bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Sept. 14, 2023
Abstract
One
of
the
important
yet
labor
intensive
tasks
in
neuroanatomy
is
identification
select
populations
cells.
Current
high-throughput
techniques
enable
marking
cells
with
histochemical
fluorescent
molecules
as
well
through
genetic
expression
proteins.
Modern
scanning
microscopes
allow
high
resolution
multi-channel
imaging
mechanically
or
optically
sectioned
brain
thousands
marked
per
square
millimeter.
Manual
all
prohibitively
time
consuming.
At
same
time,
simple
segmentation
algorithms
suffer
from
error
rates
and
sensitivity
to
variation
intensity
spatial
distribution.
We
present
a
methodology
that
combines
human
judgement
machine
learning
serves
significantly
reduce
anatomist
while
improving
consistency
annotation.
As
demonstration,
we
analyzed
murine
brains
premotor
neurons
brainstem.
compared
rate
our
method
disagreement
among
anatomists.
This
comparison
shows
can
annotate
by
much
ten-fold
without
increasing
errors.
show
achieves
significant
reduction
achieving
an
accuracy
similar
level
agreement
between
different
The Journal of Physiology,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Jan. 26, 2025
Abstract
The
cerebellum
is
critical
for
coordinating
movements
related
to
eating,
drinking
and
swallowing,
all
of
which
require
proper
control
the
tongue.
Cerebellar
Purkinje
cells
can
encode
tongue
movements,
but
it
unclear
how
their
simple
spikes
complex
induce
changes
in
shape
that
contribute
goal‐directed
movements.
To
study
these
relations,
we
recorded
stimulated
vermis
hemispheres
mice
during
spontaneous
licking
from
a
stationary
or
moving
water
spout.
We
found
rhythmic
with
both
spikes.
Increased
spike
firing
protrusion
induces
ipsiversive
bending
Unexpected
target
location
trigger
alter
subsequent
licks,
adjusting
trajectory.
Furthermore,
observed
increased
behavioural
state
at
start
end
bouts.
Using
machine
learning,
confirmed
alterations
cell
activity
accompany
licking,
different
often
exerting
heterogeneous
encoding
schemes.
Our
data
highlight
directional
movement
paramount
cerebellar
function
modulation
are
complementary
acquisition
execution
sensorimotor
coordination.
These
results
bring
us
closer
understanding
clinical
implications
disorders
swallowing.
image
Key
points
When
drinking,
make
directed
towards
source.
fire
rhythmically
tune
position
source
affects
direction
report
also
adjust
right
direction.
The Journal of Physiology,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Feb. 21, 2025
Abstract
Respiration
shapes
brain
activity
and
synchronizes
sensory
exploratory
motor
actions,
with
some
evidence
suggesting
that
it
also
affects
pupil
size.
However,
for
a
coupling
between
respiration
size
remains
scarce
inconclusive,
hindered
by
small
sample
sizes
limited
controls.
Given
the
importance
of
in
visual
perception
as
reflection
state,
understanding
its
relationship
is
essential.
In
five
experiments
using
pre‐registered
protocol,
we
systematically
investigated
how
respiratory
phase
across
different
conditions.
Experiment
1
(
n
=
50),
examined
nasal
oral
breathing
at
rest
under
dim
lighting
nearby
fixation
points,
then
replicated
these
results
identical
conditions
2
53).
3
112)
extended
this
to
active
tasks,
while
4
57)
controlled
paces
ambient
distant
fixation.
Finally,
5
34),
individuals
isolated
congenital
anosmia
(born
without
olfactory
bulbs)
were
used
lesion‐type
model
during
visual–auditory
tasks
assess
whether
respiratory–pupil
link
depends
on
bulb‐driven
oscillations.
Across
all
–
free
breathing;
distances;
bulbs
consistently
found
smallest
around
inhalation
onset
largest
exhalation.
We
term
effect
pupillary
respiratory‐phase
response,
fourth
known
mechanism
influencing
size,
alongside
light,
near
psychosensory
responses.
image
Key
points
The
influence
dynamics
has
long
been
debated.
study,
changes
cycle
through
series
experiments,
varying
lighting,
distance
region
involvement.
show
exhalation,
dilatation
occurring
most
early
constriction
primarily
latter
part
This
pattern
was
consistent
experimental
conditions,
demonstrating
robust
likely
brainstem
circuits.
PLoS Biology,
Journal Year:
2025,
Volume and Issue:
23(4), P. e3003087 - e3003087
Published: April 7, 2025
Active
sensation
requires
the
brain
to
interpret
external
stimuli
against
an
ongoing
estimate
of
body
position.
