lncRNAs) refer to with a length of more than 200 nt usually do not have function belong any other well-known RNA types. The non-protein-coding, low expression, non-conservative characteristics lncRNAs restrict their recognition. Although studies in plants the early stage, emerging shown that employ regulate immunity. Moreover, response stresses, numerous differentially expressed, which manifests actions low-expressed makes plant–microbe/insect interactions convenient system study functions lncRNAs. Here, we summarize current advances lncRNAs, discuss regulatory effects different stages immunity, highlight roles diverse interactions. These insights will only strengthen our understanding but also provide novel insight into responses basis for further research this field.

Язык: Английский

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Advances in Genomic, Transcriptomic, and Metabolomic Analyses of Fruit Quality in Fruit Crops

Horticultural Plant Journal, Год журнала: 2020, Номер 6(6), С. 361 - 371

Опубликована: Ноя. 1, 2020

Fruit quality is the main factor determining market competitiveness; it represents combination of fruit flavor, color, size, and contents aromatic bioactive substances. Research on genetic basis can provide new information about biology, promote genomic-assisted breeding, technological support for regulation via habitat selection and/or control environmental conditions. High-throughput sequencing a powerful research method studying traits, reference genome sequences many important crops have provided vast amounts genomic data. To study quality, to select appropriate omics strategies analyze data meaningfully. Here, we summarize mechanisms formation: gene duplication, transposable element insertion, structural variations methylation in functional genes. We review genomic, transcriptomic, metabolomic that been used traits. also describe some genes associated with traits; these are valuable resource genomics-assisted breeding useful models deciphering agronomic such as hardness, aroma components, sugar acid content. Finally, maximize application information, propose further directions using strategies.

Язык: Английский

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Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis

The Plant Journal, Год журнала: 2022, Номер 112(2), С. 339 - 351

Опубликована: Авг. 19, 2022

SUMMARY The cuticular wax layer on leaf surfaces limits non‐stomatal water loss to the atmosphere and protects against pathogen invasion. Although many genes associated with biosynthesis transport in plants have been identified, their regulatory mechanisms remain largely unknown. Here, we show that MYB transcription factor OsMYB60 positively regulates this helps rice ( Oryza sativa ) tolerate drought stress. Compared wild type japonica cultivar ‘Dongjin’), osmyb60 null mutants osmyb60‐1 osmyb60‐2 exhibited increased sensitivity, more chlorophyll leaching higher rates of loss. Quantitative reverse‐transcription PCR showed function led downregulation genes, leading reduced amounts total components under normal conditions. Yeast one‐hybrid, luciferase transient transcriptional activity, chromatin immunoprecipitation assays revealed directly binds promoter OsCER1 (a key gene involved very‐long‐chain alkane biosynthesis) upregulates its expression. Taken together, these results demonstrate enhances resilience stress by promoting surfaces.

Язык: Английский

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Overview of molecular mechanisms of plant leaf development: a systematic review

Frontiers in Plant Science, Год журнала: 2023, Номер 14

Опубликована: Дек. 7, 2023

Leaf growth initiates in the peripheral region of meristem at apex stem, eventually forming flat structures. Leaves are pivotal organs plants, serving as primary sites for photosynthesis, respiration, and transpiration. Their development is intricately governed by complex regulatory networks. encompasses five processes: leaf primordium initiation, polarity establishment, size expansion, shaping leaf, senescence. The primordia starts from side cone stem. Under precise regulation a series genes, establishes adaxial-abaxial axes, proximal-distal axes medio-lateral polarity, guides cells to divide differentiate specific direction, finally develops into leaves certain shape size. senescence kind programmed cell death that occurs it last stage development. Each these processes meticulously coordinated through intricate interplay among transcriptional factors, microRNAs, plant hormones. This review dedicated examining influences major factors hormones on developmental aspects leaves.

Язык: Английский

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Evaluation of efficacy of non-coding RNA in abiotic stress management of field crops: Current status and future prospective

Plant Physiology and Biochemistry, Год журнала: 2023, Номер 203, С. 107940 - 107940

Опубликована: Авг. 8, 2023

Язык: Английский

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Plant Long Noncoding RNAs: New Players in the Field of Post-Transcriptional Regulations

Non-Coding RNA, Год журнала: 2021, Номер 7(1), С. 12 - 12

Опубликована: Фев. 17, 2021

The first reference to the “C-value paradox” reported an apparent imbalance between organismal genome size and morphological complexity. Since then, next-generation sequencing has revolutionized genomic research revealed that eukaryotic transcriptomes contain a large fraction of non-protein-coding components. Eukaryotic genomes are pervasively transcribed noncoding regions give rise plethora RNAs with undeniable biological functions. Among them, long (lncRNAs) seem represent new layer gene expression regulation, participating in wide range molecular mechanisms at transcriptional post-transcriptional levels. In addition their role epigenetic plant lncRNAs have been associated degradation complementary RNAs, regulation alternative splicing, protein sub-cellular localization, promotion translation post-translational modifications. this review, we report integrate numerous complex through which transcripts regulate plants.

Язык: Английский

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