Host-microbe
associations
underlie
many
key
processes
of
host
development,
immunity,
and
life
history.
Yet,
none
the
current
research
on
central
model
species
Caenorhabditis
elegans
considers
worm's
natural
microbiome.
Instead,
almost
all
laboratories
exclusively
use
canonical
strain
N2
derived
mutants,
maintained
through
routine
bleach
sterilization
in
monoxenic
cultures
with
an
E.
coli
as
food.
Here,
we
characterize
for
first
time
native
microbiome
C.
assess
its
influence
nematode
history
characteristics.
Nematodes
sampled
directly
from
their
habitats
carry
a
species-rich
bacterial
community,
dominated
by
Proteobacteria
such
Enterobacteriaceae
members
genera
Pseudomonas,
Stenotrophomonas,
Ochrobactrum,
Sphingomonas.
The
is
distinct
that
environment
congeneric
remanei.
Exposure
to
experimental
revealed
composition
influenced
developmental
stage
genotype.
These
experiments
also
showed
microbes
enhance
fitness
under
standard
stressful
conditions
(e.g.,
high
temperature
either
low
or
osmolarity).
Taking
advantage
nematode's
transparency,
further
demonstrate
several
are
able
enter
gut
Ochrobactrum
isolate
even
seems
be
persist
intestines
conditions.
Moreover,
three
Pseudomonas
isolates
produce
anti-fungal
effect
vitro
which
show
can
contribute
defense
against
fungal
pathogens
vivo.
This
systematic
analysis
reveals
community
associated
elegans,
likely
importance
our
understanding
biology.
information
acquired
microbial
now
available
work
establishes
tractable
in-depth
dissection
host-microbiome
interactions.
Physiological Reviews,
Год журнала:
2019,
Номер
99(4), С. 1877 - 2013
Опубликована: Авг. 28, 2019
The
importance
of
the
gut-brain
axis
in
maintaining
homeostasis
has
long
been
appreciated.
However,
past
15
yr
have
seen
emergence
microbiota
(the
trillions
microorganisms
within
and
on
our
bodies)
as
one
key
regulators
function
led
to
appreciation
a
distinct
microbiota-gut-brain
axis.
This
is
gaining
ever
more
traction
fields
investigating
biological
physiological
basis
psychiatric,
neurodevelopmental,
age-related,
neurodegenerative
disorders.
brain
communicate
with
each
other
via
various
routes
including
immune
system,
tryptophan
metabolism,
vagus
nerve
enteric
nervous
involving
microbial
metabolites
such
short-chain
fatty
acids,
branched
chain
amino
peptidoglycans.
Many
factors
can
influence
composition
early
life,
infection,
mode
birth
delivery,
use
antibiotic
medications,
nature
nutritional
provision,
environmental
stressors,
host
genetics.
At
extreme
diversity
diminishes
aging.
Stress,
particular,
significantly
impact
at
all
stages
life.
Much
recent
work
implicated
gut
many
conditions
autism,
anxiety,
obesity,
schizophrenia,
Parkinson’s
disease,
Alzheimer’s
disease.
Animal
models
paramount
linking
regulation
fundamental
neural
processes,
neurogenesis
myelination,
microbiome
activation
microglia.
Moreover,
translational
human
studies
are
ongoing
will
greatly
enhance
field.
Future
focus
understanding
mechanisms
underlying
attempt
elucidate
microbial-based
intervention
therapeutic
strategies
for
neuropsychiatric
Microbiology and Molecular Biology Reviews,
Год журнала:
2017,
Номер
81(4)
Опубликована: Ноя. 8, 2017
SUMMARY
The
human
gut
microbiota
is
engaged
in
multiple
interactions
affecting
host
health
during
the
host's
entire
life
span.
Microbes
colonize
neonatal
immediately
following
birth.
establishment
and
interactive
development
of
this
early
are
believed
to
be
(at
least
partially)
driven
modulated
by
specific
compounds
present
milk.
