Effective Preparation of FFPE Tissue Samples for Preserving Appropriate Nucleic Acid Quality for Genomic Analysis in Thyroid Carcinoma
Yoichiro Okubo,
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Naoto Toyama,
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Rika Kasajima
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et al.
Endocrine Pathology,
Journal Year:
2024,
Volume and Issue:
35(4), P. 372 - 384
Published: Nov. 19, 2024
Abstract
Formalin-fixed
paraffin-embedded
(FFPE)
tissue
samples
are
important
for
genomic
analysis
of
thyroid
carcinomas,
particularly
various
molecularly
targeted
therapies.
Therefore,
this
study
developed
and
validated
a
technique
preparing
FFPE
that
preserves
nucleic
acid
quality,
which
is
fundamental
precise
analysis,
more
effectively
than
conventional
methods.
We
analyzed
surgically
resected
gland
tumors,
lymph
node
metastases,
separately
fixed
tumor
to
optimize
formalin
fixation
assess
the
influence
specimen
type
preparation
methods
on
quality.
assessed
several
quality
indicators,
including
DNA
integrity
number,
cycle
threshold
ratio,
RNA
DV200.
Separately
consistently
exhibited
higher
conventionally
processed
samples.
Additionally,
metastases
often
exhibit
matching
or
exceeding
highlighting
their
potential
reliability
analysis.
These
findings
suggest
utility
types
comprehensive
genetic
profiling
carcinomas.
In
conclusion,
demonstrated
an
effective
method
preserving
analyses.
Biopsy
punches
enable
collection
at
facilities,
those
without
ability
handle
frozen
specimens.
This
contributes
development
obtaining
high-quality
pathological
can
be
widely
used
in
general
medical
practice.
Moreover,
equal
superior
as
acceptable
sources
Language: Английский
Identification of Oncogenic Alterations in 124 Cases of Pediatric Papillary Thyroid Carcinoma: BEND7::ALK, DLG5::RET, and CCDC30::ROS1 Fusions Induce MAPK Pathway Activation
Endocrine Pathology,
Journal Year:
2025,
Volume and Issue:
36(1)
Published: Feb. 21, 2025
Language: Английский
Effect of storage temperature on nucleic acid quality in formalin-fixed paraffin-embedded tissue samples
Yoichiro Okubo,
No information about this author
Naoto Toyama,
No information about this author
Rika Kasajima
No information about this author
et al.
Annals of Diagnostic Pathology,
Journal Year:
2025,
Volume and Issue:
unknown, P. 152496 - 152496
Published: May 1, 2025
Language: Английский
Primary omental smooth muscle tumor in an adult male: a diagnostic dilemma for leiomyoma: a case report
Yukari Ono,
No information about this author
Yoichiro Okubo,
No information about this author
Kota Washimi
No information about this author
et al.
Journal of Medical Case Reports,
Journal Year:
2024,
Volume and Issue:
18(1)
Published: May 5, 2024
Abstract
Background
The
greater
omentum
comprises
peritoneal,
adipose,
vascular,
and
lymphoid
tissues.
Most
omental
malignancies
are
metastatic
tumors,
the
incidence
of
primary
tumors
is
rare.
We
report
on
a
prior
smooth
muscle
tumor
case
in
an
adult
male
patient.
Case
presentation
A
54-year-old
Japanese
patient
with
no
relevant
medical
history
was
diagnosed
abdominal
mass
during
routine
checkup.
Subsequent
contrast-enhanced
computed
tomography
revealed
approximately
3
cm
size
omentum,
laparotomy
performed.
27
×
25
20
mm
raised
lesion
found
omentum.
Microscopically,
spindle
cells
were
observed
arranged
whorls
fascicles.
Individual
had
short
spindle-shaped
nuclei
slightly
increased
chromatin
characterized
by
eosinophilic,
cytoplasm.
mitotic
count
less
than
1
per
50
high-power
fields.
showed
positive
immunoreactivity
for
α
actin,
HHF35,
desmin
immunohistochemical
examination.
Ki-67
labeling
index
using
average
method
1.76%
(261/14806).
No
any
other
tested
markers.
considered
leiomyoma
owing
to
lack
malignant
findings.
However,
has
rarely
been
reported,
it
can
be
difficult
completely
rule
out
potential
soft
Our
decisively
considering
leiomyoma.
Consequently,
did
not
undergo
additional
adjuvant
therapy
followed
up.
satisfied
treatment
neither
recurrence
nor
metastasis
at
13-month
postoperative
follow-up.
Discussion
conclusion
encountered
histological
findings
suggestive
malignancy
extremely
define
as
benign,
requiring
careful
diagnosis.
Further
reports
long-term
follow-up
series
required
determine
whether
true
benign
(leiomyoma)
exists.
In
addition,
proper
interpretation
should
established.
This
study
foundation
future
research.
Language: Английский