Integrated analysis of behavioral, epigenetic, and gut microbiome analyses in AppNL-G-F, AppNL-F, and wild type mice DOI Creative Commons
Payel Kundu, Eileen Ruth S. Torres, Keaton Stagaman

и другие.

Scientific Reports, Год журнала: 2021, Номер 11(1)

Опубликована: Фев. 25, 2021

Abstract Epigenetic mechanisms occurring in the brain as well alterations gut microbiome composition might contribute to Alzheimer’s disease (AD). Human amyloid precursor protein knock-in (KI) mice contain Swedish and Iberian mutations ( App NL-F ) or those two also Arctic mutation NL-G-F ). In this study, we assessed whether behavioral cognitive performance 6-month-old , C57BL/6J wild-type (WT) was associated with microbiome, genotype modulates association. The effects observed tests were test-dependent. biodiversity of linked various aspects mouse but differences modulated these relationships. These genotype-dependent associations include members Lachnospiraceae Ruminococcaceae families. a subset female mice, DNA methylation hippocampus investigated hippocampal microbiome. Among other differentially methylated regions, identified 1 Kb region that overlapped ing 3′UTR Tomm40 gene promoter Apoe significantly more than WT mice. integrated analysis revealed positive relationship between amplicon sequence variants (ASVs) within family at gene. Hence, microbes may elicit an impact on AD-relevant via epigenetic changes AD-susceptibility genes neural tissue such epigenome can intestinal physiology affect growth taxa

Язык: Английский

Interaction between microbiota and immunity in health and disease DOI Creative Commons

Danping Zheng,

Timur Liwinski, Eran Elinav

и другие.

Cell Research, Год журнала: 2020, Номер 30(6), С. 492 - 506

Опубликована: Май 20, 2020

Abstract The interplay between the commensal microbiota and mammalian immune system development function includes multifold interactions in homeostasis disease. microbiome plays critical roles training of major components host’s innate adaptive system, while orchestrates maintenance key features host-microbe symbiosis. In a genetically susceptible host, imbalances microbiota-immunity under defined environmental contexts are believed to contribute pathogenesis multitude immune-mediated disorders. Here, we review microbiome-immunity crosstalk their health disease, providing examples molecular mechanisms orchestrating these intestine extra-intestinal organs. We highlight aspects current knowledge, challenges limitations achieving causal understanding host immune-microbiome interactions, as well impact on diseases, discuss how insights may translate towards future microbiome-targeted therapeutic interventions.

Язык: Английский

Процитировано

2844

A metabolomics pipeline for the mechanistic interrogation of the gut microbiome DOI
Shuo Han,

Will Van Treuren,

Curt R. Fischer

и другие.

Nature, Год журнала: 2021, Номер 595(7867), С. 415 - 420

Опубликована: Июль 14, 2021

Язык: Английский

Процитировано

308

Dissecting the contribution of host genetics and the microbiome in complex behaviors DOI Creative Commons
Shelly A. Buffington, Sean W. Dooling, Martina Sgritta

и другие.

Cell, Год журнала: 2021, Номер 184(7), С. 1740 - 1756.e16

Опубликована: Март 11, 2021

Язык: Английский

Процитировано

159

Tryptophan-metabolizing gut microbes regulate adult neurogenesis via the aryl hydrocarbon receptor DOI Creative Commons

George Zhang Wei,

Katherine A. Martin, Peter Yuli Xing

и другие.

Proceedings of the National Academy of Sciences, Год журнала: 2021, Номер 118(27)

Опубликована: Июль 1, 2021

Significance While the effects of gut microbes on brain development and function have been described, mechanisms remain largely unknown. Here, we report that tryptophan-metabolizing secrete indoles regulate neurogenesis in adult hippocampus. This stimulatory effect is mediated by metabolic- immune-linked aryl hydrocarbon receptor (AhR). Another AhR ligand, tryptophan metabolite kynurenine, failed to induce neurogenesis, suggesting ligand specificity AhR-mediated regulation neurogenesis. The indole-AhR signaling pathway elevates transcription factors proteins promote as well key markers synaptic maturation. Our data demonstrate a symbiotic gut–brain coregulatory axis connects metabolic status control

Язык: Английский

Процитировано

132

Gut microbiome modulates Drosophila aggression through octopamine signaling DOI Creative Commons

Yicong Jia,

Shan Jin,

Kunkun Hu

и другие.