It
has
been
shown
that
certain
genomes
infant
commensals,
particular
those
bifidobacterial
species,
genetically
adapted
utilize
glycans
secretory
fluid,
thus
representing
a
very
intriguing
example
host-microbe
coevolution,
where
both
partners
benefit.
In
recent
years,
various
metagenomic
studies
have
tried
dissect
composition
functionality
microbiome
explore
distribution
across
different
ecological
niches
biogeography
corresponding
microbial
consortia,
including
bacteria
viruses,
healthy
ill
subjects.
Such
analyses
linked
features
microbiota/microbiome,
such
as
reduced
diversity
or
aberrant
composition,
intestinal
illnesses
infants
disease
states
manifested
at
later
stages
life,
asthma,
inflammatory
bowel
disease,
metabolic
disorders.
Thus,
growing
number
reported
on
how
composition/development
may
affect
risk
factors
related
adult
conditions.
This
concept
fueled
strategies
shape
based
functional
food
products.
review,
we
describe
microbiota,
mechanisms
drive
its
consortia
molded
natural
artificial
interventions.
Finally,
discuss
relevance
key
players
bifidobacteria,
with
respect
their
role
disease.
Since
the
colonization
of
land
by
ancestral
plant
lineages
450
million
years
ago,
plants
and
their
associated
microbes
have
been
interacting
with
each
other,
forming
an
assemblage
species
that
is
often
referred
to
as
a
"holobiont."
Selective
pressure
acting
on
holobiont
components
has
likely
shaped
plant-associated
microbial
communities
selected
for
host-adapted
microorganisms
impact
fitness.
However,
high
densities
detected
tissues,
together
fast
generation
time
more
ancient
origin
compared
host,
suggest
microbe-microbe
interactions
are
also
important
selective
forces
sculpting
complex
assemblages
in
phyllosphere,
rhizosphere,
endosphere
compartments.
Reductionist
approaches
conducted
under
laboratory
conditions
critical
decipher
strategies
used
specific
cooperate
compete
within
or
outside
tissues.
Nonetheless,
our
understanding
these
shaping
communities,
along
relevance
host
health
natural
context,
remains
sparse.
Using
examples
obtained
from
reductionist
community-level
approaches,
we
discuss
fundamental
role
(prokaryotes
micro-eukaryotes)
community
structure
health.
We
provide
conceptual
framework
illustrating
among
microbiota
members
establishment
maintenance
host-microbial
homeostasis.
BDJ,
Год журнала:
2016,
Номер
221(10), С. 657 - 666
Опубликована: Ноя. 1, 2016
For
millions
of
years,
our
resident
microbes
have
coevolved
and
coexisted
with
us
in
a
mostly
harmonious
symbiotic
relationship.
We
are
not
distinct
entities
from
microbiome,
but
together
we
form
'superorganism'
or
holobiont,
the
microbiome
playing
significant
role
physiology
health.
The
mouth
houses
second
most
diverse
microbial
community
body,
harbouring
over
700
species
bacteria
that
colonise
hard
surfaces
teeth
soft
tissues
oral
mucosa.
Through
recent
advances
technology,
started
to
unravel
complexities
gained
new
insights
into
its
during
both
health
disease.
Perturbations
through
modern-day
lifestyles
can
detrimental
consequences
for
general
In
dysbiosis,
finely-tuned
equilibrium
ecosystem
is
disrupted,
allowing
disease-promoting
manifest
cause
conditions
such
as
caries,
gingivitis
periodontitis.
practitioners
patients
alike,
promoting
balanced
therefore
important
effectively
maintain
restore
This
article
aims
give
an
update
on
current
knowledge
disease
discuss
implications
healthcare.
Neurobiology of Stress,
Год журнала:
2017,
Номер
7, С. 124 - 136
Опубликована: Март 19, 2017
The
importance
of
the
gut–brain
axis
in
regulating
stress-related
responses
has
long
been
appreciated.
