PubMed,
Journal Year:
2023,
Volume and Issue:
13(12), P. 5785 - 5804
Published: Jan. 1, 2023
The
human
microbiome,
an
intricate
ecological
network,
has
garnered
significant
attention
due
to
its
potential
implications
in
oncogenesis.
This
paper
delves
into
the
multifaceted
relationships
between
metabolites,
and
cancer
development,
emphasizing
intestinal
tract
as
primary
microbial
habitat.
Highlighting
causative
associations
disturbances
progression,
we
underscore
role
of
specific
bacterial
strains
various
cancers,
such
stomach
colorectal
cancer.
Traditional
causality
assessment
methods,
like
randomized
controlled
trials
(RCTs),
have
limitations.
Therefore,
advocate
using
Mendelian
Randomization
(MR)
a
powerful
alternative
study
causal
relationships,
leveraging
genetic
variants
instrumental
variables.
With
proliferation
genome-wide
association
studies,
MR
harnesses
variations
infer
causality,
which
is
especially
beneficial
when
addressing
confounders
diet
lifestyle
that
can
skew
research.
We
systematically
review
MR's
application
understanding
microbiome-cancer
nexus,
strengths
challenges.
While
offers
unique
perspective
on
it
faces
hurdles
horizontal
pleiotropy
weak
variable
bias.
Integrating
with
multi-omics
data,
encompassing
genomics,
transcriptomics,
proteomics,
metabolomics,
holds
promise
for
future
research,
potentially
heralding
groundbreaking
discoveries
microbiology
genetics.
comprehensive
underscores
critical
microbiome
oncogenesis
champions
indispensable
tool
advancing
our
this
domain.
Cancer Medicine,
Journal Year:
2023,
Volume and Issue:
12(9), P. 10393 - 10405
Published: March 7, 2023
Previous
studies
have
linked
gut
microbiota
with
cancer
etiology,
but
the
associations
for
specific
are
causal
or
owing
to
bias
remain
be
elucidated.We
performed
a
two-sample
Mendelian
randomization
(MR)
analysis
assess
effect
of
on
risk.
Five
common
cancers,
including
breast,
endometrial,
lung,
ovarian,
and
prostate
as
well
their
subtypes
(sample
sizes
ranging
from
27,209
228,951)
were
included
outcomes.
Genetic
information
was
obtained
genome-wide
association
study
(GWAS)
comprising
18,340
participants.
In
univariable
MR
(UVMR)
analysis,
inverse
variance
weighted
(IVW)
method
conducted
primary
method,
robust
adjusted
profile
scores,
median,
Egger
used
supplementary
methods
inference.
Sensitivity
analyses
Cochran
Q
test,
intercept
leave-one-out
verify
robustness
results.
Multivariable
(MVMR)
evaluate
direct
effects
risk
cancers.UVMR
detected
higher
abundance
genus
Sellimonas
predicted
estrogen
receptor-positive
breast
(OR
=
1.09,
95%
CI
1.05-1.14,
p
2.01
×
10-5
),
class
Alphaproteobacteria
associated
lower
0.84,
0.75-0.93,
1.11
10-3
).
found
little
evidence
in
current
study.
MVMR
further
confirmed
that
exerted
cancer,
while
driven
by
factors
cancer.Our
implies
involvement
development,
which
provides
novel
potential
target
screening
prevention,
might
an
implication
future
functional
analysis.
Journal of Translational Medicine,
Journal Year:
2024,
Volume and Issue:
22(1)
Published: Jan. 23, 2024
Abstract
Background
Recent
research
increasingly
highlights
a
strong
correlation
between
gut
microbiota
and
the
risk
of
gastrointestinal
diseases.
However,
whether
this
relationship
is
causal
or
merely
coincidental
remains
uncertain.