Nature Communications, Год журнала: 2021, Номер 12(1)

Опубликована: Май 11, 2021

Abstract Gut microbiome profoundly affects many aspects of host physiology and behaviors. Here we report that gut modulates aggressive behaviors in Drosophila . We found germ-free males showed substantial decrease inter-male aggression, which could be rescued by microbial re-colonization. These are not as competitive wild-type for mating with females, although they displayed regular levels locomotor courtship further interacted diet during a critical developmental period the proper expression octopamine manifestation aggression adult males. findings provide insights into how specific through interaction development.

Язык: Английский

Процитировано

118

The interactions between the host immunity and intestinal microorganisms in fish DOI Open Access
Biyun Zhang, Hong‐Ling Yang, Guo-He Cai

и другие.

Applied Microbiology and Biotechnology, Год журнала: 2024, Номер 108(1)

Опубликована: Янв. 3, 2024

Язык: Английский

Процитировано

25

Unraveling host regulation of gut microbiota through the epigenome–microbiome axis DOI Creative Commons
Michael Le Pepke, Søren B. Hansen, Morten T. Limborg

и другие.

Trends in Microbiology, Год журнала: 2024, Номер 32(12), С. 1229 - 1240

Опубликована: Июнь 5, 2024

Recent studies of dynamic interactions between epigenetic modifications a host organism and the composition or activity its associated gut microbiota suggest an opportunity for to shape microbiome through alterations that lead changes in gene expression noncoding RNA activity. We use insights from microbiota-induced review potential epigenetically regulate microbiome, which bidirectional 'epigenome–microbiome axis' emerges. This axis embeds environmentally induced variation, may influence adaptive evolution host–microbe interactions. furthermore present our perspective on how epigenome–microbiome can be understood investigated within holo-omic framework with applications applied health food sciences.

Язык: Английский

Процитировано

24

Akkermansia muciniphila supplementation in patients with overweight/obese type 2 diabetes: Efficacy depends on its baseline levels in the gut DOI
Yifei Zhang, Ruixin Liu, Yufei Chen

и другие.

Cell Metabolism, Год журнала: 2025, Номер unknown

Опубликована: Янв. 1, 2025

Язык: Английский

Процитировано

3

The interplay between host genetics and the gut microbiome reveals common and distinct microbiome features for complex human diseases DOI Creative Commons

Fengzhe Xu,

Yuanqing Fu,

Ting‐yu Sun

и другие.

Microbiome, Год журнала: 2020, Номер 8(1)

Опубликована: Окт. 8, 2020

Abstract Background Interest in the interplay between host genetics and gut microbiome complex human diseases is increasing, with prior evidence mainly being derived from animal models. In addition, shared distinct features among remain largely unclear. Results This analysis was based on a Chinese population 1475 participants. We estimated SNP-based heritability, which suggested that Desulfovibrionaceae Odoribacter had significant heritability estimates (0.456 0.476, respectively). performed genome-wide association study to identify genetic variants associated microbiome. then conducted bidirectional Mendelian randomization analyses examine potential causal associations diseases. found Saccharibacteria could potentially decrease concentration of serum creatinine increase glomerular filtration rate. On other hand, atrial fibrillation, chronic kidney disease prostate cancer, as predicted by genetics, effects abundance some specific microbiota. For example, fibrillation increased Burkholderiales Alcaligenaceae decreased Lachnobacterium , Bacteroides coprophilus Barnesiellaceae an undefined genus family Veillonellaceae Mitsuokella . Further disease-microbiome feature systemic lupus erythematosus myeloid leukaemia common features. Conclusions These results suggest different share features, may help reshape our understanding aetiology humans.

Язык: Английский

Процитировано

111

Disentangling host–microbiota complexity through hologenomics DOI
Antton Alberdi, Sandra B. Andersen, Morten T. Limborg

и другие.

Nature Reviews Genetics, Год журнала: 2021, Номер 23(5), С. 281 - 297

Опубликована: Окт. 21, 2021

Язык: Английский

Процитировано

87