While
internal
estimates
position
are
often
ascribed
cerebral
cortex,
we
examined
midbrain
superior
colliculus
(SC),
due
its
close
relationship
with
sensory
periphery
as
well
higher,
motor-related
regions.
Using
high-density
electrophysiology
and
movement
tracking,
discovered
that
on-going
kinematics
whisker
motion
locomotion
speed
accurately
predict
firing
rate
mouse
SC
neurons.
Neural
activity
was
best
predicted
by
movements
occurring
either
in
past,
present,
or
future,
indicating
population
continuously
a
trajectory
self-motion.
A
combined
representation
slow
fast
whisking
features
absolute
angle
at
high
temporal
resolution.
Sensory
reafference
played
least
partial
role
shaping
this
feature
tuning.
Taken
together,
these
data
indicate
contains
joint
locomotor
is
potentially
useful
guiding
complex
orienting
involving
face
limbs.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Sept. 14, 2024
Abstract
Interoception
refers
to
the
sensing
of
internal
state
body
and
encompasses
various
bodily
axes.
Yet
many
interoceptive
signals
display
unique
qualities.
The
heart,
lungs,
stomach
each
have
their
distinct
frequencies,
afferent
pathways,
respective
functions.
At
same
time
these
organs
has
been
demonstrated
interact
with
neural
activity
behaviour.
To
what
extent
then
should
different
be
treated
as
separate
modalities
in
interoception?
We
here
aim
answer
this
question
by
assessing
human
participants
whether
phase
visceral
rhythms
is
coupled
corticospinal
excitability
motor
system,
coupling
happens
an
organ-specific
or
organ-general
manner.
combined
continuous
physiological
recordings
single
pulse
Transcranial
Magnetic
Stimulation
(TMS)
probe
phase-amplitude
between
cardiac,
respiratory,
gastric
rhythm
amplitude
Motor
Evoked
Potentials
(MEP).
All
three
contributed
MEP
similar
effect
sizes
at
group
level.
However,
we
found
no
relation
strengths
organs.
Thus,
displaying
high
one
organ
did
not
necessarily
other
organs,
suggestive
profiles.
There
was
also
link
self-reported
awareness
actual
coupling,
suggesting
are
dimensions
interoception.
Together
results
show
that
mediated
least
partially
independent
mechanisms.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: May 8, 2024
Abstract
Facial
expressions
and
movements,
from
a
subtle
ephemeral
grimace,
to
vigorous
rapid
chewing,
offer
direct
insights
into
the
moment-to-moment
change
of
neural
physiological
processes.
Mice,
with
discernible
facial
responses
evolutionarily
conserved
mammalian
movement
control
circuits,
provide
an
ideal
model
unravel
link
between
underlying
states.
However,
existing
frameworks
lack
spatial
or
temporal
resolution
sensitively
track
all
movements
mouse
face,
due
its
small
conical
form
factor.
We
introduce
Cheese3D,
computer
vision
system
that
captures
high-speed
3D
motion
entire
face
(including
ears,
eyes,
whisker
pad,
jaw,
while
covering
both
sides
face)
using
calibrated
six-camera
array.
The
interpretable
framework
extracts
dynamics
anatomically-meaningful
features
in
absolute
world
units
at
sub-millimeter
precision.
precise
face-wide
data
generated
by
Cheese3D
provides
clear
insights,
as
shown
proof-of-principle
experiments
predicting
time
under
general
anesthesia
changing
patterns,
inferring
tooth
muscle
anatomy
fast
ingestion
motions
across
measuring
minute
differences
evoked
brainstem
stimulation,
relating
activity
spontaneous
including
expressive
only
measurable
(e.g.,
angles
ear
motion).
can
serve
discovery
tool
renders
highly
readout
otherwise
hidden
internal
Journal of Neuroscience,
Journal Year:
2024,
Volume and Issue:
44(31), P. e2211232024 - e2211232024
Published: June 25, 2024
The
ventrolateral
medulla
(VLM)
is
a
crucial
region
in
the
brain
for
visceral
and
somatic
control,
serving
as
significant
source
of
synaptic
input
to
spinal
cord.
Experimental
studies
have
shown
that
gene
expression
individual
VLM
neurons
predictive
their
function.
However,
molecular
cellular
organization
has
remained
uncertain.
This
study
aimed
create
comprehensive
dataset
cells
using
single-cell
RNA
sequencing
male
female
mice.
was
enriched
with
targeted
spinally-projecting
adrenergic/noradrenergic
neurons.
