Phenotyping, genome‐wide dissection, and prediction of maize root architecture for temperate adaptability
iMeta,
Journal Year:
2025,
Volume and Issue:
4(2)
Published: March 13, 2025
Root
System
Architecture
(RSA)
plays
an
essential
role
in
influencing
maize
yield
by
enhancing
anchorage
and
nutrient
uptake.
Analyzing
RSA
dynamics
holds
potential
for
ideotype-based
breeding
prediction,
given
the
limited
understanding
of
genetic
basis
maize.
Here,
we
obtained
16
root
morphology-related
traits
(R-traits),
7
weight-related
(W-traits),
108
slice-related
microphenotypic
(S-traits)
from
meristem,
elongation,
mature
zones
cross-sectioning
primary,
crown,
lateral
roots
316
lines.
Significant
differences
were
observed
some
between
tropical/subtropical
temperate
lines,
such
as
primary
total
diameters,
lengths,
area.
Additionally,
anatomy
data
integrated
with
genome-wide
association
study
(GWAS)
to
elucidate
architecture
complex
traits.
GWAS
identified
809
genes
associated
R-traits,
261
linked
W-traits,
2577
key
related
We
confirm
function
a
candidate
gene,
fucosyltransferase5
(FUT5),
regulating
development
heat
tolerance
The
different
FUT5
haplotypes
found
lines
are
features
hold
promising
applications
molecular
breeding.
Furthermore,
performed
machine
learning
prediction
models
using
slice
traits,
achieving
high
accuracy.
Collectively,
our
offers
valuable
tool
dissecting
RSA,
along
resources
predictive
beneficial
design
enhancement.
Language: Английский
Melatonin enhances salt tolerance by promoting CcCAD10-mediated lignin biosynthesis in pigeon pea
Theoretical and Applied Genetics,
Journal Year:
2025,
Volume and Issue:
138(4)
Published: March 22, 2025
Language: Английский
Identification of the maize drought-resistant gene Zinc-finger Inflorescence Meristem 23 through high-resolution temporal transcriptome analysis
International Journal of Biological Macromolecules,
Journal Year:
2025,
Volume and Issue:
unknown, P. 142347 - 142347
Published: March 1, 2025
Language: Английский
Genome-Based Identification of the Dof Gene Family in Three Cymbidium Species and Their Responses to Heat Stress in Cymbidium goeringii
Xin He,
No information about this author
Meng-Meng Zhang,
No information about this author
Ye Huang
No information about this author
et al.
International Journal of Molecular Sciences,
Journal Year:
2024,
Volume and Issue:
25(14), P. 7662 - 7662
Published: July 12, 2024
As
an
important
genus
in
Orchidaceae,
Cymbidium
has
rich
ecological
diversity
and
significant
economic
value.
DNA
binding
with
one
zinc
finger
(Dof)
proteins
are
pivotal
plant-specific
transcription
factors
that
play
crucial
roles
the
growth,
development,
stress
response
of
plants.
Although
Dof
genes
have
been
identified
functionally
analyzed
numerous
plants,
exploration
Orchidaceae
remains
limited.
We
conducted
a
thorough
analysis
gene
family
goeringii,
C.
ensifolium,
sinensis.
In
total,
91
(27
CgDofs,
34
CeDofs,
30
CsDofs)
were
identified,
divided
into
five
groups
(I–V)
based
on
phylogenetic
analysis.
All
motif
1
2
conserved
domains
over
half
contained
introns.
Chromosomal
localization
collinearity
revealed
their
evolutionary
relationships
potential
duplication
events.
Analysis
cis-elements
CsDofs
promoters
showed
light-responsive
most
common,
followed
by
hormone-responsive
elements,
plant
growth-related
abiotic
elements.
three
species
primarily
exhibit
random
coil
structure,
while
homology
modeling
exhibited
similarity.
addition,
RT-qPCR
expression
levels
nine
CgDofs
changed
greatly
under
heat
stress.
CgDof03,
CgDof22,
CgDof27,
CgDof08,
CgDof23
varying
degrees
upregulation.
Most
upregulated
belong
to
group
I,
indicating
I
great
for
high-temperature
resistance.
conclusion,
our
study
systematically
demonstrated
molecular
characteristics
different
species,
preliminarily
patterns
stress,
provided
reference
further
breeding
orchids.
Language: Английский
Genome-Wide Identification of the DOF Gene Family in Kiwifruit (Actinidia chinensis) and Functional Validation of AcDOF22 in Response to Drought Stress
International Journal of Molecular Sciences,
Journal Year:
2024,
Volume and Issue:
25(16), P. 9103 - 9103
Published: Aug. 22, 2024
DNA-binding
one
zinc
finger
(DOF)
transcription
factors
are
crucial
plant-specific
regulators
involved
in
growth,
development,
signal
transduction,
and
abiotic
stress
response
generation.
