Disease related changes in ATAC-Seq of more than 450 iPSC-derived motor neuron lines from ALS patients and controls DOI Open Access

Stanislav Tsitkov,

Kelsey Valentine,

Velina Kozareva

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2023, Volume and Issue: unknown

Published: Sept. 13, 2023

Abstract Amyotrophic Lateral Sclerosis (ALS), like many other neurodegenerative diseases, is highly heritable, but with only a small fraction of cases explained by monogenic disease alleles. To better understand sporadic ALS, we report epigenomic profiles, as measured ATAC-seq, motor neuron cultures derived from diverse group 380 ALS patients and 80 healthy controls. We find that chromatin accessibility heavily influenced sex, the iPSC cell type origin, ancestry, inherent variance arising sequencing. Once these covariates are corrected for, able to identify robust ALS-specific signals in data. Additionally, ATAC-seq data predict progression rates similar accuracy methods based on biomarkers clinical status. These results suggest iPSC-derived neurons recapitulate important disease-relevant changes.

Language: Английский

Unveiling the role of histone deacetylases in neurological diseases: focus on epilepsy DOI Creative Commons

Danfeng Cao,

Xinyu Zhou, Qian Guo

et al.

Biomarker Research, Journal Year: 2024, Volume and Issue: 12(1)

Published: Nov. 19, 2024

Abstract Epilepsy remains a prevalent chronic neurological disease that is featured by aberrant, recurrent and hypersynchronous discharge of neurons poses great challenge to healthcare systems. Although several therapeutic interventions are successfully utilized for treating epilepsy, they can merely provide symptom relief but cannot exert disease-modifying effect. Therefore, it urgent need explore other potential mechanism develop novel approach delay the epileptic progression. Since approximately 30 years ago, histone deacetylases (HDACs), versatile epigenetic regulators responsible gene transcription via binding histones or non-histone substrates, have grabbed considerable attention in drug discovery. There also substantial evidences supporting aberrant expressions and/activities HDAC isoforms reported epilepsy inhibitors (HDACi) been purposes this condition. However, specific mechanisms underlying role HDACs progression not fully understood. Herein, we reviewed basic information HDACs, summarized recent findings associated with roles diverse subunits discussed regulatory which affected development epilepsy. Additionally, provided brief discussion on as promising targets treatment, serving valuable reference study clinical translation field.

Language: Английский

Citations

16

Advancing personalized medicine in neurodegenerative diseases: The role of epigenetics and pharmacoepigenomics in pharmacotherapy DOI Creative Commons
Christian Griñán‐Ferré, Aina Bellver‐Sanchís, Ana Guerrero

et al.

Pharmacological Research, Journal Year: 2024, Volume and Issue: 205, P. 107247 - 107247

Published: June 2, 2024

About 80% of brain disorders have a genetic basis. The pathogenesis most neurodegenerative diseases is associated with myriad defects, epigenetic alterations (DNA methylation, histone/chromatin remodeling, miRNA dysregulation), and environmental factors. emergence new sequencing technologies tools to study the epigenome has led identifying predictive biomarkers for earlier diagnosis, opening up possibility prophylactical interventions. As result, advances in pharmacogenetics pharmacoepigenomics now allow personalized treatments based on profile each patient specific mechanisms involved. This Review highlights complexity variability responses pharmacotherapy, emphasizing influence polymorphisms pharmacokinetics pharmacodynamics drugs used treat those conditions. We specifically discuss potential modulatory effect several an increased risk developing different diseases. explore genomic analyzing individual-specific drug metabolism predict response clinical outcomes. also provide insights into mechanism action under investigation their impact disease-modifying pathways. Finally, underscores great this field enhance effectiveness safety through medicine.

Language: Английский

Citations

14

Epigenetic clocks in neurodegenerative diseases: a systematic review DOI

Tianmi Yang,

Yi Xiao, Yangfan Cheng

et al.

Journal of Neurology Neurosurgery & Psychiatry, Journal Year: 2023, Volume and Issue: 94(12), P. 1064 - 1070

Published: March 24, 2023

Background Biological ageing is one of the principal risk factors for neurodegenerative diseases. It becoming increasingly clear that acceleration DNA methylation age, as measured by epigenetic clock, closely associated with many age-related Methods We searched PubMed and Web Science databases to identify eligible studies reporting clocks in several diseases, including Alzheimer’s disease (AD), Parkinson’s (PD), amyotrophic lateral sclerosis (ALS) Huntington’s (HD). Results Twenty-three (12 AD, 4 PD, 5 ALS, 2 HD) were included. systematically summarised clinical utility 11 (based on blood brain tissues) assessing factors, age onset, diagnosis, progression, prognosis pathology ALS HD. also critically described our current understandings these evidences, further discussed key challenges, potential mechanisms future perspectives Conclusions Epigenetic hold great Further research encouraged evaluate promote application. PROSPERO registration number CRD42022365233.

Language: Английский

Citations

22

Epigenetic Regulation of Ferroptosis in Central Nervous System Diseases DOI
Ting Lan, Ting Sun, Chao Wei

et al.

Molecular Neurobiology, Journal Year: 2023, Volume and Issue: 60(7), P. 3584 - 3599

Published: Feb. 27, 2023

Language: Английский

Citations

18

Decoding Neurodegeneration: A Review of Molecular Mechanisms and Therapeutic Advances in Alzheimer’s, Parkinson’s, and ALS DOI Open Access
Corneliu Toader,

Călin Petru Tătaru,

Octavian Munteanu

et al.