Based
on
differentially
expressed
genes,
resulting
114,805
identifies
23
subtypes
neurons,
excluding
those
inferior
olive,
five
astrocytes.
Spinally-projecting
were
found
be
abundant
seven
which
validated
through
situ
hybridization.
These
included
serotonergic
expressing
markers
associated
premotor
ventromedial
medulla.
Further
analysis
identified
nine
six
subtypes,
respectively,
within
each
class
monoaminergic
Marker
genes
identify
neural
network
responsible
breathing
concentrated
two
delineated
from
other
by
excitatory
inhibitory
datasets
are
available
public
download
user-friendly
interface.
Collectively,
this
provides
fine-scale
identification
VLM,
forming
foundation
better
understanding
VLM's
role
vital
functions
motor
control.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Sept. 15, 2024
Sensory
feedback
is
essential
for
motor
performance
and
must
adapt
to
task
demands.
Muscle
spindle
afferents
(MSAs)
are
a
major
primary
source
of
about
movement,
their
responses
readily
modulated
online
by
gain-controller
fusimotor
neurons
other
mechanisms.
They
therefore
powerful
site
implementing
flexible
sensorimotor
control.
We
recorded
from
MSAs
innervating
the
jaw
musculature
during
directed
lick
sequence
task.
Jaw
encoded
complex
jaw–tongue
kinematics.
However,
kinematic
encoding
alone
accounted
less
than
half
MSA
spiking
variability.
representations
kinematics
changed
based
on
progression
(beginning,
middle,
or
end
sequence,
reward
consumption),
suggesting
that
flexibly
tuned
across
Dynamic
control
incoming
signals
may
be
strategy
adaptable
behaviors.
BMC Biology,
Journal Year:
2024,
Volume and Issue:
22(1)
Published: Dec. 24, 2024
The
order
Rodentia
is
the
largest
group
of
mammals.
Diversification
vocal
communication
has
contributed
to
rodent
radiation
and
allowed
them
occupy
diverse
habitats
adopt
different
social
systems.
mechanism
by
which
efficient
sounds,
carry
over
surprisingly
large
distances,
are
generated
incompletely
understood.
Here
we
focused
on
development
function
rhythmic
mouth
movements
laryngeal
sound
production.
We
studied
spontaneously
vocalizing
California
mice
(Peromyscus
californicus)
through
video
recordings.
Mouth
gape
was
estimated
from
images
characteristics
were
measured
in
synchronized
coordinated
their
with
production
but
differently
two
call
types.
In
high-frequency
whistles
("USV
syllables"),
present
postnatal
day
1
reduced
within
first
2
weeks
life.
prominently
during
sustained
vocalizations
("SV
became
more
adjusted
syllable
beginning
end.
Maximum
correlated
intensity
fundamental
frequency
SV
syllables.
effect
strongest
most
predictable
when
closed
temporarily
immobilizing
mandible
an
elevated
position.
This
study
demonstrates
that
orofacial
behavior
not
only
plays
a
critical
role
determining
acoustic
features
also
shows
remarkable
adjustments
early
development.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Nov. 17, 2023
Abstract
The
ventrolateral
medulla
(VLM)
is
a
crucial
region
in
the
brain
for
visceral
and
somatic
control.
It
also
serves
as
significant
source
of
synaptic
input
to
spinal
cord.
Experimental
studies
have
shown
that
gene
expression
individual
VLM
neurons
predictive
their
function.
However,
organizing
principles
remained
uncertain.
This
study
aimed
create
comprehensive
dataset
cells
using
single-cell
RNA
sequencing.
was
enriched
with
targeted
sequencing
spinally-projecting
adrenergic/noradrenergic
neurons.
Based
on
differentially
expressed
genes,
resulting
114,805
identifies
23
subtypes
neurons,
excluding
those
inferior
olive,
5
astrocytes.
Spinally-projecting
were
found
be
abundant
7
which
validated
through
in-situ
hybridization.
These
included
serotonergic
expressing
markers
associated
pre-motor
ventromedial
medulla.
Further
analysis
identified
9
6
subtypes,
respectively,
within
each
class
monoaminergic
Marker
genes
identify
neural
network
responsible
breathing
concentrated
2
delineated
from
other
by
excitatory
inhibitory
datasets
are
available
public
download
user-friendly
interface.
Collectively,
this
provides
fine-scale
molecular
identification
VLM,
forming
foundation
better
understanding
VLM’s
role
vital
functions
motor