bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2023,
Номер
unknown
Опубликована: Авг. 5, 2023
Abstract
Sepsis
is
the
leading
systemic
inflammatory
response
syndrome
in
worldwide,
yet
relatively
little
known
about
genes
and
signaling
pathways
involved
sepsis
progression.
The
current
investigation
aimed
to
elucidate
potential
key
candidate
its
associated
complications.
Next
generation
sequencing
(NGS)
dataset
(GSE185263)
was
downloaded
from
Gene
Expression
Omnibus
(GEO)
database,
which
included
data
348
samples
44
normal
control
samples.
Differentially
expressed
(DEGs)
were
identified
using
t-tests
DESeq2
R
package.
Next,
we
made
use
of
g:Profiler
analyze
gene
ontology
(GO)
REACTOME
pathway.
Then
protein-protein
interaction
(PPI)
these
DEGs
visualized
by
Cytoscape
with
Search
Tool
for
Retrieval
Interacting
Genes
(STRING).
Furthermore,
constructed
miRNA-hub
regulatory
network
TF-hub
among
hub
utilizing
miRNet
NetworkAnalyst
online
databases
tool
software.
Finally,
performed
receiver
operating
characteristic
(ROC)
curve
analysis
through
pROC
package
statistical
In
total,
958
identified,
479
up
regulated
down
regulated.
GO
results
showed
that
mainly
enriched
regulation
cellular
process,
stimulus,
extracellular
matrix
organization
immune
system.
PRKN,
KIT,
FGFR2,
GATA3,
ERBB3,
CDK1,
PPARG,
H2BC5,
H4C4
CDC20
might
be
Predicted
miRNAs
(e.g.,
hsa-mir-548ad-5p
hsa-mir-2113)
TFs
YAP1
TBX5)
found
significantly
correlated
conclusion,
DEGs,
relative
pathways,
genes,
miRNA
help
understanding
molecular
mechanisms
underlying
complications
progression
provide
targets
biomarkers
Signal Transduction and Targeted Therapy,
Год журнала:
2023,
Номер
8(1)
Опубликована: Дек. 10, 2023
Abstract
Ferroptosis,
a
unique
modality
of
cell
death
with
mechanistic
and
morphological
differences
from
other
modes,
plays
pivotal
role
in
regulating
tumorigenesis
offers
new
opportunity
for
modulating
anticancer
drug
resistance.
Aberrant
epigenetic
modifications
posttranslational
(PTMs)
promote
resistance,
cancer
progression,
metastasis.
Accumulating
studies
indicate
that
can
transcriptionally
translationally
determine
vulnerability
to
ferroptosis
functions
as
driver
nervous
system
diseases
(NSDs),
cardiovascular
(CVDs),
liver
diseases,
lung
kidney
diseases.
In
this
review,
we
first
summarize
the
core
molecular
mechanisms
ferroptosis.
Then,
roles
processes,
including
histone
PTMs,
DNA
methylation,
noncoding
RNA
regulation
such
phosphorylation,
ubiquitination,
SUMOylation,
acetylation,
ADP-ribosylation,
are
concisely
discussed.
The
PTMs
genesis
cancers,
NSD,
CVDs,
well
application
PTM
modulators
therapy
these
then
discussed
detail.
Elucidating
mediated
by
will
facilitate
development
promising
combination
therapeutic
regimens
containing
or
PTM-targeting
agents
inducers
be
used
overcome
chemotherapeutic
resistance
could
prevent
addition,
highlight
potential
approaches
chemoresistance
halt
Molecular Biomedicine,
Год журнала:
2023,
Номер
4(1)
Опубликована: Окт. 16, 2023
Abstract
Ferroptosis,
a
regulated
form
of
cellular
death
characterized
by
the
iron-mediated
accumulation
lipid
peroxides,
provides
novel
avenue
for
delving
into
intersection
metabolism,
oxidative
stress,
and
disease
pathology.
We
have
witnessed
mounting
fascination
with
ferroptosis,
attributed
to
its
pivotal
roles
across
diverse
physiological
pathological
conditions
including
developmental
processes,
metabolic
dynamics,
oncogenic
pathways,
neurodegenerative
cascades,
traumatic
tissue
injuries.
By
unraveling
intricate
underpinnings
molecular
machinery,
contributors,
signaling
conduits,
regulatory
networks
governing
researchers
aim
bridge
gap
between
intricacies
this
unique
mode
multifaceted
implications
health
disease.
In
light
rapidly
advancing
landscape
ferroptosis
research,
we
present
comprehensive
review
aiming
at
extensive
in
origins
progress
human
diseases.
This
concludes
careful
analysis
potential
treatment
approaches
carefully
designed
either
inhibit
or
promote
ferroptosis.
Additionally,
succinctly
summarized
therapeutic
targets
compounds
that
hold
promise
targeting
within
various
facet
underscores
burgeoning
possibilities
manipulating
as
strategy.
summary,
enriched
insights
both
investigators
practitioners,
while
fostering
an
elevated
comprehension
latent
translational
utilities.
revealing
basic
processes
investigating
possibilities,
crucial
resource
scientists
medical
aiding
deep
understanding
effects
situations.