To
address
this,
Mendelian
randomization
(MR)
analysis
was
undertaken
to
explore
connections
prevalent
Methods
Genome-wide
association
study
(GWAS)
summary
statistics
for
microbiota,
encompassing
diverse
range
211
taxa
(131
genera,
35
families,
20
orders,
16
classes,
9
phyla),
were
sourced
from
comprehensive
MiBioGen
study.
Genetic
associations
with
22
diseases
gathered
UK
Biobank,
FinnGen
study,
various
extensive
GWAS
studies.
MR
meticulously
conducted
assess
genetically
predicted
these
validate
reliability
our
findings,
sensitivity
analyses
tests
heterogeneity
systematically
performed.
Results
The
yielded
significant
evidence
251
relationships
This
included
98
upper
diseases,
81
lower
54
hepatobiliary
18
pancreatic
Notably,
particularly
evident
in
belonging
genera
Ruminococcus
Eubacterium
.
Further
reinforced
robustness
results.
Conclusions
findings
indicate
potential
genetic
predisposition
linking
These
insights
pave
way
designing
future
clinical
trials
focusing
on
microbiome-related
interventions,
including
use
microbiome-dependent
metabolites,
potentially
treat
manage
their
associated
factors.
Abstract
Recent
advances
in
understanding
the
modulatory
functions
of
gut
and
microbiota
on
human
diseases
facilitated
our
focused
attention
contribution
to
pathophysiological
alterations
many
extraintestinal
organs,
including
liver,
heart,
brain,
lungs,
kidneys,
bone,
skin,
reproductive,
endocrine
systems.
In
this
review,
we
applied
“gut–X
axis”
concept
describe
linkages
between
other
organs
discussed
latest
findings
related
axis,”
underlying
mechanisms
potential
clinical
intervention
strategies.
Translational Psychiatry,
Journal Year:
2024,
Volume and Issue:
14(1)
Published: Jan. 31, 2024
Abstract
Background
The
causal
effects
of
gut
microbiome
and
the
development
posttraumatic
stress
disorder
(PTSD)
are
still
unknown.
This
study
aimed
to
clarify
their
potential
association
using
mendelian
randomization
(MR).
Methods
summary-level
statistics
for
were
retrieved
from
a
genome-wide
(GWAS)
MiBioGen
consortium.
As
PTSD,
Freeze
2
datasets
originated
Psychiatric
Genomics
Consortium
Posttraumatic
Stress
Disorder
Working
Group
(PGC-PTSD),
replicated
obtained
FinnGen
Single
nucleotide
polymorphisms
meeting
MR
assumptions
selected
as
instrumental
variables.
inverse
variance
weighting
(IVW)
method
was
employed
main
approach,
supplemented
by
sensitivity
analyses
evaluate
pleiotropy
heterogeneity
ensure
robustness
results.
We
also
performed
reverse
explore
PTSD’s
on
relative
abundances
specific
features
microbiome.
Results
In
PGC-PTSD,
eight
bacterial
traits
revealed
between
PTSD
(IVW,
all
P
<
0.05).
addition,
Genus.Dorea
genus.Sellimonas
in
datasets,
which
occurrence
PTSD.
further
supported
IVW
findings,
providing
additional
evidence
reliability.
Conclusion
Our
provides
impact
microbiomes
shedding
new
light
understanding
dysfunctional
gut-brain
axis
this
disorder.
findings
present
novel
call
investigations
confirm
links,
well
illuminate
underlying
mechanisms.
PLoS Medicine,
Journal Year:
2024,
Volume and Issue:
21(3), P. e1004362 - e1004362
Published: March 15, 2024
Background
The
incidence
of
prostate
cancer
is
increasing
in
older
males
globally.
Age,
ethnicity,
and
family
history
are
identified
as
the
well-known
risk
factors
for
cancer,
but
few
modifiable
have
been
firmly
established.
objective
this
study
was
to
identify
evaluate
various
modifying
reported
meta-analyses
prospective
observational
studies
mendelian
randomization
(MR)
analyses.
