Inflammaging Markers in the Extremely Cold Climate: A Case Study of Yakutian Population DOI Open Access
Alena Kalyakulina, Igor Yusipov, Elena Kondakova

et al.

International Journal of Molecular Sciences, Journal Year: 2024, Volume and Issue: 25(24), P. 13741 - 13741

Published: Dec. 23, 2024

Yakutia is one of the coldest permanently inhabited regions in world, characterized by a subarctic climate with average January temperatures near −40 °C and minimum below −60 °C. Recently, we demonstrated accelerated epigenetic aging Yakutian population comparison to their Central Russian counterparts, residing considerably milder climate. In this paper, analyzed these cohorts from inflammaging perspective addressed two hypotheses: mismatch immunological profiles inflammatory Yakuts. We found that levels 17 cytokines displayed statistically significant differences mean values between groups (with minimal p-value = 2.06 × 10−19), 6 them are among 10 SImAge markers. five out six markers (PDGFB, CD40LG, VEGFA, PDGFA, CXCL10) had higher cohort, therefore, due positive chronological age correlation, might indicate trend toward aging. At same time, biological acceleration difference according clock was not detected because they similar CXCL9, CCL22, IL6, top contributing biomarkers SImAge. introduced an explainable deep neural network separate individual groups, resulting over 95% accuracy. The obtained results allow for hypothesizing specificity cytokine chemokine people living extremely cold climates, possibly reflecting effects long-term human (dis)adaptation conditions related risk developing number pathologies.

Language: Английский

Epigenetic ageing clocks: statistical methods and emerging computational challenges DOI
Andrew E. Teschendorff, Steve Horvath

Nature Reviews Genetics, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 13, 2025

Language: Английский

Citations

3

Organ-specific biological clocks: Ageotyping for personalized anti-aging medicine DOI Creative Commons
Francesco Prattichizzo, Chiara Frigé, Valeria Pellegrini

et al.

Ageing Research Reviews, Journal Year: 2024, Volume and Issue: 96, P. 102253 - 102253

Published: March 4, 2024

Aging is a complex multidimensional, progressive remodeling process affecting multiple organ systems. While many studies have focused on studying aging across organs, assessment of the contribution individual organs to overall processes cutting-edge issue. An organ's biological age might influence other revealing multiorgan network. Recent data demonstrated similar yet asynchronous inter-organs and inter-individuals progression aging, thereby providing foundation track sources declining health in old age. The integration omics with common clinical parameters through artificial intelligence has allowed building organ-specific clocks, which can predict development specific age-related diseases at high resolution. peculiar aging-trajectory, referred as ageotype, provide novel tool for personalized anti-aging, preventive medicine. Here, we review relative clocks omics-based data, suggesting different rates. Additional research longitudinal including young subjects analyzing sex-related differences, should be encouraged apply ageotyping analysis purposes practice.

Language: Английский

Citations

12

Clinical Applications of Artificial Intelligence (AI) in Human Cancer: Is It Time to Update the Diagnostic and Predictive Models in Managing Hepatocellular Carcinoma (HCC)? DOI Creative Commons
Mario Romeo, Marcello Dallio, Carmine Napolitano

et al.

Diagnostics, Journal Year: 2025, Volume and Issue: 15(3), P. 252 - 252

Published: Jan. 22, 2025

In recent years, novel findings have progressively and promisingly supported the potential role of Artificial intelligence (AI) in transforming management various neoplasms, including hepatocellular carcinoma (HCC). HCC represents most common primary liver cancer. Alarmingly, incidence is dramatically increasing worldwide due to simultaneous “pandemic” spreading metabolic dysfunction-associated steatotic disease (MASLD). MASLD currently constitutes leading cause chronic hepatic damage (steatosis steatohepatitis), fibrosis, cirrhosis, configuring a scenario where an onset has been reported even early stage. On other hand, serious plague, significantly burdening outcomes hepatitis B (HBV) C (HCV) virus-infected patients. Despite progress this cancer, overall prognosis for advanced-stage patients continues be poor, suggesting absolute need develop personalized healthcare strategies further. “cold war”, machine learning techniques neural networks are emerging as weapons, able identify patterns biomarkers that would normally escaped human observation. Using advanced algorithms, AI can analyze large volumes clinical data medical images (including routinely obtained ultrasound data) with elevated accuracy, facilitating diagnosis, improving performance predictive models, supporting multidisciplinary (oncologist, gastroenterologist, surgeon, radiologist) team opting best “tailored” individual treatment. Additionally, contribute enhancing effectiveness metabolomics–radiomics-based promoting identification specific HCC-pathogenetic molecules new targets realizing therapeutic regimens. era precision medicine, integrating into routine practice appears promising frontier, opening avenues cancer research