Signal Transduction and Targeted Therapy,
Год журнала:
2024,
Номер
9(1)
Опубликована: Окт. 14, 2024
Iron,
an
essential
mineral
in
the
body,
is
involved
numerous
physiological
processes,
making
maintenance
of
iron
homeostasis
crucial
for
overall
health.
Both
overload
and
deficiency
can
cause
various
disorders
human
diseases.
Ferroptosis,
a
form
cell
death
dependent
on
iron,
characterized
by
extensive
peroxidation
lipids.
Unlike
other
kinds
classical
unprogrammed
death,
ferroptosis
primarily
linked
to
disruptions
metabolism,
lipid
peroxidation,
antioxidant
system
imbalance.
Ferroptosis
regulated
through
transcription,
translation,
post-translational
modifications,
which
affect
cellular
sensitivity
ferroptosis.
Over
past
decade
or
so,
diseases
have
been
as
part
their
etiology,
including
cancers,
metabolic
disorders,
autoimmune
diseases,
central
nervous
cardiovascular
musculoskeletal
Ferroptosis-related
proteins
become
attractive
targets
many
major
that
are
currently
incurable,
some
regulators
shown
therapeutic
effects
clinical
trials
although
further
validation
potential
needed.
Therefore,
in-depth
analysis
its
molecular
mechanisms
may
offer
additional
strategies
prevention
treatment.
In
this
review,
we
discuss
significance
contribution
etiology
development
along
with
evidence
supporting
targeting
approach.
Importantly,
evaluate
recent
promising
interventions,
providing
guidance
future
targeted
treatment
therapies
against
Life Sciences,
Год журнала:
2024,
Номер
340, С. 122439 - 122439
Опубликована: Янв. 24, 2024
Myocardial
ischemia–reperfusion
injury
(MIRI),
caused
by
the
initial
interruption
and
subsequent
restoration
of
coronary
artery
blood,
results
in
further
damage
to
cardiac
function,
affecting
prognosis
patients
with
acute
myocardial
infarction.
Ferroptosis
is
an
iron-dependent,
superoxide-driven,
non-apoptotic
form
regulated
cell
death
that
involved
pathogenesis
MIRI.
characterized
accumulation
lipid
peroxides
(LOOH)
redox
disequilibrium.
Free
iron
ions
can
induce
oxidative
stress
as
a
substrate
Fenton
reaction
lipoxygenase
(LOX)
participate
inactivation
variety
antioxidants
including
CoQ10
GPX4,
destroying
balance
causing
death.
The
metabolism
amino
acid,
iron,
lipids,
associated
pathways,
considered
specific
hallmark
ferroptosis.
This
review
systematically
summarizes
latest
research
progress
on
mechanisms
ferroptosis
discusses
analyzes
therapeutic
approaches
targeting
alleviate
International Journal of Molecular Sciences,
Год журнала:
2024,
Номер
25(2), С. 897 - 897
Опубликована: Янв. 11, 2024
The
hospital
mortality
in
patients
with
ST-segment
elevation
myocardial
infarction
(STEMI)
is
about
6%
and
has
not
decreased
recent
years.
leading
cause
of
death
these
ischemia/reperfusion
(I/R)
cardiac
injury.
It
quite
obvious
that
there
an
urgent
need
to
create
new
drugs
for
the
treatment
STEMI
based
on
knowledge
pathogenesis
I/R
injury,
particular,
molecular
mechanism
ferroptosis.
In
this
study,
it
was
demonstrated
ferroptosis
involved
development
antitumor
drug-induced
cardiomyopathy,
diabetic
septic
inflammation.
There
indirect
evidence
participates
stress-induced
activation
AMPK,
PKC,
ERK1/2,
PI3K,
Akt
prevents
inhibition
HO-1
alleviates
roles
GSK-3β
NOS
regulation
require
further
study.
stimulation
Nrf2,
STAT3
TLR4
NF-κB
promotes
cardiomyocytes.
MiR-450b-5p
miR-210-3p
can
increase
tolerance
cardiomyocytes
hypoxia/reoxygenation
through
Circ_0091761
RNA,
miR-214-3p,
miR-199a-5p,
miR-208a/b,
miR-375-3p,
miR-26b-5p
miR-15a-5p
aggravate
Advanced Science,
Год журнала:
2024,
Номер
unknown
Опубликована: Окт. 28, 2024
Abstract
Myocardial
ischemia‐reperfusion
injury
(MIRI)
significantly
worsens
the
outcomes
of
patients
with
cardiovascular
diseases.
Dexmedetomidine
(Dex)
is
recognized
for
its
cardioprotective
properties,
but
related
mechanisms,
especially
regarding
metabolic
reprogramming,
have
not
been
fully
clarified.
A
total
60
heart
valve
disease
are
randomly
assigned
to
Dex
or
control
group.
Blood
samples
collected
analyze
cardiac
biomarkers
and
metabolomics.
In
vivo
vitro
rat
models
MIRI
utilized
assess
effects
on
function,
lactate
production,
mitochondrial
function.