Methods
findings
We
searched
PubMed,
Embase,
Web
Science
from
inception
January
10,
2022,
updated
on
September
9,
2023,
MR
cancer.
Eligibility
criteria
were
(1)
including
or
that
declared
outcome-free
at
baseline;
(2)
evaluating
any
category
associated
with
incidence;
(3)
providing
effect
estimates
further
data
synthesis.
Similar
applied
studies.
Meta-analysis
repeated
using
random-effects
inverse-variance
model
DerSimonian—Laird
method.
Quality
assessment
then
conducted
included
AMSTAR-2
tool
STROBE-MR
assumption
evaluation.
Subsequent
evidence
grading
significant
associations
contained
sample
size,
P
values
95%
confidence
intervals,
prediction
heterogeneity,
publication
bias,
assigning
4
grades
(convincing,
highly
suggestive,
weak).
Significant
graded
robust,
probable,
insufficient
considering
concordance
directions.
Finally,
92
selected
411
64
118
after
excluding
overlapping
outdated
which
published
earlier
fewer
participants
instrument
variables
same
exposure.
In
total,
123
(45
78
null)
145
causal
(55
90
categorized
into
lifestyle;
diet
nutrition;
anthropometric
indices;
biomarkers;
clinical
variables,
diseases,
treatments;
environmental
factors.
Concerning
associations,
there
5
36
weak
meta-analyses,
10
24
17
Twenty-six
between
identified,
consistent
effects
found
physical
activity
(PA)
(occupational
PA
meta:
OR
=
0.87,
CI:
0.80,
0.94;
accelerator-measured
MR:
0.49,
0.33,
0.72),
height
(meta:
1.09,
1.06,
1.12;
1.07,
1.01,
1.15,
aggressive
cancer),
smoking
(current
0.74,
0.68,
0.80;
initiation
0.91,
0.86,
0.97).
Methodological
limitation
could
be
expanded
by
more
indices.
Conclusions
large-scale
study,
we
summarized
provided
comparisons
meta-analysis
genetically
estimated
causality
absence
convincing
based
existing
literature,
no
robust
some
observed
height,
activity,
smoking.
Cancer Management and Research,
Journal Year:
2025,
Volume and Issue:
Volume 17, P. 171 - 192
Published: Jan. 1, 2025
Cancer
immunotherapy
has
transformed
cancer
treatment
in
recent
years,
with
immune
checkpoint
inhibitors
(ICIs)
emerging
as
a
key
therapeutic
approach.
ICIs
work
by
inhibiting
the
mechanisms
that
allow
tumors
to
evade
detection.
Although
have
shown
promising
results,
especially
solid
tumors,
patient
responses
vary
widely
due
multiple
intrinsic
and
extrinsic
factors
within
tumor
microenvironment.
Emerging
evidence
suggests
gut
microbiota
plays
pivotal
role
modulating
at
site
may
even
influence
outcomes
patients
receiving
ICIs.
This
review
explores
complex
interactions
between
microenvironment,
examining
how
these
could
impact
effectiveness
of
ICI
therapy.
Furthermore,
we
discuss
dysbiosis,
an
imbalance
composition,
contribute
resistance
ICIs,
highlight
microbiota-targeted
strategies
potentially
overcome
this
challenge.
Additionally,
studies
investigating
diagnostic
potential
profiles
patients,
considering
microbial
markers
might
aid
early
detection
stratification
By
integrating
insights
from
preclinical
clinical
studies,
aim
shed
light
on
microbiome
modulation
adjunct
tool,
paving
way
for
personalized
approaches
optimize
outcomes.
BMC Genomics,
Journal Year:
2024,
Volume and Issue:
25(1)
Published: May 14, 2024
Gut
microbiota(GM)
have
been
proven
associated
with
lots
of
gastrointestinal
diseases,
but
its
causal
relationship
Gastroesophageal
reflux
disease(GERD)
and
Barrett's
esophagus(BE)
hasn't
explored.