More
recently,
microbiota
emerged
as
a
key
player
control
this
axis,
especially
during
conditions
stress
provoked
by
real
or
perceived
homeostatic
challenge.
Diet
is
one
most
important
modifying
factors
microbiota-gut-brain
axis.
routes
communication
between
and
brain
are
slowly
being
unravelled,
include
vagus
nerve,
gut
hormone
signaling,
immune
system,
tryptophan
metabolism,
microbial
metabolites
such
short
chain
fatty
acids.
early
life
shaping
later
health
outcomes
also
emerging.
Results
from
preclinical
studies
indicate
that
alterations
composition
way
antibiotic
exposure,
lack
breastfeeding,
birth
Caesarean
section,
infection,
other
environmental
influences
-
coupled
with
influence
host
genetics
can
result
long-term
modulation
physiology
behaviour.
implicated
variety
including
anxiety,
depression
irritable
bowel
syndrome,
although
largely
based
on
animal
correlative
analysis
patient
populations.
Additional
research
humans
sorely
needed
to
reveal
relative
impact
causal
contribution
microbiome
disorders.
In
regard,
concept
psychobiotics
developed
refined
encompass
methods
targeting
order
positively
mental
outcomes.
At
2016
Neurobiology
Stress
Workshop
Newport
Beach,
CA,
group
experts
presented
symposium
“The
Microbiome:
Development,
Stress,
Disease”.
This
report
summarizes
builds
upon
some
concepts
within
context
how
might
neurobiology
stress.
Nature Communications,
Год журнала:
2016,
Номер
7(1)
Опубликована: Июль 12, 2016
Bacteria
living
on
and
in
leaves
roots
influence
many
aspects
of
plant
health,
so
the
extent
a
plant's
genetic
control
over
its
microbiota
is
great
interest
to
crop
breeders
evolutionary
biologists.
Laboratory-based
studies,
because
they
poorly
simulate
true
environmental
heterogeneity,
may
misestimate
or
totally
miss
certain
host
genes
microbiome.
Here
we
report
large-scale
field
experiment
disentangle
effects
genotype,
environment,
age
year
harvest
bacterial
communities
associated
with
Boechera
stricta
(Brassicaceae),
perennial
wild
mustard.
Host
microbiome
evident
but
not
roots,
varies
substantially
among
sites.
Microbiome
composition
also
shifts
as
plants
age.
Furthermore,
large
proportion
leaf
groups
are
shared
suggesting
inoculation
from
soil.
Our
results
demonstrate
how
genotype-by-environment
interactions
contribute
complexity
assembly
natural
environments.
Annual Review of Microbiology,
Год журнала:
2016,
Номер
70(1), С. 317 - 340
Опубликована: Авг. 2, 2016
Corals
are
fundamental
ecosystem
engineers,
creating
large,
intricate
reefs
that
support
diverse
and
abundant
marine
life.
At
the
core
of
a
healthy
coral
animal
is
dynamic
relationship
with
microorganisms,
including
mutually
beneficial
symbiosis
photosynthetic
dinoflagellates
(Symbiodinium
spp.)
enduring
partnerships
an
array
bacterial,
archaeal,
fungal,
protistan,
viral
associates,
collectively
termed
holobiont.
The
combined
genomes
this
holobiont
form
hologenome,
genomic
interactions
within
hologenome
ultimately
define
phenotype.
Here
we
integrate
contemporary
scientific
knowledge
regarding
ecological,
host-specific,
environmental
forces
shaping
diversity,
specificity,
distribution
microbial
symbionts
holobiont,
explore
physiological
pathways
contribute
to
fitness,
describe
potential
mechanisms
for
homeostasis.
Understanding
role
microbiome
in
resilience,
acclimation,
adaptation
new
frontier
reef
science
will
require
large-scale
collaborative
research
efforts.