It
found
that
postoperative
CK‐MB
cTNT
levels
lower
in
Metabolomics
reveals
regulates
reprogramming
reduces
level.
Dex‐treated
rats,
myocardial
infarction
area
reduced,
contractility
improved.
inhibits
glycolysis,
lactate,
improves
function
following
MIRI.
Lactylation
proteomics
identifies
lactylation
Malate
Dehydrogenase
2(MDH2),
thus
alleviating
injury.
Further
studies
reveal
MDH2
induces
ferroptosis,
leading
by
impairing
Mechanistic
analyses
upregulates
Nuclear
Receptor
Subfamily
3
Group
C
Member
1(NR3C1)
phosphorylation,
downregulates
Pyruvate
Kinase
4
(PDK4),
production
lactylation.
These
findings
provide
new
therapeutic
targets
mechanisms
treatment
Redox Biology,
Год журнала:
2024,
Номер
76, С. 103321 - 103321
Опубликована: Авг. 19, 2024
Cell
death
constitutes
a
critical
component
of
the
pathophysiology
cardiovascular
diseases.
A
growing
array
non-apoptotic
forms
regulated
cell
(RCD)-such
as
necroptosis,
ferroptosis,
pyroptosis,
and
cuproptosis-has
been
identified
is
intimately
linked
to
various
conditions.
These
RCD
are
governed
by
genetically
programmed
mechanisms
within
cell,
with
epigenetic
modifications
being
common
crucial
regulatory
method.
Such
include
DNA
methylation,
RNA
histone
acetylation,
non-coding
RNAs.
This
review
recaps
roles
modifications,
RNAs
in
diseases,
well
which
regulate
key
proteins
involved
death.
Furthermore,
we
systematically
catalog
existing
pharmacological
agents
targeting
novel
their
action
article
aims
underscore
pivotal
role
precisely
regulating
specific
pathways
thus
offering
potential
new
therapeutic
avenues
that
may
prove
more
effective
safer
than
traditional
treatments.
Cellular & Molecular Biology Letters,
Год журнала:
2024,
Номер
29(1)
Опубликована: Апрель 1, 2024
Abstract
Background
Small
extracellular
vesicles
(sEV)
are
closely
associated
with
the
development
and
metastasis
of
many
types
mammalian
cancer.
Glycoconjugates
highly
expressed
on
sEV
play
important
roles
in
biogenesis
their
interaction
other
cells.
However,
study
vesicular
glycoconjugates
far
behind
proteins
nucleic
acids.
Especially,
functions
sialic
acids
which
terminal
components
glycoconjugates,
poorly
understood
sEV.
Methods
Sialic
acid
levels
from
plasma
bladder
cancer
cells
were
determined
by
ELISA
lectin
blotting.
Effects
sialylation
uptake
flow
cytometry.
Vesicular
glycoproteins
bearing
responsible
for
was
identified
proteomics
density
gradient
centrifugation,
site-specific
assayed
N
-glycosylation
site
mutation.
integrin
β1
pro-metastatic
function
vivo
explored
using
Balb/c
nu/nu
mice.
Results
(1)
Increased
observed
malignant
(2)
Elimination
impaired
recipient
(3)
to
a
key
role
uptake.
(4)
Desialylation
hybrid
domain
inhibited
its
binding
matrix
fibronectin,
reduced
entry
into
(5)
Sialylation
affected
Conclusions
Taken
together,
our
findings
indicate
functional
reprogramming
plasticity
surrounding
normal
epithelial
Graphical
Cellular & Molecular Biology Letters,
Год журнала:
2023,
Номер
28(1)
Опубликована: Дек. 2, 2023
Metabolic
states
greatly
influence
functioning
and
differentiation
of
immune
cells.
Regulating
the
metabolism
cells
can
effectively
modulate
host
response.
Itaconate,
an
intermediate
metabolite
derived
from
tricarboxylic
acid
(TCA)
cycle
cells,
is
produced
through
decarboxylation
cis-aconitate
by
decarboxylase
in
mitochondria.
The
gene
encoding
known
as
response
1
(IRG1).
In
to
external
proinflammatory
stimulation,
macrophages
exhibit
high
IRG1
expression.
IRG1/itaconate
inhibits
succinate
dehydrogenase
activity,
thus
influencing
metabolic
status
macrophages.
Therefore,
itaconate
serves
a
link
between
macrophage
metabolism,
oxidative
stress,
response,
ultimately
regulating
function.
Studies
have
demonstrated
that
acts
on
various
signaling
pathways,
including
Keap1-nuclear
factor
E2-related
2-ARE
ATF3-IκBζ
axis,
stimulator
interferon
genes
(STING)
pathway
exert
antiinflammatory
antioxidant
effects.
Furthermore,
several
studies
reported
affects
cancer
occurrence
development
diverse
pathways.
this
paper,
we
provide
comprehensive
review
role
its
derivatives
regulation
functions.
By
furthering
our
understanding
itaconate,
intend
shed
light
potential
for
treating
inflammatory
diseases
offer
new
insights
field.