Canadian Journal of Fisheries and Aquatic Sciences,
Journal Year:
2023,
Volume and Issue:
unknown
Published: June 15, 2023
Spatio-temporal
models
are
widely
applied
to
standardise
research
survey
data
and
increasingly
used
generate
density
maps
indices
from
other
sources.
We
developed
a
spatio-temporal
modelling
framework
that
integrates
(treated
as
“reference
dataset”)
sources
(“non-reference
datasets”)
while
estimating
spatially
varying
catchability
for
the
non-reference
datasets.
demonstrated
it
using
two
case
studies.
The
first
involved
bottom
trawl
observer
spiny
dogfish
(
Squalus
acanthias)
on
Chatham
Rise,
New
Zealand.
second
cod
predators
samplers
of
juvenile
snow
crab
Chionoecetes
opilio)
abundance,
integrated
with
industry-cooperative
surveys
in
eastern
Bering
Sea.
Our
leveraged
strengths
individual
(the
quality
reference
dataset
quantity
data),
downweighting
influence
datasets
via
estimated
catchabilities.
They
allowed
generation
annual
longer
time-period
provision
one
single
index
rather
than
multiple
each
covering
shorter
time-period.
Fisheries Oceanography,
Journal Year:
2020,
Volume and Issue:
30(1), P. 69 - 84
Published: Sept. 3, 2020
Abstract
Detecting
and
analyzing
patterns
of
distribution
shifts
range
expansion/contraction
is
important
to
understand
population
dynamics
changes
in
stock
status.
Here,
we
develop
a
spatio‐temporal
model
for
yellow
croaker
(
Larimichthys
polyactis
),
which
was
fitted
bottom
trawl
survey
biomass
data
collected
the
Yellow
Sea
winter
2001–2017.
The
accounts
both
spatial
structure
can
potentially
include
effects
surface
temperature
an
annual
index,
Pacific
Decadal
Oscillation,
represented
using
recently
developed
spatially
varying
coefficient
model.
We
selected
with
no
covariates
based
on
Akaike's
information
criterion.
center
gravity
found
move
northwest
between
2001
2010,
then
southwest
over
period
2010–2017.
These
results
reflected
predicted
progressive
disappearance
density
hotspots
(i.e.,
highest
areas)
north
southeast
areas
Sea,
resulted
central
area
becoming
only
hotspot
2017.
This
finding
has
implications
fisheries
management
context
China–South
Korea
agreement,
as
it
indicates
measurable
displacement
toward
China.
exclusion
from
not
expected
priori
may
be
due
facts
that
environmental
variations
are
pronounced
representation
models
large
proportion
variability
data.
Fisheries Oceanography,
Journal Year:
2021,
Volume and Issue:
30(4), P. 437 - 454
Published: Feb. 7, 2021
Abstract
Many
fish
species
are
shifting
spatial
distributions
in
response
to
climate
change,
but
projecting
these
shifts
and
measuring
their
impact
at
fine
scales
challenging.
We
present
a
simulation
that
projects
change
fishery
landings
due
distribution
shifts,
by
combining
regional
ocean
biogeochemical
models
(forced
three
earth
system
models,
ESMs:
GFDL‐ESM2M,
HadGEM2‐ES,
IPSL‐CM5A‐MR),
correlative
for
port‐level
landings,
framework
which
provides
realistic
values
abundance
conditions
using
an
historical
“reference
period”.
demonstrate
this
approach
the
northern
subpopulation
of
Pacific
sardine,
iconic
commercial
U.S.
West
Coast.
found
northward
shift
sardine
(based
on
subpopulation's
habitat
suitability),
with
projected
declines
southern
ports
(20%–50%
decline
2080)
increase
(up
50%)
or
no
ports,
was
consistent
across
ESMs.
Total
were
more
uncertain,
HadGEM2
indicating
20%
from
2000
15
levels
2070
(a
rate
170
mt/y),
IPSL
10%
(115
GFDL
15%
year
~2050
followed
sharp
decrease.
The
ESMs
also
differed
timing
fishing
season
frequency
closures.
Our
identified
key
constraints
future
can
be
targeted
tactical
assessment;
included
seasonality
quota
allocation
other
catch
portfolio.
Fish and Fisheries,
Journal Year:
2021,
Volume and Issue:
22(6), P. 1359 - 1376
Published: Aug. 3, 2021
Abstract
Fisheries
scientists
and
managers
must
track
rapid
shifts
in
fish
spatial
distribution
to
mitigate
stakeholder
conflict
optimize
survey
designs,
these
result
part
from
animal
movement.
