Flow Cytometry: The Next Revolution DOI Creative Commons
J. Paul Robinson, Raluca Ostafe, Sharath Narayana Iyengar

et al.

Cells, Journal Year: 2023, Volume and Issue: 12(14), P. 1875 - 1875

Published: July 17, 2023

Unmasking the subtleties of immune system requires both a comprehensive knowledge base and ability to interrogate that with intimate sensitivity. That task, considerable extent, has been handled by an iterative expansion in flow cytometry methods, technological capability also accompanying advances informatics. As field fluorescence-based cytomics matured, it reached barrier at around 30 parameter analyses, which stalled until spectral created fundamental transformation will likely lead potential 100 simultaneous analyses within few years. The advance informatics now become watershed moment for as competes mature systematic approaches such genomics proteomics, allowing take seat multi-omics table. In addition, recent try combine speed systems other detection addition fluorescence alone, make flow-based instruments even more indispensable any biological laboratory. This paper outlines current cell analysis discusses traditional microfluidic sorting well next-generation instruments, provides early look future opportunities are arise.

Language: Английский

Single-cell chromatin accessibility landscape identifies tissue repair program in human regulatory T cells DOI Creative Commons
Michael Delacher, Malte Simon, Lieke Sanderink

et al.

Immunity, Journal Year: 2021, Volume and Issue: 54(4), P. 702 - 720.e17

Published: March 30, 2021

Murine regulatory T (Treg) cells in tissues promote tissue homeostasis and regeneration. We sought to identify features that characterize human Treg with these functions healthy tissues. Single-cell chromatin accessibility profiles of murine defined a conserved, microbiota-independent tissue-repair signature prevailing footprint the transcription factor BATF. This signature, combined gene expression profiling TCR fate mapping, identified population tissue-like peripheral blood expressed BATF, chemokine receptor CCR8 HLA-DR. Human BATF+CCR8+ from normal skin adipose shared nonlymphoid follicular helper-like (Tfh-like) cells, induction Tfh-like differentiation program naive partially recapitulated regenerative characteristics, including wound healing potential. share tumor-resident highlighting importance understanding context-specific cells.

Language: Английский

Citations

112

Flow Cytometry: Principles, Applications and Recent Advances DOI
Sonal M. Manohar, Prachi Shah,

Anusree Nair

et al.

Bioanalysis, Journal Year: 2021, Volume and Issue: 13(3), P. 181 - 198

Published: Feb. 1, 2021

Flow cytometry (FCM) is a sophisticated technique that works on the principle of light scattering and fluorescence emission by specific fluorescent probe-labeled cells as they pass through laser beam. It offers several unique advantages it allows fast, relatively quantitative, multiparametric analysis cell populations at single level. In addition, also enables physical sorting to separate subpopulations based different parameters. this constantly evolving field, innovative technologies such imaging FCM, mass Raman FCM are being developed in order address limitations traditional FCM. This review explains general principles, main applications recent advances field

Language: Английский

Citations

105

A compendium of single extracellular vesicle flow cytometry DOI Creative Commons
Joshua A Welsh, Ger J. A. Arkesteijn,

Michel Bremer

et al.

Journal of Extracellular Vesicles, Journal Year: 2023, Volume and Issue: 12(2)

Published: Feb. 1, 2023

Flow cytometry (FCM) offers a multiparametric technology capable of characterizing single extracellular vesicles (EVs). However, most flow cytometers are designed to detect cells, which larger than EVs. Whereas cells exceed the background noise, signals originating from EVs partly overlap with thereby making more difficult cells. This technical mismatch together complexity EV-containing fluids causes limitations and challenges conducting, interpreting reproducing EV FCM experiments. To address overcome these challenges, researchers International Society for Extracellular Vesicles (ISEV), Advancement Cytometry (ISAC), on Thrombosis Haemostasis (ISTH) joined forces initiated working group. improve interpretation, reporting, reproducibility future data, group published an ISEV position manuscript outlining framework minimum information that should be reported about experiment (MIFlowCyt-EV). contains limited information. Therefore, goal this compendium is provide necessary design conduct reproducible EVs, interaction between light hardware, experimental preanalytical procedures, sample preparation, assay controls, instrument data acquisition calibration, characterization, reporting. Although focuses many concepts explanations could also applied detection other particles within size range, such as bacteria, lipoprotein particles, milk fat globules, viruses.

Language: Английский

Citations

104

Precise reconstruction of the TME using bulk RNA-seq and a machine learning algorithm trained on artificial transcriptomes DOI Creative Commons

Aleksandr Zaitsev,

Maksim Chelushkin,

Daniiar Dyikanov

et al.

Cancer Cell, Journal Year: 2022, Volume and Issue: 40(8), P. 879 - 894.e16

Published: Aug. 1, 2022

Language: Английский

Citations

86

Flow Cytometry: The Next Revolution DOI Creative Commons
J. Paul Robinson, Raluca Ostafe, Sharath Narayana Iyengar

et al.

Cells, Journal Year: 2023, Volume and Issue: 12(14), P. 1875 - 1875

Published: July 17, 2023

Unmasking the subtleties of immune system requires both a comprehensive knowledge base and ability to interrogate that with intimate sensitivity. That task, considerable extent, has been handled by an iterative expansion in flow cytometry methods, technological capability also accompanying advances informatics. As field fluorescence-based cytomics matured, it reached barrier at around 30 parameter analyses, which stalled until spectral created fundamental transformation will likely lead potential 100 simultaneous analyses within few years. The advance informatics now become watershed moment for as competes mature systematic approaches such genomics proteomics, allowing take seat multi-omics table. In addition, recent try combine speed systems other detection addition fluorescence alone, make flow-based instruments even more indispensable any biological laboratory. This paper outlines current cell analysis discusses traditional microfluidic sorting well next-generation instruments, provides early look future opportunities are arise.

Language: Английский

Citations

82