International Journal of Molecular Sciences, Journal Year: 2024, Volume and Issue: 25(23), P. 12613 - 12613

Published: Nov. 24, 2024

Neurodegenerative diseases, such as Alzheimer's, Parkinson's, ALS, and Huntington's, remain formidable challenges in medicine, with their relentless progression limited therapeutic options. These diseases arise from a web of molecular disturbances-misfolded proteins, chronic neuroinflammation, mitochondrial dysfunction, genetic mutations-that slowly dismantle neuronal integrity. Yet, recent scientific breakthroughs are opening new paths to intervene these once-intractable conditions. This review synthesizes the latest insights into underlying dynamics neurodegeneration, revealing how intertwined pathways drive course diseases. With an eye on most promising advances, we explore innovative therapies emerging cutting-edge research: nanotechnology-based drug delivery systems capable navigating blood-brain barrier, gene-editing tools like CRISPR designed correct harmful variants, stem cell strategies that not only replace lost neurons but foster neuroprotective environments. Pharmacogenomics is reshaping treatment personalization, enabling tailored align individual profiles, while diagnostics biomarkers ushering era early, precise disease detection. Furthermore, novel perspectives gut-brain axis sparking interest mounting evidence suggests microbiome modulation may play role reducing neuroinflammatory responses linked neurodegenerative progression. Taken together, advances signal shift toward comprehensive, personalized approach could transform care. By integrating techniques, this offers forward-looking perspective future where treatments aim just manage symptoms fundamentally alter progression, presenting renewed hope for improved patient outcomes.

Language: Английский

Citations

9

A bibliometric and visual analysis of epigenetic research publications for Alzheimer’s disease (2013–2023) DOI Creative Commons

Zhao YaPing,

WenJing Ai,

JingFeng Zheng

et al.

Frontiers in Aging Neuroscience, Journal Year: 2024, Volume and Issue: 16

Published: Jan. 16, 2024

Background Currently, the prevalence of Alzheimer’s disease (AD) is progressively rising, particularly in developed nations. There an escalating focus on onset and progression AD. A mounting body research indicates that epigenetics significantly contributes to AD holds substantial promise as a novel therapeutic target for its treatment. Objective The objective this article present areas interest, comprehend contextual framework subject research, investigate prospective direction future development. Methods ln Web Science Core Collection (WOSCC), we searched documents by specific terms their corresponding free words. VOSviewer, CiteSpace Scimago Graphica were used perform statistical analysis measurement metrics such number published papers, national cooperative networks, publishing countries, institutions, authors, co-cited journals, keywords, visualize networks related content elements. Results We selected 1,530 articles from WOSCC January 2013 June 2023 about Based visual analysis, could get China United States countries with most field. Bennett DA was contributed prestigious scientist. top 3 cited journals Journal Disease, Neurobiology Aging Molecular Neurobiology. According keywords frequency citations, ncRNAs, transcription factor, genome, histone modification, blood DNA methylation, acetylation, biomarkers hot directions today. Conclusion bibliometric epigenetic promising direction, had potential be targets.

Language: Английский

Citations

5

Exploring the epigenome to identify biological links between the urban environment and neurodegenerative disease: an evidence review DOI Creative Commons
S. W. Glover, Claire Hill, Bernadette McGuinness

et al.

Cities & Health, Journal Year: 2024, Volume and Issue: 8(6), P. 1153 - 1175

Published: April 15, 2024

Global urbanisation has occurred in tandem with population ageing, having implications on human cognitive health. Urban environmental factors such as air pollution are known risk of impairment and neurodegenerative disease. However, due to the sparse evidence base, biological pathways by which urban operate not well understood. The aim this review is explain how exploring epigenome (i.e. chemical modifications genome do change underlying gene sequence) can further our understanding these pathways. influenced for Utilising complex epigenetic analytical techniques including clocks, Mendelian randomization multi-omic approaches, it possible identify consequences biology. Through better modifications, be inherited or dynamically response exposures, impact outcomes, we work encourage development public health policies, planning design policies reduce burden disease healthier ageing older adult population.

Language: Английский

Citations

4

Disease related changes in ATAC-seq of iPSC-derived motor neuron lines from ALS patients and controls DOI Creative Commons

Stanislav Tsitkov,

Kelsey Valentine,

Velina Kozareva

et al.

Nature Communications, Journal Year: 2024, Volume and Issue: 15(1)

Published: May 2, 2024

Amyotrophic Lateral Sclerosis (ALS), like many other neurodegenerative diseases, is highly heritable, but with only a small fraction of cases explained by monogenic disease alleles. To better understand sporadic ALS, we report epigenomic profiles, as measured ATAC-seq, motor neuron cultures derived from diverse group 380 ALS patients and 80 healthy controls. We find that chromatin accessibility heavily influenced sex, the iPSC cell type origin, ancestry, inherent variance arising sequencing. Once these covariates are corrected for, able to identify ALS-specific signals in data. Additionally, ATAC-seq data predict progression rates similar accuracy methods based on biomarkers clinical status. These results suggest iPSC-derived neurons recapitulate important disease-relevant changes.

Language: Английский

Citations

4

The Promise of Epigenetic Editing for Treating Brain Disorders DOI
Luis Alfonso González-Molina, Amalia M. Dolga, Marianne G. Rots

et al.

Sub-cellular biochemistry/Subcellular biochemistry, Journal Year: 2025, Volume and Issue: unknown, P. 111 - 190

Published: Jan. 1, 2025

Language: Английский

Citations

0

Values of epigenetic markers in Parkinson's disease as biomarkers and therapeutic targets: A narrative review DOI Creative Commons
Dhruv Parikh, Manan Shah

NeuroMarkers., Journal Year: 2025, Volume and Issue: unknown, P. 100037 - 100037

Published: Feb. 1, 2025

Language: Английский

Citations

0