Language: Английский

Citations

1

Current methods in explainable artificial intelligence and future prospects for integrative physiology DOI Creative Commons
Bettina Finzel

Pflügers Archiv - European Journal of Physiology, Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 25, 2025

Abstract Explainable artificial intelligence (XAI) is gaining importance in physiological research, where now used as an analytical and predictive tool for many medical research questions. The primary goal of XAI to make AI models understandable human decision-makers. This can be achieved particular through providing inherently interpretable methods or by making opaque their outputs transparent using post hoc explanations. review introduces core topics provides a selective overview current physiology. It further illustrates solved discusses open challenges existing practical examples from the field. article gives outlook on two possible future prospects: (1) provide trustworthy integrative (2) integrating expertise about explanation into method development useful beneficial human-AI partnerships.

Language: Английский

Citations

1

Map of epigenetic age acceleration: a worldwide analysis DOI
Igor Yusipov, Alena Kalyakulina,

Arseniy Trukhanov

et al.

Ageing Research Reviews, Journal Year: 2024, Volume and Issue: 100, P. 102418 - 102418

Published: July 14, 2024

Language: Английский

Citations

5

Age-based disease prediction and health monitoring: integrating explainable AI and deep learning techniques DOI

G. Sushmitha,

Sairam Utukuru

Iran Journal of Computer Science, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 9, 2025

Language: Английский

Citations

0

Interpretable deep learning of single-cell and epigenetic data reveals novel molecular insights in aging DOI Creative Commons
Zhipeng Li,

Zhaozhen Du,

De-Shuang Huang

et al.

Scientific Reports, Journal Year: 2025, Volume and Issue: 15(1)

Published: Feb. 11, 2025

Deep learning (DL) and explainable artificial intelligence (XAI) have emerged as powerful machine-learning tools to identify complex predictive data patterns in a spatial or temporal domain. Here, we consider the application of DL XAI large omic datasets, order study biological aging at molecular level. We develop an advanced multi-view graph-level representation (MGRL) framework that integrates prior network information, build clocks cell-type resolution, which subsequently interpret using XAI. apply this one largest single-cell transcriptomic datasets encompassing over million immune cells from 981 donors, revealing ribosomal gene subnetwork, whose expression correlates with age independently cell-type. Application same DL-XAI DNA methylation sorted monocytes reveals epigenetically deregulated inflammatory response pathway activity increases age. show module pathways would not been discovered had used more standard methods. In summary, computational deep presented here illustrates how when combined AI tools, can reveal novel insights into process aging.

Language: Английский

Citations

0

Deep learning in nuclear medicine: from imaging to therapy DOI

Meng-Xin Zhang,

Pengfei Liu, Mengdi Zhang

et al.

Annals of Nuclear Medicine, Journal Year: 2025, Volume and Issue: unknown

Published: March 13, 2025

Language: Английский

Citations

0

Explainable machine learning framework for biomarker discovery by combining biological age and frailty prediction DOI Creative Commons
Xiheng Wang, Jie Ji

Scientific Reports, Journal Year: 2025, Volume and Issue: 15(1)

Published: April 22, 2025

Language: Английский

Citations

0

Map of epigenetic age acceleration: a worldwide meta-analysis DOI Creative Commons
Igor Yusipov, Alena Kalyakulina, Claudio Franceschi

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2024, Volume and Issue: unknown

Published: March 17, 2024

Abstract This study is the first systematic meta-analysis of epigenetic age acceleration largest publicly available DNA methylation data for healthy samples (93 datasets, 23K samples), focusing on geographic and ethnic aspects different countries (25 countries) populations (31 ethnicities) around world. The most popular tools assessing were examined in detail, their quality metrics analyzed, ability to extrapolate from tissue types ranges training these models was explored. In cases, are not consistent with each other show signs acceleration, PhenoAge model tending systematically underestimate versions GrimAge overestimate prediction subjects. Although GEO open-access database, represented, datasets use criteria determining controls. Because this, it difficult fully isolate contribution “geography/environment”, “ethnicity” “healthiness” acceleration. However, DunedinPACE metric, which measures aging rate, adequately reflects standard living socioeconomic indicators countries, although can be applied only blood data. When comparing males faster than females considered.

Language: Английский

Citations

3