However,
the
genome-wide
identification
characterization
of
AcDOF
genes
their
regulatory
elements
kiwifruit
(Actinidia
chinensis)
has
not
been
thoroughly
investigated.
In
this
study,
we
screened
genome
database
identified
42
(AcDOF1
to
AcDOF42).
Phylogenetic
analysis
facilitated
categorization
these
into
five
subfamilies
(DOF-a,
DOF-b,
DOF-c,
DOF-d,
DOF-e).
We
further
analyzed
motifs,
conserved
domains,
gene
structures,
collinearity
AcDOFgene
family.
Gene
ontology
(GO)
enrichment
indicated
significant
“flower
development”
term
“response
stress”
category.
Promoter
prediction
revealed
numerous
cis-regulatory
related
responses
light,
hormones,
low-temperature
drought
promoters.
RNA-seq
expression
profiles
demonstrated
tissue-specific
genes.
Quantitative
real-time
PCR
results
showed
that
six
selected
(AcDOF04,
AcDOF09,
AcDOF11,
AcDOF13,
AcDOF21,
AcDOF22)
were
differentially
induced
by
abscisic
acid
(ABA),
methyl
jasmonate
(MeJA),
cold,
salt,
stresses,
with
AcDOF22
specifically
expressed
at
high
levels
drought-tolerant
cultivars.
Further
experiments
transient
overexpression
leaf
disks
reduced
water
loss
chlorophyll
degradation.
Additionally,
was
localized
nucleus
exhibited
transcriptional
activation,
enhancing
resistance
activating
downstream
marker
AcDREB2A.
These
findings
lay
foundation
for
elucidating
molecular
mechanisms
offer
new
insights
drought-resistant
breeding.
Language: Английский
Melatonin Enhances Heat Tolerance via Increasing Antioxidant Enzyme Activities and Osmotic Regulatory Substances by Upregulating zmeno1 Expression in Maize (Zea mays L.)
Liru Cao,
No information about this author
Abbas Muhammad Fahim,
No information about this author
Xiaohan Liang
No information about this author
et al.
Antioxidants,
Journal Year:
2024,
Volume and Issue:
13(9), P. 1144 - 1144
Published: Sept. 22, 2024
Heat
stress
severely
affects
the
yield
and
quality
of
maize.
Melatonin
(N-acetyl-5-methoxy-tryptamin,
MT)
plays
an
important
role
in
various
types
resistance
plants,
including
heat
tolerance.
Enolase
(ENO,
2-phospho-D-glycerate
hydrolyase)
contributes
to
plant
growth,
development,
response.
As
now,
molecular
mechanisms
by
which
MT
ENO1
affect
tolerance
are
unknown.
In
our
research,
we
have
revealed
that
(H)
+
(MH)
treatment
upregulate
ZmENO1
expression
levels
15
20
times,
respectively.
overexpression
mutant
maize
lines
were
created
transgenic
genome
editing.
These
results
illustrate
has
a
significant
impact
on
growth
at
seedling
stage.
However,
ZmENO1-OE
showed
lower
degree
susceptibility
stress,
whereas
exhibited
most
severe
effects.
Under
exogenous
application
improves
The
best
highest
survival
rate,
while
zmeno1
mutants
least
desirable
results.
Following
with
H
MH,
level
greatest
increase
reached
maximum
value,
was
lowest.
decreased
maize’s
relative
water
content
fresh
weight,
although
had
led
MDA,
hydrogen
peroxide,
superoxide
all
plants.
Additionally,
ionic
permeability
osmotic
potential
plants
significantly
increased.
decrease
observed
lines.
Interestingly,
MT.
stress-induced
upregulation
ZmSOD,
ZmPOD,
ZmAPX,
ZmCAT,
ZmP5CS,
ZmProDH
levels,
lowest
following
spraying.
patterns
SOD,
POD,
APX,
CAT
enzyme
activity,
as
well
proline
soluble
protein
content,
aligned
variations
these
genes.
Our
findings
indicate
can
gene.
Upregulating
gene
resulted
elevated
ZmProDH.
This
increased
activity
antioxidant
enzymes
higher
osmoregulatory
substances.
Consequently,
it
mitigated
cell
membrane
damage
caused
ultimately
improved
this
study
provide
genetic
resources
for
design
breeding
lay
solid
foundation
further
exploring
mechanism
regulation
Language: Английский