We
aimed
to
uncover
the
relation
between
GM
GERD/BE
potential
mediators
by
utilizing
Mendelian
Randomization(MR)
analysis.
Frontiers in Cellular and Infection Microbiology,
Journal Year:
2023,
Volume and Issue:
13
Published: Sept. 27, 2023
The
gut
microbiota
has
been
found
to
be
associated
with
the
risk
of
lung
cancer.
However,
its
causal
relationship
various
types
cancer
remains
unclear.We
conducted
a
Mendelian
randomization
(MR)
study
using
largest
genome-wide
association
analysis
data
date
from
MiBioGen
consortium,
pooled
statistics
for
Transdisciplinary
Research
in
Cancer
Lung,
International
Lung
Consortium,
and
FinnGen
Consortium
R7
release
data.
Inverse
variance
weighted,
weighted
model,
MR-Egger
regression,
median
were
adapted
assess
between
Sensitivity
was
used
test
presence
pleiotropy
heterogeneity
instrumental
variables.
A
reverse
MR
performed
on
these
bacteria
determine
their
potential
role
causing
Multivariable
(MVMR)
direct
impact
cancer.Using
IVW
as
primary
analytical
method,
we
identified
total
40
groups
associations
subtypes
cancer,
which
10
adenocarcinoma,
9
squamous
cell
11
small
After
performing
FDR
correction,
further
that
there
still
significant
Peptococcaceae
adenocarcinoma.
analyses
demonstrated
robustness
results,
no
or
found.Our
results
confirm
specific
providing
new
insights
into
mediating
development
Frontiers in Microbiology,
Journal Year:
2023,
Volume and Issue:
14
Published: July 24, 2023
Increasing
evidence
from
observational
studies
and
clinical
experimentation
has
indicated
a
link
between
the
gut
microbiotas
(GMs)
polycystic
ovary
syndrome
(PCOS),
however,
causality
direction
of
microbiome
PCOS
remains
to
be
established.
We
conducted
comprehensive
search
four
databases-PubMed,
Cochrane
Library,
Web
Science,
Embase
up
until
June
1,
2023,
subjected
results
meta-analysis.
In
this
study,
bidirectional
two-sample
Mendelian
randomization
(MR)
analysis
was
employed
investigate
impact
microbiota
on
(PCOS).
The
genome-wide
association
study
(GWAS)
data
for
comprised
113,238
samples,
while
GWAS
were
derived
MiBioGen
consortium,
encompassing
total
sample
size
18,340
individuals.
As
largest
dataset
its
kind,
represents
most
meta-analysis
concerning
composition
date.
Single
nucleotide
polymorphisms
(SNPs)
selected
as
instrumental
variables
at
various
taxonomic
levels,
including
Phylum,
Class,
Order,
Family,
Genus.
causal
associations
exposures
outcomes
assessed
using
established
MR
methods.
To
correct
multiple
testing,
false
discovery
rate
(FDR)
method
applied.
reliability
potential
biases
evaluated
through
sensitivity
F-statistics.
incorporated
20
that
met
criteria,
revealing
close
specific
species.
per
our
analysis,
we
identified
six
At
genus
level,
Actinomyces
(ORIVW
=
1.369,
FDR
0.040),
Streptococcus
1.548,
0.027),
Ruminococcaceae
UCG-005
1.488,
0.028)
risk
factors
PCOS.
Conversely,
Candidatus
Soleaferrea
0.723,
Dorea
0.580,
0.032),
UCG-011
0.732,
0.030)
found
protective
against
Furthermore,
MR-PRESSO
global
test
MR-Egger
regression
not
affected
by
horizontal
pleiotropy
(p
>
0.05).
Finally,
leave-one-out
corroborated
robustness
findings.
Both
indicates
there
is
relationship
PCOS,
which
may
contribute
providing
novel
insights
development
new
preventive
therapeutic
strategies