Bioactive phytocompounds against specific target proteins of Borrelia recurrentis responsible for louse‐borne relapsing fever: Genomics and structural bioinformatics evidence DOI
Soumya Basu, Reetika Debroy, Hithesh Kumar

et al.

Medical and Veterinary Entomology, Journal Year: 2022, Volume and Issue: 37(2), P. 213 - 218

Published: Nov. 15, 2022

Louse-borne relapsing fever (LBRF) with high untreated mortality caused by spirochete Borrelia recurrentis is predominantly endemic to Sub-Saharan Africa and has re-emerged in parts of Eastern Europe, Asia Latin America due population migrations. Despite subtractive evolution lice-borne pathogenic spp. from tick-borne species, there been no comprehensive report on conservation protein targets across tick nor exploration phytocompounds that are toxic against lice. From the 19 available whole genomes including B. recurrentis, burgdorferi, hermsii, parkeri miyamotoi, seven drug (>80% domain identity) viz. 30 S ribosomal subunit proteins (RSP) S3, S7, S8, S14, S19, penicillin-binding protein-2 50 RSP L16 were deciphered through multiple sequence alignments. Twelve (hydroxy-tyrosol, baicalein, cis-2-decanoic acid, morin, oenin, rosemarinic kaempferol, piceatannol, rottlerin, luteolin, fisetin monolaurin) previously explored Lyme disease burgdorferi when targeted LBRF-causing revealed multi-target affinity (2%-20% higher than conventional antibiotics) molecular docking. However, based binding all target proteins, stable coarse-grained dynamics (fluctuations <1 Å) safe pharmacological profile, luteolin was prioritized. The study encourages experimental evaluation potent similar protocols for investigating other emerging vector-borne diseases.

Language: Английский

Impact of PmrB mutations on clinical Klebsiella pneumoniae with variable colistin‐susceptibilities: Structural insights and potent therapeutic solutions DOI
Soumya Basu, Balaji Veeraraghavan, Anand Anbarasu

et al.

Chemical Biology & Drug Design, Journal Year: 2023, Volume and Issue: 103(1)

Published: Oct. 24, 2023

Abstract Carbapenem‐resistant Klebsiella pneumoniae (CRKP) infections continue to impose high morbidity threats hospitalized patients worldwide, limiting therapeutic options last‐resort antibiotics like colistin. However, the dynamic genomic landscape of colistin‐resistant K. (COLR‐Kp) invoked ardent exploration underlying molecular signatures for propositions/designs. We unveiled structural impact widespread and emerging PmrB mutations involved in colistin resistance (COLR) . In present study, clinical isolates expressed variable susceptibilities (>0.5 μg/mL resistant ≤0.25 susceptible) despite such as T157P, G207D T246A. The protein sequences extracted from in‐house sequenced genomes were used model mutant proteins analyze alterations. contrasted based on dynamics simulation trajectories, free‐energy landscapes flexibility profiles. altered backbone flexibilities can be an essential factor selection by COLR provide clues deal with mutants. Furthermore, having druggability confidence (>0.99), was explored a potential target 1396 virtually screened FDA‐approved drug candidates. Among top‐10 compounds (scores >70), amphotericin B found candidate affinity (Binding energy <−8 kcal/mol) stable interactions (RMSF <0.7 Å) against druggable pockets, mutations, which encourages future adjunct research COLR‐Kp.

Language: Английский

Citations

6

Identification of Potential Carboxylic Acid-Containing Drug Candidate to Design Novel Competitive NDM Inhibitors: An In-Silico Approach Comprising Combined Virtual Screening and Molecular Dynamics Simulation DOI Creative Commons
Karthick Vasudevan, Soumya Basu,

Arumugam Amala

et al.

Research Square (Research Square), Journal Year: 2021, Volume and Issue: unknown

Published: Aug. 10, 2021

Abstract Metallo-β-lactamases (MBLs) producing bacteria especially the ones with New Delhi metallo-beta-lactamase-1 (NDM-1) and its variants can potentially hydrolyse all major β-lactam antibiotics, ultimately escalating anti-microbial resistance world-wide. There is a dearth of approved inhibitors to combat NDM other MBLs bacteria. Hence we focussed find novel inhibitor(s) in-silico which suppress activity NDM/MBLs. A total 2400 compounds were virtually screened identify promising carboxylic acid-containing compound (CID-53986787) analogous antagonist Captopril. Our lead bind adjacent active site zinc ions (Zn1 Zn2) in highly resistant variants. CID-53986787 possesses ~ 5–8% higher binding affinity than Captopril, exhibiting molecular interactions crucial residues that destabilize hydrolytic NDM. was evaluated ascertain safe pharmacological/toxicity profile. Molecular dynamics simulation studies further elucidated stable interaction target protein (NDM-1).

Language: Английский

Citations

13

Cellular and molecular level host-pathogen interactions in Francisella tularensis: A microbial gene network study DOI
Sravan Kumar Miryala, Sudha Ramaiah

Computational Biology and Chemistry, Journal Year: 2021, Volume and Issue: 96, P. 107601 - 107601

Published: Nov. 16, 2021

Language: Английский

Citations

13

A critical review of datasets and computational suites for improving cancer theranostics and biomarker discovery DOI
Gayathri Ashok, Sudha Ramaiah

Medical Oncology, Journal Year: 2022, Volume and Issue: 39(12)

Published: Sept. 29, 2022

Language: Английский

Citations

10

Bioactive phytocompounds against specific target proteins of Borrelia recurrentis responsible for louse‐borne relapsing fever: Genomics and structural bioinformatics evidence DOI
Soumya Basu, Reetika Debroy, Hithesh Kumar

et al.

Medical and Veterinary Entomology, Journal Year: 2022, Volume and Issue: 37(2), P. 213 - 218

Published: Nov. 15, 2022

Louse-borne relapsing fever (LBRF) with high untreated mortality caused by spirochete Borrelia recurrentis is predominantly endemic to Sub-Saharan Africa and has re-emerged in parts of Eastern Europe, Asia Latin America due population migrations. Despite subtractive evolution lice-borne pathogenic spp. from tick-borne species, there been no comprehensive report on conservation protein targets across tick nor exploration phytocompounds that are toxic against lice. From the 19 available whole genomes including B. recurrentis, burgdorferi, hermsii, parkeri miyamotoi, seven drug (>80% domain identity) viz. 30 S ribosomal subunit proteins (RSP) S3, S7, S8, S14, S19, penicillin-binding protein-2 50 RSP L16 were deciphered through multiple sequence alignments. Twelve (hydroxy-tyrosol, baicalein, cis-2-decanoic acid, morin, oenin, rosemarinic kaempferol, piceatannol, rottlerin, luteolin, fisetin monolaurin) previously explored Lyme disease burgdorferi when targeted LBRF-causing revealed multi-target affinity (2%-20% higher than conventional antibiotics) molecular docking. However, based binding all target proteins, stable coarse-grained dynamics (fluctuations <1 Å) safe pharmacological profile, luteolin was prioritized. The study encourages experimental evaluation potent similar protocols for investigating other emerging vector-borne diseases.

Language: Английский

Citations

10