Information
regarding
movement
can
be
obtained
selection
experiments,
tagging
studies,
flux
through
gates
(e.g.
acoustic
arrays),
fishery
catch‐per‐unit
effort
(CPUE),
resource
surveys
genetic/chemical
markers.
However,
there
are
few
accessible
approaches
combine
data
types
while
accounting
for
spatially
correlated
residual
patterns.
We
therefore
discuss
a
model
involving
diffusion
(random
movement),
taxis
(movement
towards
preferred
habitat)
advection
(passive
drift
following
ocean
currents).
specifically
outline
how
processes
fitted
discretizing
space
time
estimating
non‐linear
habitat
preferences
using
environmental
layers
as
well
process
errors.
Finally,
we
introduce
an
R
package,
ATM,
by
fitting
the
bottom
trawl
survey,
longline
Pacific
cod
(
Gadus
macrocephalus
,
Gadidae)
Bering
Sea
during
winter/summer
seasons
1982
2019.
Combining
predicts
increasing
proportion
of
residing
northern
2013
2019,
estimates
informative
recent
stock
assessment
model.
fit
sensitivity
analyses
dropping
tag,
or
data,
this
analysis
shows
that
necessary
identify
rates,
about
among
biogeographic
strata.
This
“hybrid”
species
help
explain
poleward
movement,
project
distributions
under
future
climate
conditions
evaluate
alternative
tag‐deployment
scenarios
designs.
Ecography,
Journal Year:
2022,
Volume and Issue:
2022(10)
Published: July 20, 2022
Although
species
distribution
models
(SDMs)
are
commonly
used
to
hindcast
fine‐scale
population
metrics,
there
remains
a
paucity
of
information
about
how
well
these
predict
future
responses
climate.
Many
conventional
SDMs
rely
on
spatially‐explicit
but
time‐invariant
conditions
quantify
distributions
and
densities.
We
compared
status
quo
‘static'
with
more
climate‐informed
'dynamic'
assess
whether
the
addition
time‐varying
processes
would
improve
performance
and/or
forecast
skill.
Here,
we
present
two
groundfish
case
studies
from
Bering
Sea
–
high
latitude
system
that
has
recently
undergone
considerable
warming.
relied
statistics
(R
2
,
%
deviance
explained,
UBRE
or
GCV)
evaluate
for
presence–absence,
numerical
abundance
biomass
arrowtooth
flounder
Atheresthes
stomias
walleye
pollock
Gadus
chalcogrammus
.
then
retrospective
skill
testing
near‐term
Retrospective
enables
direct
comparisons
between
forecasts
observations
through
process
fitting
forecasting
nested
submodels
within
given
time
series.
found
inclusion
covariates
improved
hindcasts.
However,
dynamic
either
did
not
decreased
relative
static
SDMs.
This
is
likely
result
rapidly
changing
temperatures
ecosystem,
which
required
environmental
were
outside
range
observed
values.
Until
additional
model
development
allows
fully
predictions,
(or
persistence
models)
may
serve
as
reliable
placeholders,
especially
when
anomalous
anticipated.
Nonetheless,
our
findings
demonstrate
support
use
rather
than
selecting
priori
based
their
ability
species–habitat
associations
in
past.
Canadian Journal of Fisheries and Aquatic Sciences,
Journal Year:
2023,
Volume and Issue:
unknown
Published: June 15, 2023
Spatio-temporal
models
are
widely
applied
to
standardise
research
survey
data
and
increasingly
used
generate
density
maps
indices
from
other
sources.
We
developed
a
spatio-temporal
modelling
framework
that
integrates
(treated
as
“reference
dataset”)
sources
(“non-reference
datasets”)
while
estimating
spatially
varying
catchability
for
the
non-reference
datasets.
demonstrated
it
using
two
case
studies.
The
first
involved
bottom
trawl
observer
spiny
dogfish
(
Squalus
acanthias)
on
Chatham
Rise,
New
Zealand.
second
cod
predators
samplers
of
juvenile
snow
crab
Chionoecetes
opilio)
abundance,
integrated
with
industry-cooperative
surveys
in
eastern
Bering
Sea.
Our
leveraged
strengths
individual
(the
quality
reference
dataset
quantity
data),
downweighting
influence
datasets
via
estimated
catchabilities.
They
allowed
generation
annual
longer
time-period
provision
one
single
index
rather
than
multiple
each
covering
shorter
time-period.